CHR851
Library CH
(Link to library)
Clone ID CHR851
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13076-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHR851 (CHR851Q) /CSM/CH/CHR8-C/CHR851Q.Seq.d/
AAAAAAAGGTATCATTTCATGATTATCTTTTTAAATTATTTTATTATTATTATTTTAGGT
TATGTATACAATTTATGGATTTGATAGTTTTTCAAAAGGAGAGTATTTAGATTTTTTCAC
AAAATTATTATTATCAAACTACGTGAAAGAGATTGAACATGTTTTAAATCAACCAGATCC
ATCTTTATTTTATTCTTTAATAGTAGAATTTTCACAAATTTTAGAAGGTGATGTTAATTT
TGGACCATTATTTATAGCAGAACCAAGTAAATTATTACCAATTTTTAATGAAGCATTATT
AATTGCACAAGAAAAGATTGTTGAATTAAATAATATTCAACATATTAAACAAAGTAATTC
ATTTTCTCAAACATCATCGTCATCATCAGTGATTTTCAACAACACAAGAAATAGAAATAT
AATAAAGAGAAATTGTAGAATTAGGGTATGTGATTTACCAAAGTTTAAAGAGATAACACA
TTCATCATTACCTCGATCAAATGATGTTGGTTTATXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
kkgiis*lsf*iillllf*VMYTIYGFDSFSKGEYLDFFTKLLLSNYVKEIEHVLNQPDP
SLFYSLIVEFSQILEGDVNFGPLFIAEPSKLLPIFNEALLIAQEKIVELNNIQHIKQSNS
FSQTSSSSSVIFNNTRNRNIIKRNCRIRVCDLPKFKEITHSSLPRSNDVGL---


Translated Amino Acid sequence (All Frames)
Frame A:
kkryhfmiiflnyfiiiilgyvynlwi**ffkrrvfrffhkiiiiklrerd*tcfkstrs
ifilffnsriftnfrr*c*fwtiiysrtk*iitnf**siinctrkdc*ik*ysty*tk*f
ifsniiviisdfqqhkk*kynkekl*n*gm*ftkv*rdntfiitsik*cwf---


Frame B:
kkgiis*lsf*iillllf*VMYTIYGFDSFSKGEYLDFFTKLLLSNYVKEIEHVLNQPDP
SLFYSLIVEFSQILEGDVNFGPLFIAEPSKLLPIFNEALLIAQEKIVELNNIQHIKQSNS
FSQTSSSSSVIFNNTRNRNIIKRNCRIRVCDLPKFKEITHSSLPRSNDVGL---


Frame C:
kkvsfhdylfklfyyyyfrlciqfmdlivfqkesi*ifsqnyyyqtt*krlnmf*inqih
lyfil***nfhkf*kvmlildhyl*qnqvnyyqflmkhy*lhkkrlln*iifnilnkvih
flkhhrhhq*fsttqeiei**reivelgyviyqslkr*hihhyldqmmlv---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR851 (CHR851Q) /CSM/CH/CHR8-C/CHR851Q.Seq.d/ 908 0.0
CHN112 (CHN112Q) /CSM/CH/CHN1-A/CHN112Q.Seq.d/ 892 0.0
SFJ166 (SFJ166Q) /CSM/SF/SFJ1-C/SFJ166Q.Seq.d/ 42 0.008
AFL176 (AFL176Q) /CSM/AF/AFL1-D/AFL176Q.Seq.d/ 42 0.008
AFJ823 (AFJ823Q) /CSM/AF/AFJ8-A/AFJ823Q.Seq.d/ 42 0.008
CHR870 (CHR870Q) /CSM/CH/CHR8-C/CHR870Q.Seq.d/ 40 0.033
VFL256 (VFL256Q) /CSM/VF/VFL2-C/VFL256Q.Seq.d/ 38 0.13
VFJ332 (VFJ332Q) /CSM/VF/VFJ3-B/VFJ332Q.Seq.d/ 38 0.13
SFC535 (SFC535Q) /CSM/SF/SFC5-B/SFC535Q.Seq.d/ 38 0.13
AHO116 (AHO116Q) /CSM/AH/AHO1-A/AHO116Q.Seq.d/ 38 0.13

own update 2003. 5.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC154350|AC154350.3 Mus musculus BAC clone RP23-225B15 from chromosome 13, complete sequence. 56 8e-04 1
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 32 0.067 17
AC151273|AC151273.2 Mus musculus chromosome 17 clone RP24-237J7, complete sequence. 34 0.082 6
AC004821|AC004821.3 Homo sapiens chromosome 5 clone RP1-98O22, complete sequence. 44 0.15 3
AP001536|AP001536.2 Homo sapiens genomic DNA, chromosome 18q21 clone:RP11-890O5, WORKING DRAFT SEQUENCE, 21 unordered pieces. 42 0.16 3
BX248585|BX248585.1 Blochmannia floridanus complete genome; segment 2/3. 38 0.16 8
AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 34 0.16 7
AC145512|AC145512.21 Medicago truncatula clone mth2-19o18, WORKING DRAFT SEQUENCE, 3 unordered pieces. 48 0.18 1
AC130052|AC130052.3 Rattus norvegicus clone CH230-242L5, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 48 0.18 1
AC095389|AC095389.6 Rattus norvegicus clone CH230-6O10, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 48 0.18 1
dna update 2005.11.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q6NRM6) RecName: Full=DNA replication licensing factor MCM9; Al... 43 0.004
AL845301_2(AL845301|pid:none) Zebrafish DNA sequence from clone ... 42 0.007
AK132731_1(AK132731|pid:none) Mus musculus adult male testis cDN... 35 0.83
AL844509_251(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 34 2.4
AL133104_1(AL133104|pid:none) Homo sapiens mRNA; cDNA DKFZp434E1... 33 3.1
(Q5R4M2) RecName: Full=Serine/threonine-protein kinase ULK4; ... 33 3.1
(Q96C45) RecName: Full=Serine/threonine-protein kinase ULK4; ... 33 3.1
AK093396_1(AK093396|pid:none) Homo sapiens cDNA FLJ36077 fis, cl... 33 3.1
BC040739_1(BC040739|pid:none) Homo sapiens unc-51-like kinase 4 ... 33 4.1
CT573326_2310(CT573326|pid:none) Pseudomonas entomophila str. L4... 33 5.4
protein update 2009. 4.13
PSORT

psg: 0.75 gvh: 0.36 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
44.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for CHR851 is cyt

5' end seq. ID CHR851F
5' end seq.
>CHR851F.Seq
AAAAAAAGGTATCATTTCATGATTATCTTTTTAAATTATTTTATTATTATTATTTTAGGT
TATGTATACAATTTATGGATTTGATAGTTTTTCAAAAGGAGAGTATTTAGATTTTTTCAC
AAAATTATTATTATCAAACTACGTGAAAGAGATTGAACATGTTTTAAATCAACCAGATCC
ATCTTTATTTTATTCTTTAATAGTAGAATTTTCACAAATTTTAGAAGGTGATGTTAATTT
TGGACCATTATTTATAGCAGAACCAAGTAAATTATTACCAATTTTTAATGAAGCATTATT
AATTGCACAAGAAAAGATTGTTGAATTAAATAATATTCAACATATTAAACAAAGTAATTC
ATTTTCTCAAACATCATCGTCATCATCAGTGATTTTCAACAACACAAGAAATAGAAATAT
AATAAAGAGAAATTGTAGAATTAGGGTATGTGATTTACCAAAGTTTAAAGAGATAACACA
TTCATCATTACCTCGATCAAATGATGTTGGTTTATNNNNNNNNNN
Length of 5' end seq. 525
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -