NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR879
Library CH
(Link to library)
Clone ID CHR879
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12049-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHR879 (CHR879Q) /CSM/CH/CHR8-D/CHR879Q.Seq.d/
XXXXXXXXXXGTACTCATATTAACCNTTGTATAGTTGGACAATGTGATATATCAAATGGA
CAATGTGTTTATTCTGAAATTATTGATTGTGGTAGTTCTTCAATTGAAAACTCAAGTAAT
CAAGAAAGTTCTAGTGATATTGATATAACAACTGCTTCAACTTTGGGCTCAACAATTGCT
TCAACAATAGGTTCAACTATTGGTTTGACTTCAACAACAACCACAACAACAACATCGCAA
ACAACAGGAACACCAACAACACCACCACAAACAGTTAGTGAAATCCCAATTTCATTAGCA
TCAACAATATCCACAAGCCCAGTATCTGATGAAGGAACAATTGCTTCAACAATAGCAACT
ACCCTTGCTTCAACTATAGCTTCAACATTTGGCTCAACCATATCTTTGACAGCTGTATCT
ACTGATGTTTCCTCGACACTAATTTCAACCATTTCATCAACTTTATCTTCAACATTAGCA
ACAACTTTATCTTCAACTCTATCCTCAACTTTGTCTTCAACATCAGGAGTAACAACATCA
TCACTACCATATGATAAATGCTATAATAAAAAATGTGGAAAAGGAGAAGGTTGTTATAAT
TTTGAAAATAATGCCATTTGTCTCAAAACAAATTGTCTATCATGTTATGATTTAAATTGT
CAATCACAAGGTCTAAAATGTGTATCATTTAAACTGAAAAAAGTCCAAAAGATTTATGCA
ANATTGCTGCGAATATGCTGCAACTGTTCTCATTAAAAATAAANATAAAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---THINXCIVGQCDISNGQCVYSEIIDCGSSSIENSSNQESSSDIDITTASTLGSTIAS
TIGSTIGLTSTTTTTTTSQTTGTPTTPPQTVSEIPISLASTISTSPVSDEGTIASTIATT
LASTIASTFGSTISLTAVSTDVSSTLISTISSTLSSTLATTLSSTLSSTLSSTSGVTTSS
LPYDKCYNKKCGKGEGCYNFENNAICLKTNCLSCYDLNCQSQGLKCVSFKLKKVQKIYAX
LLRICCNCSH*k*x*
Translated Amino Acid sequence (All Frames) 
Frame A:
---ysy*plyswtm*yikwtmclf*ny*lw*ffn*klk*srkf**y*ynncfnfglnncf
nnrfnywfdfnnnhnnniannrntnntttns**npnfisinnihkpsi**rnncfnnsny
pcfnysfniwlnhifdsciy*cfldtnfnhfinfifnisnnfifnsilnfvfnirsnnii
tti**ml**kmwkrrrll*f*k*chlsqnklsiml*fklsitrskmcii*tekspkdlcx
iaanmlqlfslkixik


Frame B:
---THINXCIVGQCDISNGQCVYSEIIDCGSSSIENSSNQESSSDIDITTASTLGSTIAS
TIGSTIGLTSTTTTTTTSQTTGTPTTPPQTVSEIPISLASTISTSPVSDEGTIASTIATT
LASTIASTFGSTISLTAVSTDVSSTLISTISSTLSSTLATTLSSTLSSTLSSTSGVTTSS
LPYDKCYNKKCGKGEGCYNFENNAICLKTNCLSCYDLNCQSQGLKCVSFKLKKVQKIYAX
LLRICCNCSH*k*x*


