>CHR863 (CHR863Q) /CSM/CH/CHR8-C/CHR863Q.Seq.d/
XXXXXXXXXXGCAATCAATCGTGTTATCAATCAAAATATACCACTCTATGAAATTGCACT
TGGTAAACAAATGACAAGTGGTAGTGAAAATGATTATATCACAAATTTACTATCGGTTGG
TCCAAATGTTTGGGTATCACTTAAAGAAACACCATCAATTTTGGTTTATAATGTAAAGAG
TAAAGAATTGGTTACAAAAATCTCTTTAAATGATGATCAATCCAGTGATCAATGGGGTAA
AACTGGTGCTGTAAATATGATGTTGGTTAATAATTTCGTTTGGATAACTGGTGGTTCAAA
ATTGACTCAAATTGATTCACAATCTTATCAACTCTTGGAAGTACATGGAAATCATTATTC
AAAACCAATCACCTCAATGGCATTGGTTGAAAAAAATGTTTGGATCTCTTGTGAAGATGA
ATCACTTTCAGTTTGGGATGGTGATACTGGTTCCTTTATTAGAAAAGTTGGTTCTCCAAT
TGGTTCACCAACTAAGCCAACCGTTTACACTAAACTTTTATATTTCAGTGGTTATGTTTG
GGCTTGTACTCAAGGTTCAATTCATATTTATTGTATTCATTCATTAACTTGTAAAAAGAA
AGTTGAATCAAAAAATCATCCAA

---INRVINQNIPLYEIALGKQMTSGSENDYITNLLSVGPNVWVSLKETPSILVYNVKSK
ELVTKISLNDDQSSDQWGKTGAVNMMLVNNFVWITGGSKLTQIDSQSYQLLEVHGNHYSK
PITSMALVEKNVWISCEDESLSVWDGDTGSFIRKVGSPIGSPTKPTVYTKLLYFSGYVWA
CTQGSIHIYCIHSLTCKKKVESKNHP

Frame A:
---qsivlsikiyhsmklhlvnk*qvvvkmiisqiyyrlvqmfgyhlkkhhqfwfim*rv
knwlqksl*mminpvingvklvl*i*cwliisfg*lvvqn*lklihnlinswkymeiiiq
nqspqwhwlkkmfgslvkmnhfqfgmvilvplleklvlqlvhqlsqpftlnfyisvvmfg
lvlkvqfifivfih*lvkrklnqkiiq


Frame B:
---nqscyqskyttl*nctw*tndkw**k*lyhkftigwskclgit*rntinfgl*cke*
rigyknlfk**siq*smg*nwcckydvg**frldnwwfkidsn*ftilstlgstwkslfk
tnhlngig*kkcldll*r*itfslgw*ywfly*kswfsnwftn*anrlh*tfifqwlclg
lysrfnsyllysfinl*kes*ikkss


Frame C:
---INRVINQNIPLYEIALGKQMTSGSENDYITNLLSVGPNVWVSLKETPSILVYNVKSK
ELVTKISLNDDQSSDQWGKTGAVNMMLVNNFVWITGGSKLTQIDSQSYQLLEVHGNHYSK
PITSMALVEKNVWISCEDESLSVWDGDTGSFIRKVGSPIGSPTKPTVYTKLLYFSGYVWA
CTQGSIHIYCIHSLTCKKKVESKNHP

