>CHR806 (CHR806Q) /CSM/CH/CHR8-A/CHR806Q.Seq.d/
XXXXXXXXXXAACCACAAAAAGTTTCAAATAAACACCAACTTCAAGAACAACAAATTAAT
TCACCNGAGGATATTCAATATCAATTAAATCATTTAAATCAACCATTCCAAGATGACTAT
CATAATGATCAAACTGAAGAATTAAAAGATGATGATTATAATTTTAATGATCAACAAATT
ANCAATGGTCAATTTGAAAATAATGTTGAAGAATTTCCTGATTTAAATGATGCTAATGAT
AATTTTGAACAAGTTANCAACAACAACAACAACATCAATAATAATAACAATANCNNCTTT
AAAGTTGATAAATCAAAGAAAAGTGCTCAACAAGTTGTNAATTGCTTTAGAGAATGAAAG
ACTTTATCTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGANTATTCATAATT
CCAATTTGAATAAAGCAGTTCAAGAGGNTGAAGAAATTGAAAGACAACAAAATGGTAATG
GTTCACCTGCTGTAAACTNTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATG
AAATTACCAATGANCACAGATGCCATTGAACAAGCTCAACATTNACAACGTATTGAAAAT
GGTGAAGATATCGATGAGTA

---PQKVSNKHQLQEQQINSPEDIQYQLNHLNQPFQDDYHNDQTEELKDDDYNFNDQQIX
NGQFENNVEEFPDLNDANDNFEQVXNNNNNINNNNNXXFKVDKSKKSAQQVVNCFRE*kt
lssrs*rcsreti*rxfiipi*ikqfkrxkklkdnkmvmvhll*txirl*lkwemlkimk
lpmxtdaieqaqhxqriengedide

Frame A:
---ttksfk*tptsrttn*ftxgysisiksfkstipr*ls**sn*rikr**l*f**stnx
qwsi*k*c*ris*fk*c***f*tsxqqqqqhq***qxxl*s**ikekcstscxll*rmkd
fifkklkmlqrdymkxihnsnlnkavqexeeierqqngngspavnxhkivtqmgnvenne
itnxhrch*tsstxtty*kw*ryr*v


Frame B:
---PQKVSNKHQLQEQQINSPEDIQYQLNHLNQPFQDDYHNDQTEELKDDDYNFNDQQIX
NGQFENNVEEFPDLNDANDNFEQVXNNNNNINNNNNXXFKVDKSKKSAQQVVNCFRE*kt
lssrs*rcsreti*rxfiipi*ikqfkrxkklkdnkmvmvhll*txirl*lkwemlkimk
lpmxtdaieqaqhxqriengedide


Frame C:
---hkkfqintnfknnklihxrifnin*ii*inhskmtiimiklkn*kmmiiilminklx
mvnlkimlknfli*mmlmiilnklxtttttsiiitixxlklinqrkvlnklxialenerl
ylqevedaperlyexys*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**n
yq*xqmplnklnixnvlkmvkisms

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR806 (CHR806Q) /CSM/CH/CHR8-A/CHR806Q.Seq.d/                        632   e-180
SHL868 (SHL868Q) /CSM/SH/SHL8-C/SHL868Q.Seq.d/                        585   e-166
SHG106 (SHG106Q) /CSM/SH/SHG1-A/SHG106Q.Seq.d/                        585   e-166
SFJ814 (SFJ814Q) /CSM/SF/SFJ8-A/SFJ814Q.Seq.d/                        585   e-166
SFG212 (SFG212Q) /CSM/SF/SFG2-A/SFG212Q.Seq.d/                        585   e-166
SFF541 (SFF541Q) /CSM/SF/SFF5-B/SFF541Q.Seq.d/                        585   e-166
SFC806 (SFC806Q) /CSM/SF/SFC8-A/SFC806Q.Seq.d/                        585   e-166
SFA738 (SFA738Q) /CSM/SF/SFA7-B/SFA738Q.Seq.d/                        585   e-166
CHR131 (CHR131Q) /CSM/CH/CHR1-B/CHR131Q.Seq.d/                        585   e-166
CHQ337 (CHQ337Q) /CSM/CH/CHQ3-B/CHQ337Q.Seq.d/                        585   e-166

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   466   0.0    5
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   0.001  12
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   0.008  11
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    36   0.008  9
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    36   0.017  9
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    36   0.025  8
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    34   0.035  10
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        38   0.036  14
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    38   0.068  6
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    36   0.092  10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   189   4e-47
(Q9TX44) Protein twist.                                                40   0.052
AY190956_2(AY190956|pid:none) Drosophila virilis clone DVIF01_06...    40   0.052
AE001362_113(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.33
AL844504_150(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.57
AL031745_47(AL031745|pid:none) Plasmodium falciparum DNA from MA...    36   0.74
(Q8ILR9) RecName: Full=LRR domain-containing protein PF14_0175; ...    36   0.74
AC115599_19(AC115599|pid:none) Dictyostelium discoideum chromoso...    36   0.74
AL844509_254(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    36   0.97
(Q5UQT2) RecName: Full=Uncharacterized protein R335;  &AY653733_...    36   0.97

 psg: 0.53  gvh: 0.14  alm: 0.68  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 16.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHR806 is nuc

>CHR806Z.Seq
NNNNNNNNNNAACCACAAAAAGTTTCAAATAAACACCAACTTCAAGAACAACAAATTAAT
TCACCNGAGGATATTCAATATCAATTAAATCATTTAAATCAACCATTCCAAGATGACTAT
CATAATGATCAAACTGAAGAATTAAAAGATGATGATTATAATTTTAATGATCAACAAATT
ANCAATGGTCAATTTGAAAATAATGTTGAAGAATTTCCTGATTTAAATGATGCTAATGAT
AATTTTGAACAAGTTANCAACAACAACAACAACATCAATAATAATAACAATANCNNCTTT
AAAGTTGATAAATCAAAGAAAAGTGCTCAACAAGTTGTNAATTGCTTTAGAGAATGAAAG
ACTTTATCTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGANTATTCATAATT
CCAATTTGAATAAAGCAGTTCAAGAGGNTGAAGAAATTGAAAGACAACAAAATGGTAATG
GTTCACCTGCTGTAAACTNTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATG
AAATTACCAATGANCACAGATGCCATTGAACAAGCTCAACATTNACAACGTATTGAAAAT
GGTGAAGATATCGATGAGTA