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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR818
Library CH
(Link to library)
Clone ID CHR818
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15685-1
Original site URL
Representative seq. ID CHR818P
(Link to Original site)
Representative DNA sequence 
>CHR818 (CHR818Q) /CSM/CH/CHR8-A/CHR818Q.Seq.d/
ATATAACACACAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAA
TATATATATAATAAACACTCTATCATTTAATTTTAATAAAAAAAAAAXXXXXXXXXXCTT
GATCATCTTAAAATGGGTCGTTCCATATCGTTCATTTGAGGTTGACAAAGTTGATCCACC
ATTCATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGTGGTACACCAGATGTTGT
CTTCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGGCTCTCATTTCCAT
TCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGA
AAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCA
TCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGA
GTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATT
GGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACG
TGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGT
ACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGACTTCATTGGGTAGA
ATTCCAAAATAAATTCTATATTGGTGATGGTGTTAGATTCATTCCATACAGTGCCACTCG
TATTCTTTCAGGNTCTGAAGATGATGAATANATCATTTAACTAACNAACATAAATAAATA
AATAAATAAATAAATNAAATAAAATAAAATAAAATACA
sequence update 2002.10.25
Translated Amino Acid sequence 
yntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---LIILKWVVPYRSFEVDKVDPPFILPTIIAMFLSPGGTPDVVFFSGQGAVQTALLFLA
LISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFVHQVI
HTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGAWLGA
SVAVLLLMESLSAFLHALRLHWVEFQNKFYIGDGVRFIPYSATRILSGSEDDEXII*ltn
ink*ink*xk*nkiky
Translated Amino Acid sequence (All Frames) 
Frame A:
i*htkkfishycfsliykq*yiynkhsii*f**kk---

---ldhlkmgrsisfi*g*qs*stihssnhyryvlvtrwytrcclllwsrccsnrslilg
shfhssyvgh*tivheeiplprsrkkeirsprrgt***sslhwssr*ri*ng*slcsssh
syhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrtw*silgfrwfwclvrc
lccctftygipfcflars*tslgripk*ilyw*wc*ihsiqchsysfrx*r**ixhltnx
hk*ink*inxik*nki

Frame B:
yntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---LIILKWVVPYRSFEVDKVDPPFILPTIIAMFLSPGGTPDVVFFSGQGAVQTALLFLA
LISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFVHQVI
HTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGAWLGA
SVAVLLLMESLSAFLHALRLHWVEFQNKFYIGDGVRFIPYSATRILSGSEDDEXII*ltn
ink*ink*xk*nkiky

Frame C:
ithkkihitllffinl*tiiyi**tlyhlilikkk---

---*ss*ngsfhivhlrltklihhsffqplslcschqvvhqmlssslvkvlfkplsyswl
sfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklstlvitvknlkwvkslfiksf
ipsslfwvlfqilplifvyglfhwltlsyllyfgnvfslvksnvvihswlslvlvlg*vp
lllyfylwnpfllsctlldfig*nskinsilvmvldsfhtvplvffqxlkmmnxsfn*xt
*ink*inkxnkik*nt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR818 (CHR818Q) /CSM/CH/CHR8-A/CHR818Q.Seq.d/                       1394   0.0
CHF322 (CHF322Q) /CSM/CH/CHF3-A/CHF322Q.Seq.d/                       1386   0.0
CHH295 (CHH295Q) /CSM/CH/CHH2-D/CHH295Q.Seq.d/                       1368   0.0
CHO859 (CHO859Q) /CSM/CH/CHO8-C/CHO859Q.Seq.d/                       1340   0.0
CHR349 (CHR349Q) /CSM/CH/CHR3-C/CHR349Q.Seq.d/                       1336   0.0
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                       1332   0.0
AHO215 (AHO215Q) /CSM/AH/AHO2-A/AHO215Q.Seq.d/                       1332   0.0
CHL154 (CHL154Q) /CSM/CH/CHL1-C/CHL154Q.Seq.d/                       1324   0.0
SHJ838 (SHJ838Q) /CSM/SH/SHJ8-B/SHJ838Q.Seq.d/                       1318   0.0
SHJ790 (SHJ790Q) /CSM/SH/SHJ7-D/SHJ790Q.Seq.d/                       1318   0.0
own update 2002.11.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.  1332   0.0    2
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    72   2e-13  2
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGJ1L02, mRNA sequence.    80   9e-11  1
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   9e-11  1
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGJ1L02, mRNA sequence.    80   9e-11  1
AC137668|AC137668.18 Medicago truncatula clone mth2-5f8, complete sequence.    52   5e-09  4
CV164410|CV164410.1 rsmsxl_003361.y1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   7e-09  3
CV172465|CV172465.1 rsmsxlre_008717.z1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   1e-08  3
DT466948|DT466948.1 GH_CHX19K13.f GH_CHX Gossypium hirsutum cDNA clone GH_CHX19K13 5', mRNA sequence.    72   2e-08  1
DT457612|DT457612.1 GH_ON34M24.r GH_ON Gossypium hirsutum cDNA clone GH_ON34M24 3', mRNA sequence.    72   2e-08  1
dna update 2005.11.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   455   e-126
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   455   e-126
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   210   5e-53
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   208   2e-52
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   205   2e-51
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   204   3e-51
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   204   3e-51
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   203   5e-51
CR954208_391(CR954208|pid:none) Ostreococcus tauri strain OTTH05...   201   3e-50
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...   200   6e-50
protein update 2009. 4.13
PSORT 

 psg: 0.85  gvh: 0.49  alm: 0.18  top: 0.77  tms: 0.20  mit: 0.35  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: vacuolar
	 12.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for CHR818 is end
5' end seq. ID CHR818F
5' end seq. 
>CHR818F.Seq
ATATAACACACAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAA
TATATATATAATAAACACTCTATCATTTAATTTTAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 117
3' end seq. ID CHR818Z
3' end seq. 
>CHR818Z.Seq
NNNNNNNNNNCTTGATCATCTTAAAATGGGTCGTTCCATATCGTTCATTTGAGGTTGACA
AAGTTGATCCACCATTCATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGTGGTA
CACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGG
CTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACT
TCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTC
TCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCA
TTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTAT
GGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTG
GTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTG
CCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGAC
TTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGGTGTTAGATTCATTCCAT
ACAGTGCCACTCGTATTCTTTCAGGNTCTGAAGATGATGAATANATCATTTAACTAACNA
ACATAAATAAATAAATAAATAAATAAATNAAATAAAATAAAATAAAATACA
Length of 3' end seq. 771
Connected seq. ID CHR818P
Connected seq. 
>CHR818P.Seq
ATATAACACACAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAA
TATATATATAATAAACACTCTATCATTTAATTTTAATAAAAAAAAAA----------CTT
GATCATCTTAAAATGGGTCGTTCCATATCGTTCATTTGAGGTTGACAAAGTTGATCCACC
ATTCATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGTGGTACACCAGATGTTGT
CTTCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGGCTCTCATTTCCAT
TCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGA
AAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCA
TCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGA
GTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATT
GGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACG
TGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGT
ACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGACTTCATTGGGTAGA
ATTCCAAAATAAATTCTATATTGGTGATGGTGTTAGATTCATTCCATACAGTGCCACTCG
TATTCTTTCAGGNTCTGAAGATGATGAATANATCATTTAACTAACNAACATAAATAAATA
AATAAATAAATAAATNAAATAAAATAAAATAAAATACA
Length of connected seq. 868
Full length Seq ID -
Full length Seq. -
Length of full length seq. -