>CHR842 (CHR842Q) /CSM/CH/CHR8-B/CHR842Q.Seq.d/
ATTAAAAAATCCAAATAAACATAAACATAAATATAATAAACATAAAAAATGAGTAAAATC
ATTCACAATTTACAAAACATAGAGTTAGACTCATTAAAAAAACTTGGAGAAGTTACCAAA
TATTTAAATGAACATCCAATGCTTAGATCATTNTTAATTTCCACTGGNCTCATTGGAACC
CTCNAAATTAATTAAATTAATCAAAAATAGAATTAGANATAATACAATTTTAGAAATTGA
TTTNACAAATACAATTGATACATNCTGATGTTGATATTAGTCCAATTGAAAAAATTACTT
GATCCAAATATTATTTCATTTAGATCACTTTTAGATGCAATNGAAAAAAGCAGCAAATGA
TAAGAGGGGTGATTGGTTTAATTGXXXXXXXXXXTGCTAAATTCAATTTGAAAGGAATGT
GGGAAGAGAAGGTTCATGTCAAATTTGATGCCCTCCATTTGAATCCAGATGGTGCCACTG
ACAATTCAACTTACTTCTCCTCATTACACAATTACACAGAAAAGCAATTGGCCGAGGTCA
ATAGTTATATGGATTTCATTTATGAAGATTTCACTAGTAAAGTTAGTAAAGGTCGTAGAT
TAACTCGTGATCAAGTTGAAGAGATTGCTCGTGGTCGTGTTTGGACTGGTGCTCAAGCAT
TAAAACTCTCACTCGTTGATAAATTGGGTGGCTTGAAAGAGGCAATTGAAGTTGCCAAAG
AATTGGTTGGTATCGCATCAAATGTTCAACCACATGTTGTCACCTATCCAAAGGAAACAG
TTTTATCACAATTGGTTGCCTCTAGTGCAAACAATTCTCAAGACCTTGAAAGACGTGGCA
CTCCAGCTCAAGCTTCAATCACTCATTCTGTTGGTGTTTCAACATCAATCTTTACCAAAT
TTTCAACACTTACAAAATTAATTCTTTTACCAAATAATTCAATCTCTTCAATTGCAAATA
CTTTAATTAATAATCAAAAAAATAGTAATATCTTATCAATGAATCAATCTTCATTAATTT
CTTCATCTTTTTAAAATTTTTTTAAAATAAAAATTTAAATAAAATTTAAAATAAATTATA
AG

*kiqinininiinikne*nhsqftkhrvrlikktwrsyqifk*tsna*iixnfhwxhwnp
xn*ln*skielxiiqf*klixqiqlihxdvdispiekit*skyyfi*ITFRCNXKKQQMI
RGVIGLI---

---AKFNLKGMWEEKVHVKFDALHLNPDGATDNSTYFSSLHNYTEKQLAEVNSYMDFIYE
DFTSKVSKGRRLTRDQVEEIARGRVWTGAQALKLSLVDKLGGLKEAIEVAKELVGIASNV
QPHVVTYPKETVLSQLVASSANNSQDLERRGTPAQASITHSVGVSTSIFTKFSTLTKLIL
LPNNSISSIANTLINNQKNSNILSMNQSSLISSSF*nffkiki*ikfkinyk

Frame A:
ikksk*t*t*i**t*kmskiihnlqnieldslkklgevtkylnehpmlrsxlistgligt
lxin*inqk*n*x*ynfrn*fxkyn*yxlmlilvqlkklldpniisfrslldaxekssk*
*eg*lv*l---

---c*iqfernvgregscqi*cppfesrwch*qfnllllitqlhrkaigrgq*lygfhl*
rfh**s**rs*ins*ss*rdcswscldwcssiktltr**igwlergn*scqrigwyrikc
sttcchlskgnsfitigcl*ckqfsrp*ktwhssssfnhsfcwcfninlyqifntykins
ftk*fnlfnckyfn**skk**ylinesifinffiflkff*nknlnki*nkl*

Frame B:
lknpnkhkhkynkhkk*vksftiykt*s*th*knleklpni*mniqcldhx*fplxslep
sklikliknrirxntileidxtntidtx*c*y*sn*knyliqilfhldhf*mqxkkaand
krgdwfn---

---AKFNLKGMWEEKVHVKFDALHLNPDGATDNSTYFSSLHNYTEKQLAEVNSYMDFIYE
DFTSKVSKGRRLTRDQVEEIARGRVWTGAQALKLSLVDKLGGLKEAIEVAKELVGIASNV
QPHVVTYPKETVLSQLVASSANNSQDLERRGTPAQASITHSVGVSTSIFTKFSTLTKLIL
LPNNSISSIANTLINNQKNSNILSMNQSSLISSSF*nffkiki*ikfkinyk

