CHR864
Library CH
(Link to library)
Clone ID CHR864
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15753-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHR864 (CHR864Q) /CSM/CH/CHR8-C/CHR864Q.Seq.d/
AAAAAACAATAATATTAATCCTTTTATTTTTTAATTTTTTAAAATTATATAGAGTCCATC
ATATTTATTTTCTCAATAATTAAATAAAAAATTGTCAAATTCTAAAAATTTTTAGAGATA
TACATCCAACACCACTACCATCCAAAAACACATAAATATATACACAAATAAATAGCATAA
ATAAATTTAAACCCACATATTTAAATAATGATTAGTATGGGAATGACAAGTAAAGGCCAA
AATGTAGATGGGGCACCAGCTGGTAACAGCTCCTCAGAATGGATTATATCGTCATCTTCT
TCACCTTTTCAAGCAAATAAAAGATATTCATTAGATCCACCATTTGGTTCAGATTATTCA
CCACCAGCATCACCTCAAAATGAATTGGATCCATTATCATCATATTTTTTAAATTTACAA
TCAGAGGATAACGATGTTCGTAAAACTGCAATCGAGTATATAATAAACACTTTATCAAAT
CCAGATAATGAGAAATTGATAAAAAATCATTTACCTATGATTGTGGTTTTATCTACAGAA
TCACCTTTTGATGATATTAGTGAAGCCTTCACAAATTTTTTAAAACCAATACAGGAAAAA
TATCATATACCCAAACAAAGAACAACAGTATTTACATCAGAATCACAATTACCACCATTG
AATACAGATGATGAATTAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
kkq*y*sfyflif*nyiesiififsiik*kivkf*kfleiyiqhhyhpkthkyihk*ia*
inlnphi*IMISMGMTSKGQNVDGAPAGNSSSEWIISSSSSPFQANKRYSLDPPFGSDYS
PPASPQNELDPLSSYFLNLQSEDNDVRKTAIEYIINTLSNPDNEKLIKNHLPMIVVLSTE
SPFDDISEAFTNFLKPIQEKYHIPKQRTTVFTSESQLPPLNTDDE---


Translated Amino Acid sequence (All Frames)
Frame A:
kkq*y*sfyflif*nyiesiififsiik*kivkf*kfleiyiqhhyhpkthkyihk*ia*
inlnphi*IMISMGMTSKGQNVDGAPAGNSSSEWIISSSSSPFQANKRYSLDPPFGSDYS
PPASPQNELDPLSSYFLNLQSEDNDVRKTAIEYIINTLSNPDNEKLIKNHLPMIVVLSTE
SPFDDISEAFTNFLKPIQEKYHIPKQRTTVFTSESQLPPLNTDDE---


Frame B:
knnninpfif*ffkii*spsylfsq*lnkklsnsknf*rytsntttiqkhiniytnk*hk
*i*thifk**lvwe*qvkakm*mghqlvtapqnglyrhllhlfkqikdih*ihhlvqiih
hqhhlkmnwihyhhif*iynqritmfvklqssi**tlyqiqimrn**kiiyl*lwfylqn
hllmilvkpsqif*nqyrkniiypnkeqqylhqnhnyhh*iqmmn---


Frame C:
ktiilillffnflklyrvhhiyflnn*ikncqilkifrdihptplpsknt*iytqinsin
kfkptylnnd*ygndk*rpkcrwgtsw*qllrmdyivifftfssk*kifirstiwfrlft
tsitsk*igsiiiiffkftirg*rcs*ncnrvynkhfiksr**eidkksftydcgfiyri
tf**y**slhkffktntgkisytqtknnsiyiritittieyr**i---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR864 (CHR864Q) /CSM/CH/CHR8-C/CHR864Q.Seq.d/ 1265 0.0
AHF211 (AHF211Q) /CSM/AH/AHF2-A/AHF211Q.Seq.d/ 1112 0.0
SSC575 (SSC575Q) /CSM/SS/SSC5-D/SSC575Q.Seq.d/ 1059 0.0
VFJ227 (VFJ227Q) /CSM/VF/VFJ2-B/VFJ227Q.Seq.d/ 916 0.0
VHL468 (VHL468Q) /CSM/VH/VHL4-C/VHL468Q.Seq.d/ 837 0.0
VHI353 (VHI353Q) /CSM/VH/VHI3-C/VHI353Q.Seq.d/ 632 e-180
VHH463 (VHH463Q) /CSM/VH/VHH4-C/VHH463Q.Seq.d/ 543 e-153
AHG850 (AHG850Q) /CSM/AH/AHG8-C/AHG850Q.Seq.d/ 44 0.003
VSG137 (VSG137Q) /CSM/VS/VSG1-B/VSG137Q.Seq.d/ 42 0.011
AHB249 (AHB249Q) /CSM/AH/AHB2-C/AHB249Q.Seq.d/ 42 0.011

own update 2002.11.28
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AX251545|AX251545.1 Sequence 513 from Patent WO0168912. 38 1e-06 8
BD453066|BD453066.1 Diagnosis of Diseases Associated with tumor suppressor genes and oncogenes. 38 1e-06 8
AC018793|AC018793.12 Homo sapiens chromosome 11, clone RP11-437G21, complete sequence. 54 2e-04 3
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 38 5e-04 11
AC016035|AC016035.10 Homo sapiens chromosome 11 clone RP11-462E16 map 11, 8 unordered pieces. 54 0.002 3
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 34 0.003 11
AC163348|AC163348.4 Mus musculus chromosome 12 clone RP23-230L2, WORKING DRAFT SEQUENCE, 2 unordered pieces. 54 0.004 1
AC073939|AC073939.6 Mus musculus chromosome 12 clone RP23-218B2 strain C57BL/6J, complete sequence. 54 0.004 1
AF391284|AF391284.1 Homo sapiens 11p15.5 clone LOH11A, partial sequence. 54 0.004 1
AP004285|AP004285.2 Homo sapiens genomic DNA, chromosome 8q23, clone:KB1356H11. 38 0.004 7
dna update 2005.11.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54WU6) RecName: Full=Sestrin homolog; 291 9e-78
AK228694_1(AK228694|pid:none) Arabidopsis thaliana mRNA for hypo... 37 0.69
AC005916_9(AC005916|pid:none) Arabidopsis thaliana chromosome 1 ... 37 0.69
AC012375_3(AC012375|pid:none) Genomic sequence for Arabidopsis t... 37 0.69
BX538352_94(BX538352|pid:none) Cryptosporidium parvum chromosome... 34 3.4
CP000102_1087(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 34 4.5
AF083424_19(AF083424|pid:none) Ateline herpesvirus 3 complete ge... 33 5.9
AE017261_683(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 33 7.6
AP009384_2718(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 33 10.0

protein update 2009. 4.13
PSORT

psg: 0.63 gvh: 0.37 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.14 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for CHR864 is nuc

5' end seq. ID CHR864F
5' end seq.
>CHR864F.Seq
AAAAAACAATAATATTAATCCTTTTATTTTTTAATTTTTTAAAATTATATAGAGTCCATC
ATATTTATTTTCTCAATAATTAAATAAAAAATTGTCAAATTCTAAAAATTTTTAGAGATA
TACATCCAACACCACTACCATCCAAAAACACATAAATATATACACAAATAAATAGCATAA
ATAAATTTAAACCCACATATTTAAATAATGATTAGTATGGGAATGACAAGTAAAGGCCAA
AATGTAGATGGGGCACCAGCTGGTAACAGCTCCTCAGAATGGATTATATCGTCATCTTCT
TCACCTTTTCAAGCAAATAAAAGATATTCATTAGATCCACCATTTGGTTCAGATTATTCA
CCACCAGCATCACCTCAAAATGAATTGGATCCATTATCATCATATTTTTTAAATTTACAA
TCAGAGGATAACGATGTTCGTAAAACTGCAATCGAGTATATAATAAACACTTTATCAAAT
CCAGATAATGAGAAATTGATAAAAAATCATTTACCTATGATTGTGGTTTTATCTACAGAA
TCACCTTTTGATGATATTAGTGAAGCCTTCACAAATTTTTTAAAACCAATACAGGAAAAA
TATCATATACCCAAACAAAGAACAACAGTATTTACATCAGAATCACAATTACCACCATTG
AATACAGATGATGAATTANNNNNNNNNN
Length of 5' end seq. 688
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -