>CHR871 (CHR871Q) /CSM/CH/CHR8-C/CHR871Q.Seq.d/
XXXXXXXXXXGGTAAATGTGTAGCTCAAGATTCTCATTGTGATGATAGTAATCCATGTAC
TGATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAAGTTGGTCAATGCAC
TCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTACAGTTGTACCTT
GGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGG
TTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGTA
TTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTCGATAGAAGATGTGC
TCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAAA
TGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTGC
TTTAGTTTCAACTGCTGTTATTGCAAGTGTTGCTGTAGTTGGT

---KCVAQDSHCDDSNPCTDNACVASANSTANSQVGQCTQTPTAKCDLGDKCMVYSCTLE
GGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDRRCAP
DNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVAVVG

Frame A:
---vnv*lkilivmivihvlimlvslqlivppiaklvnalklqllnviwvinvwftvvpw
kvvvmqlnvfvqtlvlvklvivnlvsvvn*riefvlpigivlklnvmqnmvafnsiedvl
liivnvkkvsv*tillsvkmmenvflkimiqnhlfvkkll*fqllllqvll*l


Frame B:
---*mcssrfsl****smy**clcrfs**yrq*pswsmhsnsnc*m*fg**myglqlylg
rwl*cnstclsklwcl*nwll*twfrl*ikg*slffrlvly*ssm*ckiwlhsir*kmcs
****msrrclckqycyr*k*wkmyf*rl*skticlskscfsfnccyckcccsw


Frame C:
---KCVAQDSHCDDSNPCTDNACVASANSTANSQVGQCTQTPTAKCDLGDKCMVYSCTLE
GGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDRRCAP
DNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVAVVG

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR871 (CHR871Q) /CSM/CH/CHR8-C/CHR871Q.Seq.d/                       1017   0.0
CHQ874 (CHQ874Q) /CSM/CH/CHQ8-D/CHQ874Q.Seq.d/                       1001   0.0
SSD152 (SSD152Q) /CSM/SS/SSD1-C/SSD152Q.Seq.d/                       1001   0.0
SHL665 (SHL665Q) /CSM/SH/SHL6-C/SHL665Q.Seq.d/                       1001   0.0
SHL654 (SHL654Q) /CSM/SH/SHL6-C/SHL654Q.Seq.d/                       1001   0.0
SHL544 (SHL544Q) /CSM/SH/SHL5-B/SHL544Q.Seq.d/                       1001   0.0
SHK812 (SHK812Q) /CSM/SH/SHK8-A/SHK812Q.Seq.d/                       1001   0.0
SHK734 (SHK734Q) /CSM/SH/SHK7-B/SHK734Q.Seq.d/                       1001   0.0
SHK126 (SHK126Q) /CSM/SH/SHK1-B/SHK126Q.Seq.d/                       1001   0.0
SHJ710 (SHJ710Q) /CSM/SH/SHJ7-A/SHJ710Q.Seq.d/                       1001   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    66   8e-07  1
CC946427|CC946427.1 BOIFV20TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFV20, genomic survey sequence.    50   0.046  1
BH960705|BH960705.1 odd88f07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    50   0.046  1
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    38   0.55   3
CR752643|CR752643.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-186G11.    44   2.9    1
AC019256|AC019256.4 Homo sapiens chromosome 4 clone RP11-426C17 map 4, WORKING DRAFT SEQUENCE, 24 unordered pieces.    44   2.9    1
AG176953|AG176953.1 Pan troglodytes DNA, clone: RP43-048H06.TJ.    44   2.9    1
BX640465|BX640465.7 Zebrafish DNA sequence from clone CH211-198B21 in linkage group 9.    44   2.9    1
AL731564|AL731564.5 Zebrafish DNA sequence from clone XX-143E18 in linkage group 9.    44   2.9    1
AC068989|AC068989.36 Homo sapiens 4 BAC RP11-662D13 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44   2.9    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                348   6e-95
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   155   4e-37
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   150   2e-35
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   140   2e-32
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                132   4e-30
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                113   2e-24
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 95   9e-19
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    74   3e-12
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    67   3e-10
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...    67   3e-10

 psg: 0.75  gvh: 0.50  alm: 0.31  top: 0.60  tms: 0.07  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CHR871 is cyt

>CHR871Z.Seq
NNNNNNNNNNGGTAAATGTGTAGCTCAAGATTCTCATTGTGATGATAGTAATCCATGTAC
TGATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAAGTTGGTCAATGCAC
TCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTACAGTTGTACCTT
GGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGG
TTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGTA
TTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTCGATAGAAGATGTGC
TCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAAA
TGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTGC
TTTAGTTTCAACTGCTGTTATTGCAAGTGTTGCTGTAGTTGGT