>CHR861 (CHR861Q) /CSM/CH/CHR8-C/CHR861Q.Seq.d/
XXXXXXXXXXATGAAACNACCGAATTGGNTAATAAANATATTAAATTCNTTTCAAANANA
GCNTNTGGNGAAATTNAATCNATTTCNACTTGGNCAANANAATTTGTTNAAAATNATCCN
GCCTACNATCATGATTCCNTNGTAAATGATGAAATTCNAGNTGATTATTTTCAACGTTGT
TTANATATTTCAAANGGNACCNTTTATGATAGNTCNATTCAAGGCGATAAANATGATTAT
TATTGTTAAATATTNTATTTTNTCCTATTCCNCNACTANANANANATTTGNGNGNATNTT
CNATTTTNAATTAATTTTAAAAATATAATAATAATAAAACAATAATNATAATTNAAAAAA
AAAAAGGTAAAAAATGGAAAATAAATTAAATCTCAATATAAAAATAATAATCAAATAAAA
AATAAAAAAAATAAAAAAAATAAAACATTTATTT

---ETTELXNKXIKFXSXXAXGEIXSISTWXXXFVXNXPAYXHDSXVNDEIXXDYFQRCL
XISXGTXYDXSIQGDKXDYYC*ixyfxlfxxxxxixxxxxfxinfkniiiikq*x*xkkk
kvkngk*iksqyknnnqiknkknkknktfi

Frame A:
---*nxrig**xy*ixfkxsxwxnxixfxlxxxicxkxsxlxs*fxxk**nsx*lfstlf
xyfkxxxl**xxsrr*x*llllnixfxpipxlxxxlxxxsixn*f*kynnnktixiixkk
kgkkwkin*isi*k**snkk*kk*kk*niy


Frame B:
---ETTELXNKXIKFXSXXAXGEIXSISTWXXXFVXNXPAYXHDSXVNDEIXXDYFQRCL
XISXGTXYDXSIQGDKXDYYC*ixyfxlfxxxxxixxxxxfxinfkniiiikq*x*xkkk
kvkngk*iksqyknnnqiknkknkknktfi


Frame C:
---kxpnwxixilnsfqxxxxxkxnxfxlgqxnlxkxixptimipx*mmkfxxiifnvvx
ifqxxpfmixxfkaixmiiivkyxixsysxtxxxfxxxfxfxlilki****nnnxnxkkk
r*kmenklnlnikiiik*kikkikkikhlf

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR861 (CHR861Q) /CSM/CH/CHR8-C/CHR861Q.Seq.d/                        329   2e-89
CHG747 (CHG747Q) /CSM/CH/CHG7-B/CHG747Q.Seq.d/                        313   1e-84
FC-AA06 (FC-AA06Q) /CSM/FC/FC-AA/FC-AA06Q.Seq.d/                      297   7e-80
SSM740 (SSM740Q) /CSM/SS/SSM7-B/SSM740Q.Seq.d/                         36   0.44
SSI643 (SSI643Q) /CSM/SS/SSI6-B/SSI643Q.Seq.d/                         36   0.44
SSI269 (SSI269Q) /CSM/SS/SSI2-C/SSI269Q.Seq.d/                         36   0.44
SSI268 (SSI268Q) /CSM/SS/SSI2-C/SSI268Q.Seq.d/                         36   0.44
SSH539 (SSH539Q) /CSM/SS/SSH5-B/SSH539Q.Seq.d/                         36   0.44
SSH123 (SSH123Q) /CSM/SS/SSH1-A/SSH123Q.Seq.d/                         36   0.44
SSD312 (SSD312Q) /CSM/SS/SSD3-A/SSD312Q.Seq.d/                         36   0.44

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CC209582|CC209582.1 CH261-112H2_Sp6.1 CH261 Gallus gallus genomic clone CH261-112H2,genomic survey sequence.    46   0.62   1
BV617878|BV617878.1 S217P6307RC3.T0 Noemie Pan troglodytes troglodytes STS genomic, sequence tagged site.    42   9.7    1
CW944481|CW944481.1 TcB26.3_E03_T7 Tribolium BAC library Tribolium castaneum genomic, genomic survey sequence.    42   9.7    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q20117) RecName: Full=Glutamate--cysteine ligase;          EC=6...    49   5e-05
T21908(T21908)hypothetical protein F37B12.2 - Caenorhabditis ele...    49   5e-05
D55676_1(D55676|pid:none) Schizosaccharomyces pombe gene for gam...    45   8e-04
BT045862_1(BT045862|pid:none) Salmo salar clone ssal-rgf-535-033...    41   0.014
AY371485_1(AY371485|pid:none) Leishmania donovani gamma glutamyl...    40   0.019
AM502236_167(AM502236|pid:none) Leishmania infantum chromosome 18.     40   0.019
EU659817_1(EU659817|pid:none) Aiptasia pallida glutamate-cystein...    39   0.054
(P97494) RecName: Full=Glutamate--cysteine ligase catalytic subu...    39   0.054
AF244351_1(AF244351|pid:none) Drosophila melanogaster gamma-glut...    39   0.071
AE017356_35(AE017356|pid:none) Cryptococcus neoformans var. neof...    39   0.071

 psg: 0.83  gvh: 0.49  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHR861 is nuc

>CHR861Z.Seq
NNNNNNNNNNATGAAACNACCGAATTGGNTAATAAANATATTAAATTCNTTTCAAANANA
GCNTNTGGNGAAATTNAATCNATTTCNACTTGGNCAANANAATTTGTTNAAAATNATCCN
GCCTACNATCATGATTCCNTNGTAAATGATGAAATTCNAGNTGATTATTTTCAACGTTGT
TTANATATTTCAAANGGNACCNTTTATGATAGNTCNATTCAAGGCGATAAANATGATTAT
TATTGTTAAATATTNTATTTTNTCCTATTCCNCNACTANANANANATTTGNGNGNATNTT
CNATTTTNAATTAATTTTAAAAATATAATAATAATAAAACAATAATNATAATTNAAAAAA
AAAAAGGTAAAAAATGGAAAATAAATTAAATCTCAATATAAAAATAATAATCAAATAAAA
AATAAAAAAAATAAAAAAAATAAAACATTTATTT