Frame C:
*kiqinininiinikne*nhsqftkhrvrlikktwrsyqifk*tsna*iixnfhwxhwnp
xn*ln*skielxiiqf*klixqiqlihxdvdispiekit*skyyfi*ITFRCNXKKQQMI
RGVIGLI---

---lnsi*kecgkrrfmsnlmpsi*iqmvpltiqltsphytitqksnwprsiviwisfmk
islvklvkvvd*lviklkrllvvvfglvlkh*nshslinwva*krqlklpknwlvshqmf
nhmlspiqrkqfyhnwlplvqtilktlkdvalqlklqslillvfqhqslpnfqhlqn*ff
yqiiqslqlqil*liikkivisyq*inlh*flhlfkiflk*kfk*nlk*ii

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR842 (CHR842Q) /CSM/CH/CHR8-B/CHR842Q.Seq.d/                       1737   0.0
VHJ536 (VHJ536Q) /CSM/VH/VHJ5-B/VHJ536Q.Seq.d/                       1213   0.0
VHE436 (VHE436Q) /CSM/VH/VHE4-B/VHE436Q.Seq.d/                       1213   0.0
SSD325 (SSD325Q) /CSM/SS/SSD3-B/SSD325Q.Seq.d/                       1213   0.0
CHO817 (CHO817Q) /CSM/CH/CHO8-A/CHO817Q.Seq.d/                       1213   0.0
AFK760 (AFK760Q) /CSM/AF/AFK7-C/AFK760Q.Seq.d/                       1213   0.0
VHO671 (VHO671Q) /CSM/VH/VHO6-C/VHO671Q.Seq.d/                       1205   0.0
VHK271 (VHK271Q) /CSM/VH/VHK2-C/VHK271Q.Seq.d/                       1205   0.0
AHJ464 (AHJ464Q) /CSM/AH/AHJ4-C/AHJ464Q.Seq.d/                       1205   0.0
AFJ890 (AFJ890Q) /CSM/AF/AFJ8-D/AFJ890Q.Seq.d/                       1181   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC168107|AC168107.1 Bos taurus clone CH240-204A1, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces.    48   0.39   1
AL935331|AL935331.9 Mouse DNA sequence from clone RP24-264J19 on chromosome 2.    34   0.80   2
AL645545|AL645545.8 Mouse DNA sequence from clone RP23-203J4 on chromosome X.    38   0.85   6
AL513191|AL513191.4 Human DNA sequence from clone RP11-224F24 on chromosome 1.    40   1.0    3
AL391806|AL391806.3 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-442C16.    40   1.1    3
AU242857|AU242857.1 Oryzias latipes cDNA clone:NGY20.01g.          46   1.5    1
AC126140|AC126140.4 Rattus norvegicus clone CH230-101N3, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    46   1.5    1
AC118515|AC118515.4 Rattus norvegicus clone CH230-233A9, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    46   1.5    1
AC096047|AC096047.6 Rattus norvegicus clone CH230-12N19, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46   1.5    1
AC095310|AC095310.5 Rattus norvegicus clone CH230-15J9, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.    46   1.5    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000113_7315(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   100   1e-19
CP000449_864(CP000449|pid:none) Maricaulis maris MCS10, complete...    95   5e-18
CP000580_1064(CP000580|pid:none) Mycobacterium sp. JLS, complete...    94   8e-18
CP000384_1034(CP000384|pid:none) Mycobacterium sp. MCS, complete...    94   8e-18
AE016958_4188(AE016958|pid:none) Mycobacterium avium subsp. para...    89   2e-16
AL583923_183(AL583923|pid:none) Mycobacterium leprae strain TN c...    88   4e-16
CP000656_4996(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c...    87   7e-16
CP000480_1435(CP000480|pid:none) Mycobacterium smegmatis str. MC...    87   1e-15
CP000088_577(CP000088|pid:none) Thermobifida fusca YX, complete ...    87   1e-15
CT573213_6085(CT573213|pid:none) Frankia alni str. ACN14A chromo...    86   2e-15

 psg: 0.68  gvh: 0.25  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall

>> prediction for CHR842 is nuc

>CHR842F.Seq
ATTAAAAAATCCAAATAAACATAAACATAAATATAATAAACATAAAAAATGAGTAAAATC
ATTCACAATTTACAAAACATAGAGTTAGACTCATTAAAAAAACTTGGAGAAGTTACCAAA
TATTTAAATGAACATCCAATGCTTAGATCATTNTTAATTTCCACTGGNCTCATTGGAACC
CTCNAAATTAATTAAATTAATCAAAAATAGAATTAGANATAATACAATTTTAGAAATTGA
TTTNACAAATACAATTGATACATNCTGATGTTGATATTAGTCCAATTGAAAAAATTACTT
GATCCAAATATTATTTCATTTAGATCACTTTTAGATGCAATNGAAAAAAGCAGCAAATGA
TAAGAGGGGTGATTGGTTTAATTGNNNNNNNNNN

>CHR842Z.Seq
NNNNNNNNNNTGCTAAATTCAATTTGAAAGGAATGTGGGAAGAGAAGGTTCATGTCAAAT
TTGATGCCCTCCATTTGAATCCAGATGGTGCCACTGACAATTCAACTTACTTCTCCTCAT
TACACAATTACACAGAAAAGCAATTGGCCGAGGTCAATAGTTATATGGATTTCATTTATG
AAGATTTCACTAGTAAAGTTAGTAAAGGTCGTAGATTAACTCGTGATCAAGTTGAAGAGA
TTGCTCGTGGTCGTGTTTGGACTGGTGCTCAAGCATTAAAACTCTCACTCGTTGATAAAT
TGGGTGGCTTGAAAGAGGCAATTGAAGTTGCCAAAGAATTGGTTGGTATCGCATCAAATG
TTCAACCACATGTTGTCACCTATCCAAAGGAAACAGTTTTATCACAATTGGTTGCCTCTA
GTGCAAACAATTCTCAAGACCTTGAAAGACGTGGCACTCCAGCTCAAGCTTCAATCACTC
ATTCTGTTGGTGTTTCAACATCAATCTTTACCAAATTTTCAACACTTACAAAATTAATTC
TTTTACCAAATAATTCAATCTCTTCAATTGCAAATACTTTAATTAATAATCAAAAAAATA
GTAATATCTTATCAATGAATCAATCTTCATTAATTTCTTCATCTTTTTAAAATTTTTTTA
AAATAAAAATTTAAATAAAATTTAAAATAAATTATAAG

>CHR842P.Seq
ATTAAAAAATCCAAATAAACATAAACATAAATATAATAAACATAAAAAATGAGTAAAATC
ATTCACAATTTACAAAACATAGAGTTAGACTCATTAAAAAAACTTGGAGAAGTTACCAAA
TATTTAAATGAACATCCAATGCTTAGATCATTNTTAATTTCCACTGGNCTCATTGGAACC
CTCNAAATTAATTAAATTAATCAAAAATAGAATTAGANATAATACAATTTTAGAAATTGA
TTTNACAAATACAATTGATACATNCTGATGTTGATATTAGTCCAATTGAAAAAATTACTT
GATCCAAATATTATTTCATTTAGATCACTTTTAGATGCAATNGAAAAAAGCAGCAAATGA
TAAGAGGGGTGATTGGTTTAATTG----------TGCTAAATTCAATTTGAAAGGAATGT
GGGAAGAGAAGGTTCATGTCAAATTTGATGCCCTCCATTTGAATCCAGATGGTGCCACTG
ACAATTCAACTTACTTCTCCTCATTACACAATTACACAGAAAAGCAATTGGCCGAGGTCA
ATAGTTATATGGATTTCATTTATGAAGATTTCACTAGTAAAGTTAGTAAAGGTCGTAGAT
TAACTCGTGATCAAGTTGAAGAGATTGCTCGTGGTCGTGTTTGGACTGGTGCTCAAGCAT
TAAAACTCTCACTCGTTGATAAATTGGGTGGCTTGAAAGAGGCAATTGAAGTTGCCAAAG
AATTGGTTGGTATCGCATCAAATGTTCAACCACATGTTGTCACCTATCCAAAGGAAACAG
TTTTATCACAATTGGTTGCCTCTAGTGCAAACAATTCTCAAGACCTTGAAAGACGTGGCA
CTCCAGCTCAAGCTTCAATCACTCATTCTGTTGGTGTTTCAACATCAATCTTTACCAAAT
TTTCAACACTTACAAAATTAATTCTTTTACCAAATAATTCAATCTCTTCAATTGCAAATA
CTTTAATTAATAATCAAAAAAATAGTAATATCTTATCAATGAATCAATCTTCATTAATTT
CTTCATCTTTTTAAAATTTTTTTAAAATAAAAATTTAAATAAAATTTAAAATAAATTATA
AG