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHK434 (VHK434Q) /CSM/VH/VHK4-B/VHK434Q.Seq.d/                       1174   0.0
VHA316 (VHA316Q) /CSM/VH/VHA3-A/VHA316Q.Seq.d/                       1174   0.0
SLG288 (SLG288Q) /CSM/SL/SLG2-D/SLG288Q.Seq.d/                       1174   0.0
SHK340 (SHK340Q) /CSM/SH/SHK3-B/SHK340Q.Seq.d/                       1174   0.0
SHD505 (SHD505Q) /CSM/SH/SHD5-A/SHD505Q.Seq.d/                       1174   0.0
SFF718 (SFF718Q) /CSM/SF/SFF7-A/SFF718Q.Seq.d/                       1174   0.0
CHR863 (CHR863Q) /CSM/CH/CHR8-C/CHR863Q.Seq.d/                       1174   0.0
CHR483 (CHR483Q) /CSM/CH/CHR4-D/CHR483Q.Seq.d/                       1174   0.0
AHO203 (AHO203Q) /CSM/AH/AHO2-A/AHO203Q.Seq.d/                       1174   0.0
AHK747 (AHK747Q) /CSM/AH/AHK7-B/AHK747Q.Seq.d/                       1174   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY232268|AY232268.1 Dictyostelium discoideum putative protein Roco6 (roco6) gene, complete cds.   751   0.0    2
AP008207|AP008207.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1.    48   0.22   1
AP003793|AP003793.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487E11.    48   0.22   1
BZ126038|BZ126038.1 CH230-452A17.TV CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-452A17, DNA sequence.    40   0.54   2
AZ135866|AZ135866.1 SP_0153_B2_F10_T7A Strongylocentrotus purpuratus, purple sea urchin , sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=153 Col=20 Row=L, DNA sequence.    46   0.87   1
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    34   1.6    2
AL109815|AL109815.2 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P10.    34   2.2    5
AJ588082|AJ588082.1 Arabidopsis thaliana T-DNA flanking sequence, left border, clone  526D11, genomic survey sequence.    34   3.3    2
AL645545|AL645545.8 Mouse DNA sequence from clone RP23-203J4 on chromosome X.    36   3.4    3
DR123099|DR123099.1 49328312 Drosophila pseudoobscura embryonic cDNA library Drosophila pseudoobscura cDNA clone I11 5', mRNA sequence.    44   3.4    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY232268_1(AY232268|pid:none) Dictyostelium discoideum putative ...   420   e-116
CP000881_102(CP000881|pid:none) Hemiselmis andersenii chromosome...    40   0.052
AJ252065_1(AJ252065|pid:none) Arabidopsis thaliana partial mRNA ...    37   0.34
AE004439_1857(AE004439|pid:none) Pasteurella multocida subsp. mu...    37   0.58
AE014297_2492(AE014297|pid:none) Drosophila melanogaster chromos...    35   1.3
CP000230_864(CP000230|pid:none) Rhodospirillum rubrum ATCC 11170...    35   1.3
CP000139_2156(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,...    35   1.7
AJ010592_156(AJ010592|pid:none) Guillardia theta DNA for complet...    35   1.7
(Q55FJ0) RecName: Full=Probable inactive serine/threonine-protei...    35   1.7
BX005458_2(BX005458|pid:none) Zebrafish DNA sequence from clone ...    35   2.2

 psg: 0.73  gvh: 0.36  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for CHR863 is cyt

>CHR863Z.Seq
NNNNNNNNNNGCAATCAATCGTGTTATCAATCAAAATATACCACTCTATGAAATTGCACT
TGGTAAACAAATGACAAGTGGTAGTGAAAATGATTATATCACAAATTTACTATCGGTTGG
TCCAAATGTTTGGGTATCACTTAAAGAAACACCATCAATTTTGGTTTATAATGTAAAGAG
TAAAGAATTGGTTACAAAAATCTCTTTAAATGATGATCAATCCAGTGATCAATGGGGTAA
AACTGGTGCTGTAAATATGATGTTGGTTAATAATTTCGTTTGGATAACTGGTGGTTCAAA
ATTGACTCAAATTGATTCACAATCTTATCAACTCTTGGAAGTACATGGAAATCATTATTC
AAAACCAATCACCTCAATGGCATTGGTTGAAAAAAATGTTTGGATCTCTTGTGAAGATGA
ATCACTTTCAGTTTGGGATGGTGATACTGGTTCCTTTATTAGAAAAGTTGGTTCTCCAAT
TGGTTCACCAACTAAGCCAACCGTTTACACTAAACTTTTATATTTCAGTGGTTATGTTTG
GGCTTGTACTCAAGGTTCAATTCATATTTATTGTATTCATTCATTAACTTGTAAAAAGAA
AGTTGAATCAAAAAATCATCCAA