>CHR827 (CHR827Q) /CSM/CH/CHR8-B/CHR827Q.Seq.d/
XXXXXXXXXXCTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTA
CCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAG
ATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAG
ATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAG
AAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAAC
AACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTA
AAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGA
ACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGG
CTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTC
CTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAAC
AAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAAT
AATTTAATCATTCTTTNCTTTTTAAAAAACT

---SHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQD
AAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLK
VIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSP
DQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhsxlfkk

Frame A:
---SHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQD
AAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLK
VIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSP
DQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhsxlfkk


Frame B:
---lirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkm
llnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlk
lsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnll
tklkin*kifnmnnksknnkin*ikkkinny*nknkiknnliilxflkn


Frame C:
---s*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trc
c*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*s
yqrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*efssrettis*
pn*ksikkyst*ttnprttr*iksrkkstiirtrtkskii*sffxf*kt

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        640   0.0
SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        640   0.0
SHL750 (SHL750Q) /CSM/SH/SHL7-C/SHL750Q.Seq.d/                        640   0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        640   0.0
SHL709 (SHL709Q) /CSM/SH/SHL7-A/SHL709Q.Seq.d/                        640   0.0
SHL610 (SHL610Q) /CSM/SH/SHL6-A/SHL610Q.Seq.d/                        640   0.0
SHL150 (SHL150Q) /CSM/SH/SHL1-C/SHL150Q.Seq.d/                        640   0.0
SHL145 (SHL145Q) /CSM/SH/SHL1-B/SHL145Q.Seq.d/                        640   0.0
SHK885 (SHK885Q) /CSM/SH/SHK8-D/SHK885Q.Seq.d/                        640   0.0
SHK614 (SHK614Q) /CSM/SH/SHK6-A/SHK614Q.Seq.d/                        640   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   553   0.0    3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   3e-25  1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   3e-05  9
CR962128|CR962128.1 Medicago truncatula chromosome 5 clone mth2-2o11, WORKING DRAFT SEQUENCE, 3 ordered pieces.    34   0.001  7
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.001  8
BH133394|BH133394.1 ENTNI62TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38   0.012  2
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   0.020  10
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    36   0.022  11
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   0.022  13
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   0.059  10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   225   8e-58
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   1.6
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   2.7
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   6.0
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    33   7.8
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    33   7.8
AY059831_1(AY059831|pid:none) Arabidopsis thaliana Unknown prote...    33   7.8

 psg: 0.81  gvh: 0.16  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for CHR827 is nuc

>CHR827Z.Seq
NNNNNNNNNNCTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTA
CCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAG
ATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAG
ATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAG
AAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAAC
AACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTA
AAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGA
ACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGG
CTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTC
CTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAAC
AAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAAT
AATTTAATCATTCTTTNCTTTTTAAAAAACT