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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR810
Library CH
(Link to library)
Clone ID CHR810
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12208-1
Original site URL
Representative seq. ID CHR810E
(Link to Original site)
Representative DNA sequence 
>CHR810 (CHR810Q) /CSM/CH/CHR8-A/CHR810Q.Seq.d/
TTTCTTTAATACTATTTATTTTAAAATATTCCTATTTAAAAAAAATGAAATTATTATATT
CATTAGTTGCATTATTAGGTGTTTCATCAGTTGCATTTGGTGATAATAGTTGTAATCAAT
TACTTTCATCATTAGCTGATCCATCAAAATGTGTTCAAGTTTCAATCTCTGGTGTTCATT
CTCAATCATTGGCTCAAGAAGGTTATAAAGGTAATCTTGTTTTCGCATCCGGTGAATTTG
TATTAAGGGAATCATTATACAATTTACAAACCTATGAAACAACTTGTAGTCGTGGCGGAT
TAGTTCAACCATTTGCAGCTGATGATCAATTCCGTGTTGAAGATTTTAGTATTAGATTAA
GTGATGGTAATCTTAGATTAAAACAAATAAATACTCAGCTTACTTGTAATGGTAATGNTG
GTTTCTTTAATTTAAATAACTTTTATTATGCATTGGCATTAAAATCATATGACACATGTC
CAAGACTTTACTATGGTGAACCTTGTNATACACCAACAGTTACACCAACAACAACACCAT
CACCAACAACCAAACCACCAANTGGACCATTAAAATTTAATTATNAATTAGATATTGATT
GGCAATGGGATTCAAATAATGTACNCTATTATCAATATAGAGTTNCAGTAACAAATAATG
ATAGCACAGCAATTAAATCAATTCAAATTCACTTTGATAATTGGAATCCAANTGAATTTT
GGAATGNTGAAAAAAATGCTCAAACTGGTAATTTAGGTTTCCCATCATTTGTAAATACTT
TTCCAGTTGGTGACTNTTTNTCATTTGGNTTCGTTTCAGCAGTTGTAAATCCAANTTTNT
CAACAGTTTCATTTGAAAGAGTTTAAAAAACNCNCACCCNAACAAAAAAAAAATA
sequence update 2002.10.27
Translated Amino Acid sequence 
SLILFILKYSYLKKMKLLYSLVALLGVSSVAFGDNSCNQLLSSLADPSKCVQVSISGVHS
QSLAQEGYKGNLVFASGEFVLRESLYNLQTYETTCSRGGLVQPFAADDQFRVEDFSIRLS
DGNLRLKQINTQLTCNGNXGFFNLNNFYYALALKSYDTCPRLYYGEPCXTPTVTPTTTPS
PTTKPPXGPLKFNYXLDIDWQWDSNNVXYYQYRVXVTNNDSTAIKSIQIHFDNWNPXEFW
NXEKNAQTGNLGFPSFVNTFPVGDXXSFGFVSAVVNPXXSTVSFERV*ktxtxtkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
fl*yylf*nipi*kk*nyyih*lhy*vfhqlhlviivvinyfhh*lihqnvfkfqslvfi
lnhwlkkvikvilfshpvnly*gnhytiykpmkqlvvvad*fnhlqlminsvlkilvld*
vmvild*nk*ilsllvmvmxvsli*itfimhwh*nhmthvqdftmvnlvihqqlhqqqhh
hqqpnhqxdh*nlixn*iligngiqimyxiiniexq*qimiaqqlnqfkftliigiqxnf
gmxkkmlklvi*vshhl*ilfqlvtxxhlxsfqql*iqxxqqfhlkefkkxxpxqkkn


Frame B:
ffntiyfkiflfkkneiiifisciircfisciw***l*sitfiis*sikmcssfnlwcsf
siigsrrl*r*scfrir*icikgiiiqftnl*nnl*swrisstics**sipc*rf*y*ik
*w*s*iktnkysayl*w*xwfl*fk*lllcigikii*hmsktllw*tlxytnsytnnnti
tnnqttxwtiki*lxiry*lamgfk*ctllsi*sxsnk***hsn*insnsl**lesx*il
ex*kkcsnw*frfpiickyfssw*lfxiwxrfsscksxfxnsfi*kslknxhpnkkki


Frame C:
SLILFILKYSYLKKMKLLYSLVALLGVSSVAFGDNSCNQLLSSLADPSKCVQVSISGVHS
QSLAQEGYKGNLVFASGEFVLRESLYNLQTYETTCSRGGLVQPFAADDQFRVEDFSIRLS
DGNLRLKQINTQLTCNGNXGFFNLNNFYYALALKSYDTCPRLYYGEPCXTPTVTPTTTPS
PTTKPPXGPLKFNYXLDIDWQWDSNNVXYYQYRVXVTNNDSTAIKSIQIHFDNWNPXEFW
NXEKNAQTGNLGFPSFVNTFPVGDXXSFGFVSAVVNPXXSTVSFERV*ktxtxtkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR810 (CHR810Q) /CSM/CH/CHR8-A/CHR810Q.Seq.d/                        950   0.0
SSI288 (SSI288Q) /CSM/SS/SSI2-D/SSI288Q.Seq.d/                        942   0.0
SSG278 (SSG278Q) /CSM/SS/SSG2-D/SSG278Q.Seq.d/                        942   0.0
SLB247 (SLB247Q) /CSM/SL/SLB2-B/SLB247Q.Seq.d/                        942   0.0
SSJ508 (SSJ508Q) /CSM/SS/SSJ5-A/SSJ508Q.Seq.d/                        846   0.0
SSF389 (SSF389Q) /CSM/SS/SSF3-D/SSF389Q.Seq.d/                        846   0.0
SSF312 (SSF312Q) /CSM/SS/SSF3-A/SSF312Q.Seq.d/                        846   0.0
SSJ626 (SSJ626Q) /CSM/SS/SSJ6-B/SSJ626Q.Seq.d/                        799   0.0
SSF514 (SSF514Q) /CSM/SS/SSF5-A/SSF514Q.Seq.d/                        710   0.0
SFI352 (SFI352Q) /CSM/SF/SFI3-C/SFI352Q.Seq.d/                        640   0.0
own update 2002.11.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC026192|AC026192.2 Homo sapiens chromosome 3 clone RP11-388I23 map 3p, WORKING DRAFTSEQUENCE, 10 unordered pieces.    48   0.32   1
AC139139|AC139139.1 Homo sapiens chromosome 17 clone XXfos-82642E10 map 17, WORKING DRAFT SEQUENCE, 5 unordered pieces.    48   0.32   1
AC140226|AC140226.6 Mus musculus BAC clone RP24-487E24 from 3, complete sequence.    48   0.32   1
AC117606|AC117606.8 Mus musculus chromosome 3, clone RP23-78O15, complete sequence.    48   0.32   1
AC078850|AC078850.5 Homo sapiens BAC clone RP11-184M15 from 4, complete sequence.    48   0.32   1
AX344555|AX344555.1 Sequence 6 from Patent WO0200932.              34   0.60   10
AC134031|AC134031.2 Rattus norvegicus clone CH230-25M14, WORKING DRAFT SEQUENCE, 2 unordered pieces.    46   1.3    1
AC130574|AC130574.4 Rattus norvegicus clone CH230-274C16, WORKING DRAFT SEQUENCE, 2 unordered pieces.    46   1.3    1
AC106256|AC106256.6 Rattus norvegicus clone CH230-217D14, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    46   1.3    1
AC163161|AC163161.4 Mus musculus BAC clone RP23-103A23 from chromosome 6, complete sequence.    46   1.3    1
dna update 2005.11.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382128_428(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    35   3.2
(Q8M355) RecName: Full=Ribosomal protein VAR1, mitochondrial;  &...    33   9.4
protein update 2009. 4.13
PSORT 

 psg: 0.54  gvh: 0.84  alm: 0.29  top: 0.13  tms: 0.07  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.59  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: Golgi
	 12.0 %: mitochondrial
	 12.0 %: endoplasmic reticulum
	  8.0 %: peroxisomal
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHR810 is cyt
5' end seq. ID CHR810F
5' end seq. 
>CHR810F.Seq
TTTCTTTAATACTATTTATTTTAAAATATTCCTATTTAAAAAAAATGAAATTATTATATT
CATTAGTTGCATTATTAGGTGTTTCATCAGTTGCATTTGGTGATAATAGTTGTAATCAAT
TACTTTCATCATTAGCTGATCCATCAAAATGTGTTCAAGTTTCAATCTCTGGTGTTCATT
CTCAATCATTGGCTCAAGAAGGTTATAAAGGTAATCTTGTTTTCGCATCCGGTGAATTTG
TATTAAGGGAATCATTATACAATTTACAAACCTATGAAACAACTTGTAGTCGTGGCGGAT
TAGTTCAACCATTTGCAGCTGATGATCAATTCCGTGTTGAAGATTTTAGTATTAGATTAA
GTGATGGTAATCTTAGATTAAAACAAATAAATACTCAGCTTACTTGTAATGGTAATGTTG
GTTTCTTTAATTTAAATAACTTTTATTATGCATTGGCATTAAAATCATATGACACATGTC
CAAGACTTTACTATGGTGAACCTTGTAATACACCAACAGTTACACCAACAACAACACCAT
CACCAACAACCAAACCACCAACTGGACCATTAAAATTTAATTATNNNNNNNNNN
Length of 5' end seq. 594
3' end seq. ID CHR810Z
3' end seq. 
>CHR810Z.Seq
NNNNNNNNNNTACAAACCTATGNAACAACTTGTAGTCGTGGCGGATTAGTTCAACCATTT
GCAGCTGATGATCAATTCCGTGTTGAAGATTTTAGTATTAGATTAAGTGATGGTAATCTT
AGATTAAAACAAATAAATACTCAGCTTACTTGTAATGGTAATGGTGGTTTCTTTAATTTA
AATAACTTTTATTATGCATTGGCATTAAAATCATATGACACATGTCCAAGACTTTACTAT
GGTGAACCTTGTGATACNCCAACAGTTACACCAACANCAACACCATCACCAACANCCAAA
CCACCAAGTGGACCATTAAAATTTAATTATNAATTAGATATTGATTGGCAATGGGATTCA
AATAATGTACNCTATTATCAATATAGAGTTNCAGTAACAAATAATGATAGCACAGCAATT
AAATCAATTCAAATTCACTTTGATAATTGGAATCCAANTGAATTTTGGAATGNTGAAAAA
AATGCTCAAACTGGTAATTTAGGTTTCCCATCATTTGTAAATACTTTTCCAGTTGGTGAC
TNTTTNTCATTTGGNTTCGTTTCAGCAGTTGTAAATCCAANTTTNTCAACAGTTTCATTT
GAAAGAGTTTAAAAAACNCNCACCCNAACAAAAAAAAAATA
Length of 3' end seq. 641
Connected seq. ID CHR810P
Connected seq. 
>CHR810P.Seq
TTTCTTTAATACTATTTATTTTAAAATATTCCTATTTAAAAAAAATGAAATTATTATATT
CATTAGTTGCATTATTAGGTGTTTCATCAGTTGCATTTGGTGATAATAGTTGTAATCAAT
TACTTTCATCATTAGCTGATCCATCAAAATGTGTTCAAGTTTCAATCTCTGGTGTTCATT
CTCAATCATTGGCTCAAGAAGGTTATAAAGGTAATCTTGTTTTCGCATCCGGTGAATTTG
TATTAAGGGAATCATTATACAATTTACAAACCTATGAAACAACTTGTAGTCGTGGCGGAT
TAGTTCAACCATTTGCAGCTGATGATCAATTCCGTGTTGAAGATTTTAGTATTAGATTAA
GTGATGGTAATCTTAGATTAAAACAAATAAATACTCAGCTTACTTGTAATGGTAATGTTG
GTTTCTTTAATTTAAATAACTTTTATTATGCATTGGCATTAAAATCATATGACACATGTC
CAAGACTTTACTATGGTGAACCTTGTAATACACCAACAGTTACACCAACAACAACACCAT
CACCAACAACCAAACCACCAACTGGACCATTAAAATTTAATTAT----------TACAAA
CCTATGNAACAACTTGTAGTCGTGGCGGATTAGTTCAACCATTTGCAGCTGATGATCAAT
TCCGTGTTGAAGATTTTAGTATTAGATTAAGTGATGGTAATCTTAGATTAAAACAAATAA
ATACTCAGCTTACTTGTAATGGTAATGGTGGTTTCTTTAATTTAAATAACTTTTATTATG
CATTGGCATTAAAATCATATGACACATGTCCAAGACTTTACTATGGTGAACCTTGTGATA
CNCCAACAGTTACACCAACANCAACACCATCACCAACANCCAAACCACCAAGTGGACCAT
TAAAATTTAATTATNAATTAGATATTGATTGGCAATGGGATTCAAATAATGTACNCTATT
ATCAATATAGAGTTNCAGTAACAAATAATGATAGCACAGCAATTAAATCAATTCAAATTC
ACTTTGATAATTGGAATCCAANTGAATTTTGGAATGNTGAAAAAAATGCTCAAACTGGTA
ATTTAGGTTTCCCATCATTTGTAAATACTTTTCCAGTTGGTGACTNTTTNTCATTTGGNT
TCGTTTCAGCAGTTGTAAATCCAANTTTNTCAACAGTTTCATTTGAAAGAGTTTAAAAAA
CNCNCACCCNAACAAAAAAAAAATA
Length of connected seq. 1215
Full length Seq ID CHR810E
Full length Seq. 
>CHR810E.Seq
TTTCTTTAATACTATTTATTTTAAAATATTCCTATTTAAAAAAAATGAAATTATTATATT
CATTAGTTGCATTATTAGGTGTTTCATCAGTTGCATTTGGTGATAATAGTTGTAATCAAT
TACTTTCATCATTAGCTGATCCATCAAAATGTGTTCAAGTTTCAATCTCTGGTGTTCATT
CTCAATCATTGGCTCAAGAAGGTTATAAAGGTAATCTTGTTTTCGCATCCGGTGAATTTG
TATTAAGGGAATCATTATACAATTTACAAACCTATGAAACAACTTGTAGTCGTGGCGGAT
TAGTTCAACCATTTGCAGCTGATGATCAATTCCGTGTTGAAGATTTTAGTATTAGATTAA
GTGATGGTAATCTTAGATTAAAACAAATAAATACTCAGCTTACTTGTAATGGTAATGNTG
GTTTCTTTAATTTAAATAACTTTTATTATGCATTGGCATTAAAATCATATGACACATGTC
CAAGACTTTACTATGGTGAACCTTGTNATACACCAACAGTTACACCAACAACAACACCAT
CACCAACAACCAAACCACCAANTGGACCATTAAAATTTAATTATNAATTAGATATTGATT
GGCAATGGGATTCAAATAATGTACNCTATTATCAATATAGAGTTNCAGTAACAAATAATG
ATAGCACAGCAATTAAATCAATTCAAATTCACTTTGATAATTGGAATCCAANTGAATTTT
GGAATGNTGAAAAAAATGCTCAAACTGGTAATTTAGGTTTCCCATCATTTGTAAATACTT
TTCCAGTTGGTGACTNTTTNTCATTTGGNTTCGTTTCAGCAGTTGTAAATCCAANTTTNT
CAACAGTTTCATTTGAAAGAGTTTAAAAAACNCNCACCCNAACAAAAAAAAAATA
Length of full length seq. 895