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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR829
Library CH
(Link to library)
Clone ID CHR829
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16419-1
Original site URL
Representative seq. ID CHR829P
(Link to Original site)
Representative DNA sequence 
>CHR829 (CHR829Q) /CSM/CH/CHR8-B/CHR829Q.Seq.d/
ATTATTNATTTTATTTTTAATNAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTA
AAAATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATA
TTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAANAATGT
CATAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGG
GCTTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCA
TCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAA
ATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAANATTAAANAATGTGCCTTATTA
GGTAAATCATGTAGTTTCCAAAANAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGT
GAATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGXXXXXXXXXXAGTTTG
TTNTTTAAGATGTCCNCCCAAATCATGAATGTAGATTTAATGACCAAGGGTCATCCAATG
CTGTGTAAAGGGTTCACCATGATAGATGTTCATTAAGATGTCCACATGGCCATGAATGTA
AAGTTGATCACAATGGTAAAGAATGTTGCGTCAGATCCCATAGACCACCACCACCAGAAG
TTTGTTCATTAAGATGCCCACCAAAACATGAATGTAAATTTGATGATCATGGTAAAAAAT
GTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTGGTAGAGGTTTTGAAT
GTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAAGACCACACCCACCAC
AACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATGTAAAGTTGATCAACATG
GAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCTTTAAGATGTCCAC
CAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGTGTTAAAGTTCACCACG
ATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGTTGATCAACATGGAAAAG
AATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCATTAAGATGTCCACCAAAAC
ATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAAGTAGAAATGATTGTT
TAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGTGCCATGAAAACTGTAC
CAATTGATAAAGAAAATTGTTGGAAAAAGT
sequence update 2002.10.25
Translated Amino Acid sequence 
iixfifnxfklkkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEEXC
HKSSECIVINYTPCCGEQKWACSKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIK
ITTPTEYSCSDAXIKXCALLGKSCSFQXNSCSNPTSCCPGESICEGLSSGSSTS---

---SLXFKMSXQIMNVDLMTKGHPMLCKGFTMIDVH*dvhmamnvklitmvknvasdpid
hhhqkfvh*dahqnmnvnlmimvknvv*rfivmkfvi*ivvevlnvkldmmvqnvvsvqk
dhthhnmknvirdahqamnvklinmeknvallpidhhqnal*dvhqdmnvesttlvknvv
lkfttinvh*dvhqamnvklinmeknvallpidhhqnah*dvhqnmnvesitlvknavlk
vemiv*lvkt*tvkekvyivp*klyqlikkivgks
Translated Amino Acid sequence (All Frames) 
Frame A:
iixfifnxfklkkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEEXC
HKSSECIVINYTPCCGEQKWACSKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIK
ITTPTEYSCSDAXIKXCALLGKSCSFQXNSCSNPTSCCPGESICEGLSSGSSTS---

---SLXFKMSXQIMNVDLMTKGHPMLCKGFTMIDVH*dvhmamnvklitmvknvasdpid
hhhqkfvh*dahqnmnvnlmimvknvv*rfivmkfvi*ivvevlnvkldmmvqnvvsvqk
dhthhnmknvirdahqamnvklinmeknvallpidhhqnal*dvhqdmnvesttlvknvv
lkfttinvh*dvhqamnvklinmeknvallpidhhqnah*dvhqnmnvesitlvknavlk
vemiv*lvkt*tvkekvyivp*klyqlikkivgks

Frame B:
lxilflxnsn*kknnn*ls*k*knnkgccf*kileyfl*yslyqnpmrrivikllmkxnv
inlrnvll*iihhvvvnknglalkvhlilvhmkivvieihpitkllkyqinasilmdllk
lqlqpsilvlmpxlxnvpy*vnhvvskxtlvqiqlpvaqvnqfvkv*alvvqhl---

---vcxlrcppks*m*i**prviqccvkgsp**mfikmstwp*m*s*sqw*rmlrqip*t
tttrslfikmptkt*m*i**sw*kmlckdsl**sl*frlw*rf*m*n*t*wfkmlcpfrk
ttpttt*km**emptrp*m*s*stwkrmlrccp*tttkmlfkmstkt*m*sqplw*rmlc
*sspr*mfiemstrp*m*s*stwkrmlrccp*tttkmlikmstkt*m*nqslw*rmlc*k
*k*lfnl*rpkl*kkrftlchenctn**rkllek

Frame C:
yxfyf*xiqikkktitn*vknkkiikdvvskkywsifydipcikilcdgl**ny**rxms
*ifgmycyklytmlw*tkmgll*ryi*ylyi*k*ll*kfiq*psc*sik*mlqs*wiy*n
ynsnrvflf*cqx*xmclir*im*fpkxllfksnfllpr*inl*rfklw*fniw---

---fvx*dvxpnhecrfndqgssnav*rvhhdrcslrcphgheckvdhngkeccvrshrp
pppevcslrcppkheckfddhgkkccvkihcdevcdldcgrgfeckirhdgskccvrser
phppqhekcnkrcppgheckvdqhgkeccvvahrpppkcslrcpprhecrvnhfgeeccv
kvhhdkcslrcppgheckvdqhgkeccvvahrpppkcslrcppkhecrinhfgeeccvks
rndcltcedlncerkglhcamktvpidkencwkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR829 (CHR829Q) /CSM/CH/CHR8-B/CHR829Q.Seq.d/                       2403   0.0
CHR601 (CHR601Q) /CSM/CH/CHR6-A/CHR601Q.Seq.d/                       1552   0.0
CHE896 (CHE896Q) /CSM/CH/CHE8-D/CHE896Q.Seq.d/                       1550   0.0
AHN238 (AHN238Q) /CSM/AH/AHN2-B/AHN238Q.Seq.d/                       1546   0.0
AHM859 (AHM859Q) /CSM/AH/AHM8-C/AHM859Q.Seq.d/                       1546   0.0
AHE263 (AHE263Q) /CSM/AH/AHE2-C/AHE263Q.Seq.d/                       1546   0.0
CHR406 (CHR406Q) /CSM/CH/CHR4-A/CHR406Q.Seq.d/                       1544   0.0
AHD145 (AHD145Q) /CSM/AH/AHD1-B/AHD145Q.Seq.d/                       1542   0.0
CHG345 (CHG345Q) /CSM/CH/CHG3-B/CHG345Q.Seq.d/                       1538   0.0
CHF268 (CHF268Q) /CSM/CH/CHF2-C/CHF268Q.Seq.d/                       1538   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.  1451   0.0    4
U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.  1451   0.0    4
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    66   2e-16  4
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    66   6e-16  4
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    66   9e-08  2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    48   5e-04  2
AC141955|AC141955.2 Rattus norvegicus clone CH230-418P10, WORKING DRAFT SEQUENCE, 29 unordered pieces.    48   0.20   3
AC162511|AC162511.3 Bos taurus clone CH240-113F1, *** SEQUENCING IN PROGRESS ***, 45 unordered pieces.    46   0.38   5
AC127160|AC127160.3 Rattus norvegicus clone CH230-460D14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   0.49   1
AL161543|AL161543.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 43.    42   1.1    5
dna update 2005.11.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   606   e-172
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   200   1e-49
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...   119   2e-25
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName...   102   4e-20
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    91   1e-16
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        85   5e-15
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    84   8e-15
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    71   7e-11
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    70   2e-10
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    70   2e-10
protein update 2009. 4.13
PSORT 

 psg: 1.02  gvh: 0.68  alm: 0.51  top: 0.27  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for CHR829 is exc
5' end seq. ID CHR829F
5' end seq. 
>CHR829F.Seq
ATTATTNATTTTATTTTTAATNAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTA
AAAATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATA
TTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAANAATGT
CATAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGG
GCTTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCA
TCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAA
ATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAANATTAAANAATGTGCCTTATTA
GGTAAATCATGTAGTTTCCAAAANAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGT
GAATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGNNNNNNNNNN
Length of 5' end seq. 534
3' end seq. ID CHR829Z
3' end seq. 
>CHR829Z.Seq
NNNNNNNNNNAGTTTGTTNTTTAAGATGTCCNCCCAAATCATGAATGTAGATTTAATGAC
CAAGGGTCATCCAATGCTGTGTAAAGGGTTCACCATGATAGATGTTCATTAAGATGTCCA
CATGGCCATGAATGTAAAGTTGATCACAATGGTAAAGAATGTTGCGTCAGATCCCATAGA
CCACCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAATGTAAATTTGAT
GATCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGT
GGTAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAA
AGACCACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATGT
AAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGC
TCTTTAAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGT
GTTAAAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGTT
GATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCATTA
AGATGTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAA
AGTAGAAATGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGT
GCCATGAAAACTGTACCAATTGATAAAGAAAATTGTTGGAAAAAGT
Length of 3' end seq. 826
Connected seq. ID CHR829P
Connected seq. 
>CHR829P.Seq
ATTATTNATTTTATTTTTAATNAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTA
AAAATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATA
TTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAANAATGT
CATAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGG
GCTTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCA
TCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAA
ATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAANATTAAANAATGTGCCTTATTA
GGTAAATCATGTAGTTTCCAAAANAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGT
GAATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGG----------AGTTTG
TTNTTTAAGATGTCCNCCCAAATCATGAATGTAGATTTAATGACCAAGGGTCATCCAATG
CTGTGTAAAGGGTTCACCATGATAGATGTTCATTAAGATGTCCACATGGCCATGAATGTA
AAGTTGATCACAATGGTAAAGAATGTTGCGTCAGATCCCATAGACCACCACCACCAGAAG
TTTGTTCATTAAGATGCCCACCAAAACATGAATGTAAATTTGATGATCATGGTAAAAAAT
GTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTGGTAGAGGTTTTGAAT
GTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAAGACCACACCCACCAC
AACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATGTAAAGTTGATCAACATG
GAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCTTTAAGATGTCCAC
CAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGTGTTAAAGTTCACCACG
ATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGTTGATCAACATGGAAAAG
AATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCATTAAGATGTCCACCAAAAC
ATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAAGTAGAAATGATTGTT
TAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGTGCCATGAAAACTGTAC
CAATTGATAAAGAAAATTGTTGGAAAAAGT
Length of connected seq. 1340
Full length Seq ID -
Full length Seq. -
Length of full length seq. -