CHR853 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHR853
Library	CH (Link to library)
Clone ID	CHR853 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U10883-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHR8-C/CHR853Q.Seq.d/
Representative seq. ID	CHR853P (Link to Original site)
Representative DNA sequence	>CHR853 (CHR853Q) /CSM/CH/CHR8-C/CHR853Q.Seq.d/ AATAATAATAATAATATAAGTCCAAATACAAGTACAAGCAATTTATCAACATCTTTACAA AATACATCAAGTGGTGCTTCATTGACATCCATTTTTAATCCGCCATCATCTTCACTACCA CCGCAACCACAACCACCATCATCATCATTACCATCTACAAATAATTTATTACAACAACAA CAACAATTATCATCAACATCATTAAATCAATCACAAACATCACAACAATCATCAACAACA GCACAATCACCACCATCGTTTGGATTTGGTAGTTTTAGTAAGCGTGGTAGTATGAATTTA GGTCAAAGTAACTCAACAATGTCGTCAAGTCATATGAATGAAAAGGGTGAATTTACATTC AAGAATTTCATTCCAAATTCACAAAGAAAGAATCATTTATTAACTGATAAAAATTCACAA AGACTTTCAAAAGATGATTTCTTTTCATCACAAAATACTCATCGTAGATGGGAGGAATAT GTTAAAAATATATTACCAACTGAACAAGAATTAATTAAAGAAAAAAAAGAAXXXXXXXXX XAATGACTAGAATTAATCGTAAATACTCTTCTGATCTTAAATCAACTGAATGTTGTTTAT TAGATTCACCAGATGTTCTCTATGTTTGGGTTGGTTCAAATTGTTCAGCTTCCTTGGAGA ATATTGTACTTATCTTTGTTAATGACTATTGTAACTATTATAGTATCCCAATTGATTCCA TTCAAAAGGTAGTTCAATACAATGAATCAATTGAATTCAAATTAAGATTTAAAGCTTGGG ATAGAAAAGAGGAATGGGTTGATCCTCATGAAACTCGTCAATGCCAAGTTGCCCTACAAA GAACTTTACTCTTCCGTAAACAATATGAAGAGGAACAACAACTATTCAAAGAATATATGG ACTATGCATATTCACTAGGTGATGAAGATGAATTGGAAGACTTTGAAACTTGGACTCTCA TTAAAAAAGGTTATCTAGATTATCATGGTGAATTAAATCTAAGTTATAGTGATCAATTAA ATGGTACTCTAAGTAGAAGTTTAAGTAATAGTAGTAATGGTAGTAGTAATAGTAGTACTT CTCCAAATTTAAATGCTCATATCTCTTCTTCACCATCTTTATCAAATGGTAATCTTTATA ATTATACAAATGGTAATGGTGGTAGTACAAAACCACCACTATCAAAAGATAGTCCTTCTT CACCACCAACTTTATCTCAACAACAACATACTAAAAATAAGGTTTACCACCTTTACCAAA
sequence update	2002.10.25
Translated Amino Acid sequence	NNNNNISPNTSTSNLSTSLQNTSSGASLTSIFNPPSSSLPPQPQPPSSSLPSTNNLLQQQ QQLSSTSLNQSQTSQQSSTTAQSPPSFGFGSFSKRGSMNLGQSNSTMSSSHMNEKGEFTF KNFIPNSQRKNHLLTDKNSQRLSKDDFFSSQNTHRRWEEYVKNILPTEQELIKEKKE--- ---MTRINRKYSSDLKSTECCLLDSPDVLYVWVGSNCSASLENIVLIFVNDYCNYYSIPI DSIQKVVQYNESIEFKLRFKAWDRKEEWVDPHETRQCQVALQRTLLFRKQYEEEQQLFKE YMDYAYSLGDEDELEDFETWTLIKKGYLDYHGELNLSYSDQLNGTLSRSLSNSSNGSSNS STSPNLNAHISSSPSLSNGNLYNYTNGNGGSTKPPLSKDSPSSPPTLSQQQHTKNKVYHL YQ
Translated Amino Acid sequence (All Frames)	Frame A: NNNNNISPNTSTSNLSTSLQNTSSGASLTSIFNPPSSSLPPQPQPPSSSLPSTNNLLQQQ QQLSSTSLNQSQTSQQSSTTAQSPPSFGFGSFSKRGSMNLGQSNSTMSSSHMNEKGEFTF KNFIPNSQRKNHLLTDKNSQRLSKDDFFSSQNTHRRWEEYVKNILPTEQELIKEKKE--- ---ndnsilfsinmlfirftrcslclgwfklfsflgeyctylc*llllypn fhskgssiqiniqikislgkrgmgssnssmpscptknftlptirgtttiqr iyglciftr*rigrlnldshkrlsrlswiksklsikwyskkfk**w** yfskfkcsylfftifikwsllykwwwyktttikrsffttnfistttykglpp lp Frame B: iiiiivqiqvqaiyqhlykihqvvlhhpflirhhlhyhrnhnhhhhhyhlqiiyynnn nnyhqhhinhkhhnnhqqqhnhhhrldlvvlvsvvvivkvtqqcrqvimkrvnlhs risfqihkeriiylikihkdfqkmisfhhkilivdgrnmlkiyyqlnknlkkkk--- ---MTRINRKYSSDLKSTECCLLDSPDVLYVWVGSNCSASLENIVLIFVNDYCNYYSIPI DSIQKVVQYNESIEFKLRFKAWDRKEEWVDPHETRQCQVALQRTLLFRKQYEEEQQLFKE YMDYAYSLGDEDELEDFETWTLIKKGYLDYHGELNLSYSDQLNGTLSRSLSNSSNGSSNS STSPNLNAHISSSPSLSNGNLYNYTNGNGGSTKPPLSKDSPSSPPTLSQQQHTKNKVYHL YQ Frame C: ***ykskykykqfiniftkyikwcfidihfsaiiftttattttiiiitiykfitttt tiiiniiksitnittiinnstittivwiwf*awyefrsklnnvvksyekgiyiq efhskftkkesfinkftktfkrflfitkyssmggickyitntrinrkkr--- ---lelivntllilnqlnvvyihqmfsmfglvqivqlpwrilylsllmtivtiivsql ipfkrfntmnqlnsndlklgiekrnglilmklvnaklpykelyssvnnmkrnnnyskn iwtmhihvmkmnwktlklglslkkviiimvnivivinmvlvevvivvmvvviv vllqimlisllhhlyqmvifiiiqmvmvvvqnhhyqkivllhhqlylnnnilkirfttf tk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SSG485 (SSG485Q) /CSM/SS/SSG4-D/SSG485Q.Seq.d/ 991 0.0 SHA688 (SHA688Q) /CSM/SH/SHA6-D/SHA688Q.Seq.d/ 991 0.0 CHR853 (CHR853Q) /CSM/CH/CHR8-C/CHR853Q.Seq.d/ 991 0.0 CFF766 (CFF766Q) /CSM/CF/CFF7-C/CFF766Q.Seq.d/ 991 0.0 AHM348 (AHM348Q) /CSM/AH/AHM3-B/AHM348Q.Seq.d/ 991 0.0 AHH412 (AHH412Q) /CSM/AH/AHH4-A/AHH412Q.Seq.d/ 991 0.0 AHF696 (AHF696Q) /CSM/AH/AHF6-D/AHF696Q.Seq.d/ 983 0.0 AHD330 (AHD330Q) /CSM/AH/AHD3-B/AHD330Q.Seq.d/ 983 0.0 CHH371 (CHH371Q) /CSM/CH/CHH3-C/CHH371Q.Seq.d/ 922 0.0 AHL606 (AHL606Q) /CSM/AH/AHL6-A/AHL606Q.Seq.d/ 922 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AQ506689\|AQ506689.1 RPCI-11-281H3.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-281H3,genomic survey sequence. 62 3e-05 1 AC090111\|AC090111.1 Homo sapiens chromosome 21 clone unknown, complete sequence. 62 3e-05 1 AP000466\|AP000466.1 Homo sapiens genomic DNA, chromosome 21q22.1, clone:B140B9. 62 3e-05 1 AP001712\|AP001712.1 Homo sapiens genomic DNA, chromosome 21q, section 56/105. 62 3e-05 1 AC026776\|AC026776.4 Homo sapiens chromosome 21 clone CTC-304G18, complete sequence. 62 3e-05 1 AC097306\|AC097306.6 Rattus norvegicus clone CH230-36A16, * SEQUENCING IN PROGRESS , 3 unordered pieces. 58 5e-04 1 AC094435\|AC094435.4 Rattus norvegicus clone CH230-4F14, SEQUENCING IN PROGRESS *, 1 ordered piece. 58 5e-04 1 AC157253\|AC157253.2 Rhinolophus ferrumequinum clone VMRC7-109D3, WORKING DRAFT SEQUENCE, 5 ordered pieces. 44 0.001 2 AC162747\|AC162747.2 Loxodonta africana clone VMRC15-408P6, WORKING DRAFT SEQUENCE, 6 ordered pieces. 44 0.001 2 AU292920\|AU292920.1 Zinnia elegans cDNA, clone:Z7706, primer:M13 forward, sequence 2. 46 0.002 2
dna update	2005.11.25
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value T30330(T30330) gelsolin-related protein GRP125 - slime mold (Dic... 41 0.074 (Q27319) RecName: Full=Gelsolin, cytoplasmic; AltName: Full=Acti... 40 0.13 S41391(S41391)gelsolin - American lobster 40 0.13 AY261827_1(AY261827\|pid:none) Ciona intestinalis cytoplasmic gel... 39 0.48 FJ438495_1(FJ438495\|pid:none) Epinephelus coioides scinderin-lik... 39 0.48 DQ453500_1(DQ453500\|pid:none) Heliocidaris tuberculata advillin ... 38 0.63 DQ453501_1(DQ453501\|pid:none) Heliocidaris erythrogramma advilli... 38 0.63 AY052174_1(AY052174\|pid:none) Drosophila simulans isolate sim1 g... 37 1.4 AY052178_1(AY052178\|pid:none) Drosophila simulans isolate sim5 g... 37 1.4 AF465625_1(AF465625\|pid:none) Dermatophagoides farinae gelsolin-... 37 1.4
protein update	2009. 4.13
PSORT	psg: 0.75 gvh: 0.54 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.75 mip: 0.16 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 84.0 %: mitochondrial 8.0 %: cytoplasmic 8.0 %: nuclear >> prediction for CHR853 is mit
5' end seq. ID	CHR853F
5' end seq.	>CHR853F.Seq AATAATAATAATAATATAAGTCCAAATACAAGTACAAGCAATTTATCAACATCTTTACAA AATACATCAAGTGGTGCTTCATTGACATCCATTTTTAATCCGCCATCATCTTCACTACCA CCGCAACCACAACCACCATCATCATCATTACCATCTACAAATAATTTATTACAACAACAA CAACAATTATCATCAACATCATTAAATCAATCACAAACATCACAACAATCATCAACAACA GCACAATCACCACCATCGTTTGGATTTGGTAGTTTTAGTAAGCGTGGTAGTATGAATTTA GGTCAAAGTAACTCAACAATGTCGTCAAGTCATATGAATGAAAAGGGTGAATTTACATTC AAGAATTTCATTCCAAATTCACAAAGAAAGAATCATTTATTAACTGATAAAAATTCACAA AGACTTTCAAAAGATGATTTCTTTTCATCACAAAATACTCATCGTAGATGGGAGGAATAT GTTAAAAATATATTACCAACTGAACAAGAATTAATTAAAGAAAAAAAAGAANNNNNNNNN N
Length of 5' end seq.	541
3' end seq. ID	CHR853Z
3' end seq.	>CHR853Z.Seq NNNNNNNNNNAATGACTAGAATTAATCGTAAATACTCTTCTGATCTTAAATCAACTGAAT GTTGTTTATTAGATTCACCAGATGTTCTCTATGTTTGGGTTGGTTCAAATTGTTCAGCTT CCTTGGAGAATATTGTACTTATCTTTGTTAATGACTATTGTAACTATTATAGTATCCCAA TTGATTCCATTCAAAAGGTAGTTCAATACAATGAATCAATTGAATTCAAATTAAGATTTA AAGCTTGGGATAGAAAAGAGGAATGGGTTGATCCTCATGAAACTCGTCAATGCCAAGTTG CCCTACAAAGAACTTTACTCTTCCGTAAACAATATGAAGAGGAACAACAACTATTCAAAG AATATATGGACTATGCATATTCACTAGGTGATGAAGATGAATTGGAAGACTTTGAAACTT GGACTCTCATTAAAAAAGGTTATCTAGATTATCATGGTGAATTAAATCTAAGTTATAGTG ATCAATTAAATGGTACTCTAAGTAGAAGTTTAAGTAATAGTAGTAATGGTAGTAGTAATA GTAGTACTTCTCCAAATTTAAATGCTCATATCTCTTCTTCACCATCTTTATCAAATGGTA ATCTTTATAATTATACAAATGGTAATGGTGGTAGTACAAAACCACCACTATCAAAAGATA GTCCTTCTTCACCACCAACTTTATCTCAACAACAACATACTAAAAATAAGGTTTACCACC TTTACCAAA
Length of 3' end seq.	729
Connected seq. ID	CHR853P
Connected seq.	>CHR853P.Seq AATAATAATAATAATATAAGTCCAAATACAAGTACAAGCAATTTATCAACATCTTTACAA AATACATCAAGTGGTGCTTCATTGACATCCATTTTTAATCCGCCATCATCTTCACTACCA CCGCAACCACAACCACCATCATCATCATTACCATCTACAAATAATTTATTACAACAACAA CAACAATTATCATCAACATCATTAAATCAATCACAAACATCACAACAATCATCAACAACA GCACAATCACCACCATCGTTTGGATTTGGTAGTTTTAGTAAGCGTGGTAGTATGAATTTA GGTCAAAGTAACTCAACAATGTCGTCAAGTCATATGAATGAAAAGGGTGAATTTACATTC AAGAATTTCATTCCAAATTCACAAAGAAAGAATCATTTATTAACTGATAAAAATTCACAA AGACTTTCAAAAGATGATTTCTTTTCATCACAAAATACTCATCGTAGATGGGAGGAATAT GTTAAAAATATATTACCAACTGAACAAGAATTAATTAAAGAAAAAAAAGAA--------- -AATGACTAGAATTAATCGTAAATACTCTTCTGATCTTAAATCAACTGAATGTTGTTTAT TAGATTCACCAGATGTTCTCTATGTTTGGGTTGGTTCAAATTGTTCAGCTTCCTTGGAGA ATATTGTACTTATCTTTGTTAATGACTATTGTAACTATTATAGTATCCCAATTGATTCCA TTCAAAAGGTAGTTCAATACAATGAATCAATTGAATTCAAATTAAGATTTAAAGCTTGGG ATAGAAAAGAGGAATGGGTTGATCCTCATGAAACTCGTCAATGCCAAGTTGCCCTACAAA GAACTTTACTCTTCCGTAAACAATATGAAGAGGAACAACAACTATTCAAAGAATATATGG ACTATGCATATTCACTAGGTGATGAAGATGAATTGGAAGACTTTGAAACTTGGACTCTCA TTAAAAAAGGTTATCTAGATTATCATGGTGAATTAAATCTAAGTTATAGTGATCAATTAA ATGGTACTCTAAGTAGAAGTTTAAGTAATAGTAGTAATGGTAGTAGTAATAGTAGTACTT CTCCAAATTTAAATGCTCATATCTCTTCTTCACCATCTTTATCAAATGGTAATCTTTATA ATTATACAAATGGTAATGGTGGTAGTACAAAACCACCACTATCAAAAGATAGTCCTTCTT CACCACCAACTTTATCTCAACAACAACATACTAAAAATAAGGTTTACCACCTTTACCAAA
Length of connected seq.	1250
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas