NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR858
Library CH
(Link to library)
Clone ID CHR858
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHR858P
(Link to Original site)
Representative DNA sequence 
>CHR858 (CHR858Q) /CSM/CH/CHR8-C/CHR858Q.Seq.d/
ATTAATTATTTTTTTTGTTATTGTATTATTTTGTGTTGTTGGATCATTATCAGCATCATT
ATGTAAATATCCAGGTTATTCAACTCAAGGTGTTACAAAAACAAATAATGGTTATGAGGC
AACACTTAACCTTATTTCAGCAGGTCCATATGGTAACGATATAGAACAATTAAATTTTCA
ATTAACTTTTGAAACTAGTCAAATTTTTAGAGTTAGAATTACTGACCCAAATAATCAAAG
ATGGGAAGTCCCACCAACTGTTAATCAATTAGTTGGAGAAAATCCAGATTCAACTGATTA
TATAATTGAATTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGTGA
AGTTTTATTTAATACAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAA
TTATTATTTAGAATTAAGTACATCATTCACAGAGAGTAATCCAAATATTTATGGTTTAGG
AGAACGTACAAGTCAATTAAGATTATTTAATAATTTTACATATACTTTATTTGCAAAAGA
TCAAGGTACAGCAAGTATACCAAATATTAATTTATATGGTTCACATCCATTTTATTTACA
ACTTTCATCAXXXXXXXXXXGGTGATCCAGTTGTTAGACCATTATTCTTTGAATATCCAT
CAGATCCAAATACTTTTGCAATTGATCAACAATTTTTAGTTGGTACAGGTTTAATGGTAT
CACCAGTTCTCACTCAAGGTGCTACCACAGTGAATGCTTACTTCCCAAATGATATCTGGT
ATGAATATGGTAATGGTTCATTGGTTCAATCAGTTGGTACCCATCAAACTTTAAATGCTC
CATTCGATGTAATCAACGTTCATATGCGTGGTGGTAATATCATTCCAACTCAACCAACCT
CCTCATATGTTACACCAGTTGATGGTATTCCAATTACCACTAAAATCTCTAGAACTTTAC
CATTTGAATTGATTATTGCCTTGGATTCTTCATTACAAGCAACTGGTCAATTATTCTTGG
ATGATGGTGAATCAATTCAAACCTATGTTGATAATAAATACTCTTTCATTCAATTCGATG
TTGTCTCCTCACCATCTTCATCTGCCTACAAATTACAATCAACCATTCTCAATAACAATT
ATAATGGTACCGCTTCTTTAATCATTAATTCTATCCAAATCTACGGTTCGCCATCAGTTC
AACAAGTCATTGTTAATGGTAGCCCAATCAATTCATTTAATGCTGTTTCTGATTCAACTC
TCTCTGTTTCAAATTTACAACTTGCTTTAGATGAATCCTTTGAAGTTGATTTTGTATTAT
ATTAAAAATTATCAACAAATAAAATTAAAATNAGTTATATTTTTTTTAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
LIIFFVIVLFCVVGSLSASLCKYPGYSTQGVTKTNNGYEATLNLISAGPYGNDIEQLNFQ
LTFETSQIFRVRITDPNNQRWEVPPTVNQLVGENPDSTDYIIEFTNNPFGFAATRISTGE
VLFNTTQPSDCSFNGLIYSNYYLELSTSFTESNPNIYGLGERTSQLRLFNNFTYTLFAKD
QGTASIPNINLYGSHPFYLQLSS---

---GDPVVRPLFFEYPSDPNTFAIDQQFLVGTGLMVSPVLTQGATTVNAYFPNDIWYEYG
NGSLVQSVGTHQTLNAPFDVINVHMRGGNIIPTQPTSSYVTPVDGIPITTKISRTLPFEL
IIALDSSLQATGQLFLDDGESIQTYVDNKYSFIQFDVVSSPSSSAYKLQSTILNNNYNGT
ASLIINSIQIYGSPSVQQVIVNGSPINSFNAVSDSTLSVSNLQLALDESFEVDFVLY*kl
stnkikxsyiffk
Translated Amino Acid sequence (All Frames) 
Frame A:
inyffcyciilccwiiisiim*isrlfnsrcyknk*wl*gnt*pyfsrsiw*ryrtikfs
inf*n*snf*s*ny*pk*skmgsptnc*siswrksrfn*lyn*iyk*siwfcsnsyfnw*
sfi*ynstk*lfi*wfnlfkllfrikyiihre*skylwfrrtyksikii**fyiyfickr
sryskytky*fiwftsilfttfi---

---GDPVVRPLFFEYPSDPNTFAIDQQFLVGTGLMVSPVLTQGATTVNAYFPNDIWYEYG
NGSLVQSVGTHQTLNAPFDVINVHMRGGNIIPTQPTSSYVTPVDGIPITTKISRTLPFEL
IIALDSSLQATGQLFLDDGESIQTYVDNKYSFIQFDVVSSPSSSAYKLQSTILNNNYNGT
ASLIINSIQIYGSPSVQQVIVNGSPINSFNAVSDSTLSVSNLQLALDESFEVDFVLY*kl
stnkikxsyiffk

Frame B:
LIIFFVIVLFCVVGSLSASLCKYPGYSTQGVTKTNNGYEATLNLISAGPYGNDIEQLNFQ
LTFETSQIFRVRITDPNNQRWEVPPTVNQLVGENPDSTDYIIEFTNNPFGFAATRISTGE
VLFNTTQPSDCSFNGLIYSNYYLELSTSFTESNPNIYGLGERTSQLRLFNNFTYTLFAKD
QGTASIPNINLYGSHPFYLQLSS---

---viqlldhyslnihqiqillqlinnf*lvqv*wyhqfslkvlpq*mltsqmisgmnmv
mvhwfnqlvpikl*mlhsm*stficvvvisfqlnqpphmlhqlmvfqlplkslelyhln*
llpwilhykqlvnyswmmvnqfkpmliintlsfnsmlsphhlhlptnynqpfsitiimvp
ll*slilskstvrhqfnksllmvaqsihlmlfliqlslfqiynll*mnplklilyyikny
qqiklkxviffl

Frame C:
*lfflllyyfvlldhyqhhyvniqviqlkvlqkqimvmrqhltlfqqvhmvti*nn*ifn
*llklvkflelelltqiikdgkshqllin*lekiqiqlii*lnlqiihlvlqqlvfqlvk
fyliqlnqvivhlmv*fiqiii*n*vhhsqrviqifmv*envqvn*dyliilhilylqki
kvqqvyqiliymvhihfiynfh---

---*ssc*tiil*isirskyfcn*stifswyrfngitsshsrcyhsecllpk*ylv*iw*
wfigsiswypsnfkcsircnqrsyaww*yhsnstnllicyts*wysnyh*nl*nfti*id
yclgffitsnwsiilg*w*insnlc***ilfhsircclltificlqitinhsq*ql*wyr
ffnh*fypnlrfaisstshc*w*pnqfi*ccf*fnslcfkfttcfr*il*s*fciilkii
nk*n*nxlyff*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR858 (CHR858Q) /CSM/CH/CHR8-C/CHR858Q.Seq.d/                       2597   0.0
AHA841 (AHA841Q) /CSM/AH/AHA8-B/AHA841Q.Seq.d/                       1451   0.0
CHR320 (CHR320Q) /CSM/CH/CHR3-A/CHR320Q.Seq.d/                       1445   0.0
SHJ811 (SHJ811Q) /CSM/SH/SHJ8-A/SHJ811Q.Seq.d/                       1431   0.0
SHG509 (SHG509Q) /CSM/SH/SHG5-A/SHG509Q.Seq.d/                       1423   0.0
CHM276 (CHM276Q) /CSM/CH/CHM2-D/CHM276Q.Seq.d/                       1417   0.0
AHR217 (AHR217Q) /CSM/AH/AHR2-A/AHR217Q.Seq.d/                       1415   0.0
SHJ667 (SHJ667Q) /CSM/SH/SHJ6-C/SHJ667Q.Seq.d/                       1413   0.0
AHF873 (AHF873Q) /CSM/AH/AHF8-D/AHF873Q.Seq.d/                       1411   0.0
AHM502 (AHM502Q) /CSM/AH/AHM5-A/AHM502Q.Seq.d/                       1409   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   0.001  20
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    42   0.007  19
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    40   0.009  10
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    40   0.019  10
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    36   0.038  12
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    34   0.040  13
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   0.047  13
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    30   0.053  17
CX454451|CX454451.2 JGI_XZG56192.fwd NIH_XGC_tropGas7 Xenopus tropicalis cDNA clone IMAGE:7570425 5', mRNA sequence.    50   0.12   1
BE323805|BE323805.2 NF010E10PL1F1071 Phosphate starved leaf Medicago truncatula cDNA clone NF010E10PL 5', mRNA sequence.    50   0.12   1
dna update 2005.11.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF118226_1(AF118226|pid:none) Hordeum vulgare high pI alpha-gluc...   149   3e-34
AB000967_1(AB000967|pid:none) Coturnix japonica GAAI mRNA for ac...   147   1e-33
(Q43763) RecName: Full=Alpha-glucosidase;          EC=3.2.1.20; ...   145   3e-33
AB057452_1(AB057452|pid:none) Physcomitrella patens subsp. paten...   139   3e-31
AF016833_1(AF016833|pid:none) Homo sapiens maltase-glucoamylase ...   137   9e-31
EU955937_1(EU955937|pid:none) Zea mays clone 1553282 unknown mRNA.    136   1e-30
(Q653V7) RecName: Full=Probable alpha-glucosidase Os06g0675700; ...   135   2e-30
AB006754_1(AB006754|pid:none) Coturnix japonica GAAII mRNA for a...   135   3e-30
(O43451) RecName: Full=Maltase-glucoamylase, intestinal; Include...   135   3e-30
AF448201_1(AF448201|pid:none) Pinus pinaster putative alpha-xylo...   134   9e-30
protein update 2009. 4.13
PSORT 

 psg: 1.02  gvh: 0.74  alm: 0.40  top: 0.60  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: extracellular, including cell wall
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: endoplasmic reticulum

>> prediction for CHR858 is exc
5' end seq. ID CHR858F
5' end seq. 
>CHR858F.Seq
ATTAATTATTTTTTTTGTTATTGTATTATTTTGTGTTGTTGGATCATTATCAGCATCATT
ATGTAAATATCCAGGTTATTCAACTCAAGGTGTTACAAAAACAAATAATGGTTATGAGGC
AACACTTAACCTTATTTCAGCAGGTCCATATGGTAACGATATAGAACAATTAAATTTTCA
ATTAACTTTTGAAACTAGTCAAATTTTTAGAGTTAGAATTACTGACCCAAATAATCAAAG
ATGGGAAGTCCCACCAACTGTTAATCAATTAGTTGGAGAAAATCCAGATTCAACTGATTA
TATAATTGAATTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGTGA
AGTTTTATTTAATACAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAA
TTATTATTTAGAATTAAGTACATCATTCACAGAGAGTAATCCAAATATTTATGGTTTAGG
AGAACGTACAAGTCAATTAAGATTATTTAATAATTTTACATATACTTTATTTGCAAAAGA
TCAAGGTACAGCAAGTATACCAAATATTAATTTATATGGTTCACATCCATTTTATTTACA
ACTTTCATCANNNNNNNNNN
Length of 5' end seq. 620
3' end seq. ID CHR858Z
3' end seq. 
>CHR858Z.Seq
NNNNNNNNNNGGTGATCCAGTTGTTAGACCATTATTCTTTGAATATCCATCAGATCCAAA
TACTTTTGCAATTGATCAACAATTTTTAGTTGGTACAGGTTTAATGGTATCACCAGTTCT
CACTCAAGGTGCTACCACAGTGAATGCTTACTTCCCAAATGATATCTGGTATGAATATGG
TAATGGTTCATTGGTTCAATCAGTTGGTACCCATCAAACTTTAAATGCTCCATTCGATGT
AATCAACGTTCATATGCGTGGTGGTAATATCATTCCAACTCAACCAACCTCCTCATATGT
TACACCAGTTGATGGTATTCCAATTACCACTAAAATCTCTAGAACTTTACCATTTGAATT
GATTATTGCCTTGGATTCTTCATTACAAGCAACTGGTCAATTATTCTTGGATGATGGTGA
ATCAATTCAAACCTATGTTGATAATAAATACTCTTTCATTCAATTCGATGTTGTCTCCTC
ACCATCTTCATCTGCCTACAAATTACAATCAACCATTCTCAATAACAATTATAATGGTAC
CGCTTCTTTAATCATTAATTCTATCCAAATCTACGGTTCGCCATCAGTTCAACAAGTCAT
TGTTAATGGTAGCCCAATCAATTCATTTAATGCTGTTTCTGATTCAACTCTCTCTGTTTC
AAATTTACAACTTGCTTTAGATGAATCCTTTGAAGTTGATTTTGTATTATATTAAAAATT
ATCAACAAATAAAATTAAAATNAGTTATATTTTTTTTAAA
Length of 3' end seq. 760
Connected seq. ID CHR858P
Connected seq. 
>CHR858P.Seq
ATTAATTATTTTTTTTGTTATTGTATTATTTTGTGTTGTTGGATCATTATCAGCATCATT
ATGTAAATATCCAGGTTATTCAACTCAAGGTGTTACAAAAACAAATAATGGTTATGAGGC
AACACTTAACCTTATTTCAGCAGGTCCATATGGTAACGATATAGAACAATTAAATTTTCA
ATTAACTTTTGAAACTAGTCAAATTTTTAGAGTTAGAATTACTGACCCAAATAATCAAAG
ATGGGAAGTCCCACCAACTGTTAATCAATTAGTTGGAGAAAATCCAGATTCAACTGATTA
TATAATTGAATTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGTGA
AGTTTTATTTAATACAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAA
TTATTATTTAGAATTAAGTACATCATTCACAGAGAGTAATCCAAATATTTATGGTTTAGG
AGAACGTACAAGTCAATTAAGATTATTTAATAATTTTACATATACTTTATTTGCAAAAGA
TCAAGGTACAGCAAGTATACCAAATATTAATTTATATGGTTCACATCCATTTTATTTACA
ACTTTCATCA----------GGTGATCCAGTTGTTAGACCATTATTCTTTGAATATCCAT
CAGATCCAAATACTTTTGCAATTGATCAACAATTTTTAGTTGGTACAGGTTTAATGGTAT
CACCAGTTCTCACTCAAGGTGCTACCACAGTGAATGCTTACTTCCCAAATGATATCTGGT
ATGAATATGGTAATGGTTCATTGGTTCAATCAGTTGGTACCCATCAAACTTTAAATGCTC
CATTCGATGTAATCAACGTTCATATGCGTGGTGGTAATATCATTCCAACTCAACCAACCT
CCTCATATGTTACACCAGTTGATGGTATTCCAATTACCACTAAAATCTCTAGAACTTTAC
CATTTGAATTGATTATTGCCTTGGATTCTTCATTACAAGCAACTGGTCAATTATTCTTGG
ATGATGGTGAATCAATTCAAACCTATGTTGATAATAAATACTCTTTCATTCAATTCGATG
TTGTCTCCTCACCATCTTCATCTGCCTACAAATTACAATCAACCATTCTCAATAACAATT
ATAATGGTACCGCTTCTTTAATCATTAATTCTATCCAAATCTACGGTTCGCCATCAGTTC
AACAAGTCATTGTTAATGGTAGCCCAATCAATTCATTTAATGCTGTTTCTGATTCAACTC
TCTCTGTTTCAAATTTACAACTTGCTTTAGATGAATCCTTTGAAGTTGATTTTGTATTAT
ATTAAAAATTATCAACAAATAAAATTAAAATNAGTTATATTTTTTTTAAA
Length of connected seq. 1360
Full length Seq ID -
Full length Seq. -
Length of full length seq. -