Frame C:
---liltxv*ldnviyqmdnvfilkllivvvlqlktqvikkvlvili*qllqlwaqqllq
q*vqllv*lqqqpqqqhrkqqehqqhhhkqlvksqfh*hqqypqaqylmkeqllqq*qlp
llql*lqhlaqpyl*qlyllmfprh*fqpfhqlylqh*qqlylqlypqlclqhqe*qhhh
yhminaiiknvekekvviilkimpfvskqivyhvmi*ivnhkv*nvyhln*kkskrfmqx
cceyaatvliknkxk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR879 (CHR879Q) /CSM/CH/CHR8-D/CHR879Q.Seq.d/                        973   0.0
SFJ871 (SFJ871Q) /CSM/SF/SFJ8-C/SFJ871Q.Seq.d/                        952   0.0
SFC320 (SFC320Q) /CSM/SF/SFC3-A/SFC320Q.Seq.d/                        952   0.0
CFI787 (CFI787Q) /CSM/CF/CFI7-D/CFI787Q.Seq.d/                        952   0.0
SFC116 (SFC116Q) /CSM/SF/SFC1-A/SFC116Q.Seq.d/                        938   0.0
AFN713 (AFN713Q) /CSM/AF/AFN7-A/AFN713Q.Seq.d/                        749   0.0
AFC328 (AFC328Q) /CSM/AF/AFC3-B/AFC328Q.Seq.d/                        545   e-154
SFK881 (SFK881Q) /CSM/SF/SFK8-D/SFK881Q.Seq.d/                        392   e-108
VHF237 (VHF237Q) /CSM/VH/VHF2-B/VHF237Q.Seq.d/                         40   0.049
VHC723 (VHC723Q) /CSM/VH/VHC7-A/VHC723Q.Seq.d/                         40   0.049
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BP771473|BP771473.1 Mus musculus mRNA, clone: mie22021, 3' end, expressed inpancreatic islet.    32   0.16   3
AC153558|AC153558.7 Mus musculus 10 BAC RP23-367D2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence.    44   0.19   3
AC153561|AC153561.5 Mus musculus clone RP23-426E11, WORKING DRAFT SEQUENCE, 14 unordered pieces.    44   0.23   3
AC109760|AC109760.4 Rattus norvegicus clone CH230-244G16, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    40   0.34   5
AC097782|AC097782.7 Rattus norvegicus clone CH230-39L14, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    40   0.47   5
AC124685|AC124685.5 Mus musculus chromosome 2 clone RP24-385O22, complete sequence.    36   0.67   5
DT455421|DT455421.1 PP_YEb0036G05 Peach developing fruit mesocarp Stage S4 Prunus persica cDNA clone PP_YEb0036G05, mRNA sequence.    46   1.1    1
CV053095|CV053095.1 EST 12543 Half-Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bge018d09q 5', mRNA sequence.    46   1.1    1
CV052987|CV052987.1 EST 12435 Half-Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bge017n17q 5', mRNA sequence.    46   1.1    1
CV052615|CV052615.1 EST 12063 Half-Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bge016l19q 5', mRNA sequence.    46   1.1    1
dna update 2005.11.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    48   3e-04
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    43   0.012
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    43   0.012
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    34   4.3
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    34   4.3
protein update 2009. 1. 4
PSORT 

 psg: 0.80  gvh: 0.48  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHR879 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHR879Z
3' end seq. 
>CHR879Z.Seq
NNNNNNNNNNGTACTCATATTAACCNTTGTATAGTTGGACAATGTGATATATCAAATGGA
CAATGTGTTTATTCTGAAATTATTGATTGTGGTAGTTCTTCAATTGAAAACTCAAGTAAT
CAAGAAAGTTCTAGTGATATTGATATAACAACTGCTTCAACTTTGGGCTCAACAATTGCT
TCAACAATAGGTTCAACTATTGGTTTGACTTCAACAACAACCACAACAACAACATCGCAA
ACAACAGGAACACCAACAACACCACCACAAACAGTTAGTGAAATCCCAATTTCATTAGCA
TCAACAATATCCACAAGCCCAGTATCTGATGAAGGAACAATTGCTTCAACAATAGCAACT
ACCCTTGCTTCAACTATAGCTTCAACATTTGGCTCAACCATATCTTTGACAGCTGTATCT
ACTGATGTTTCCTCGACACTAATTTCAACCATTTCATCAACTTTATCTTCAACATTAGCA
ACAACTTTATCTTCAACTCTATCCTCAACTTTGTCTTCAACATCAGGAGTAACAACATCA
TCACTACCATATGATAAATGCTATAATAAAAAATGTGGAAAAGGAGAAGGTTGTTATAAT
TTTGAAAATAATGCCATTTGTCTCAAAACAAATTGTCTATCATGTTATGATTTAAATTGT
CAATCACAAGGTCTAAAATGTGTATCATTTAAACTGAAAAAAGTCCAAAAGATTTATGCA
ANATTGCTGCGAATATGCTGCAACTGTTCTCATTAAAAATAAANATAAAA
Length of 3' end seq. 770
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -