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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR794
Library CH
(Link to library)
Clone ID CHR794
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHR794P
(Link to Original site)
Representative DNA sequence 
>CHR794 (CHR794Q) /CSM/CH/CHR7-D/CHR794Q.Seq.d/
AAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAA
AAATACTTCTTTTTCTTTTTTTGAAATTGGTATAATTAAAAATGTATAGTAAAAAATATA
CATCCTTTGTAATAGTATTGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAA
TTTCTGAANATGNGGGTAAAGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTG
AANATGTAGTTGTNCAATTTGANAATGTTGCAAATCAAGTTATTGAANAATTAAAAGTTG
AACATCAAAGACAAGAATTATTAGGNGAAGTAAAACATGATTCATTAANANACTCTGCAA
CAAATTACATTTGGGGATTACTTGATAAAATTCAAAGTTNTTTACCAAAAGACAACAATA
AAGTTTCAAAAGTTGAANAAGCATTTTCAAGNGGCCAAAATAATAATATCGGTANCAGTA
TTGGNGATTCAACTXXXXXXXXXXCCAGAGAGACTATATGAAGAAATTCATAATTCCAAT
TTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCA
CCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATT
ACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAA
GATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAA
GATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAA
GAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAA
CAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTT
AAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAG
AACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTG
GCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCT
CCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAA
CAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAA
TAATTTAATCATTCTTTNCTTTTTAAAAAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
slnnrnnkn*y*kkgtlkkkillflflklv*LKMYSKKYTSFVIVLILSCIISTCXSNQI
SEXXGKAINQKLNENIEKVEXVVVQFXNVANQVIEXLKVEHQRQELLGEVKHDSLXXSAT
NYIWGLLDKIQSXLPKDNNKVSKVEXAFSXGQNNNIGXSIGDST---

---PERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLN
QEKNQQLLEQEQNQK*fnhsxlfkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kv*iieiikinikkker*kkkyfffff*nwyn*kcivknihpl**y*fyhvsfqhvhlik
flxmxvkqlikn*mkilkklxm*lxnlxmlqikllxn*klnikdkny*xk*nmih*xtlq
qitfgdylikfkvxyqkttikfqklxkhfqxakiiisvxvlxiq---

---PERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLN
QEKNQQLLEQEQNQK*fnhsxlfkk

Frame B:
kfk**k**klilkkrnvkkkntsfsffeigiiknv**kiyilcnsidfimyhfnmxi*sn
f*xxg*sn*skik*ky*ks*xcscxi*xcckssy*xiks*tsktriirxskt*fixxlcn
klhlgit**nskxftkrqq*sfks*xsifkxpk**yrxqywxfn---

---qrdymkkfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkm
plnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfq
ikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst
*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*i
kkkinny*nknkiknnliilxflkn

Frame C:
slnnrnnkn*y*kkgtlkkkillflflklv*LKMYSKKYTSFVIVLILSCIISTCXSNQI
SEXXGKAINQKLNENIEKVEXVVVQFXNVANQVIEXLKVEHQRQELLGEVKHDSLXXSAT
NYIWGLLDKIQSXLPKDNNKVSKVEXAFSXGQNNNIGXSIGDST---

---reti*rns*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trc
h*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk
*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccll
e*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*iks
rkkstiirtrtkskii*sffxf*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        765   0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        765   0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        765   0.0
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/                        765   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        765   0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        765   0.0
SHL708 (SHL708Q) /CSM/SH/SHL7-A/SHL708Q.Seq.d/                        765   0.0
SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/                        765   0.0
SHL645 (SHL645Q) /CSM/SH/SHL6-B/SHL645Q.Seq.d/                        765   0.0
SHL546 (SHL546Q) /CSM/SH/SHL5-B/SHL546Q.Seq.d/                        765   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   765   0.0    6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   7e-26  10
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    38   8e-08  12
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   1e-07  18
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            48   8e-07  15
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    38   4e-06  18
AE017332|AE017332.1 Mycoplasma hyopneumoniae 232, complete genome.    38   6e-06  20
AC005505|AC005505.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    38   1e-05  13
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    46   2e-05  16
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    46   2e-05  14
dna update 2005.11.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   297   6e-79
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    38   0.65
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.85
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    37   1.1
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    37   1.5
(Q54DK4) RecName: Full=Alpha-protein kinase 1;          Short=AK...    37   1.9
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr...    36   3.2
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   3.2
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    35   4.2
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   4.2
protein update 2009. 4.13
PSORT 

 psg: 0.98  gvh: 0.71  alm: 0.47  top: 0.27  tms: 0.00  mit: 0.42  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHR794 is nuc
5' end seq. ID CHR794F
5' end seq. 
>CHR794F.Seq
AAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAA
AAATACTTCTTTTTCTTTTTTTGAAATTGGTATAATTAAAAATGTATAGTAAAAAATATA
CATCCTTTGTAATAGTATTGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAA
TTTCTGAANATGNGGGTAAAGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTG
AANATGTAGTTGTNCAATTTGANAATGTTGCAAATCAAGTTATTGAANAATTAAAAGTTG
AACATCAAAGACAAGAATTATTAGGNGAAGTAAAACATGATTCATTAANANACTCTGCAA
CAAATTACATTTGGGGATTACTTGATAAAATTCAAAGTTNTTTACCAAAAGACAACAATA
AAGTTTCAAAAGTTGAANAAGCATTTTCAAGNGGCCAAAATAATAATATCGGTANCAGTA
TTGGNGATTCAACTNNNNNNNNNN
Length of 5' end seq. 504
3' end seq. ID CHR794Z
3' end seq. 
>CHR794Z.Seq
NNNNNNNNNNCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGT
TCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTC
TCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGA
TGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTA
TGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATT
ACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTC
AAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACA
ACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGA
ATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTA
CTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAA
ACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAA
AAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAA
TCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTC
TTTNCTTTTTAAAAAAC
Length of 3' end seq. 797
Connected seq. ID CHR794P
Connected seq. 
>CHR794P.Seq
AAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAA
AAATACTTCTTTTTCTTTTTTTGAAATTGGTATAATTAAAAATGTATAGTAAAAAATATA
CATCCTTTGTAATAGTATTGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAA
TTTCTGAANATGNGGGTAAAGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTG
AANATGTAGTTGTNCAATTTGANAATGTTGCAAATCAAGTTATTGAANAATTAAAAGTTG
AACATCAAAGACAAGAATTATTAGGNGAAGTAAAACATGATTCATTAANANACTCTGCAA
CAAATTACATTTGGGGATTACTTGATAAAATTCAAAGTTNTTTACCAAAAGACAACAATA
AAGTTTCAAAAGTTGAANAAGCATTTTCAAGNGGCCAAAATAATAATATCGGTANCAGTA
TTGGNGATTCAACT----------CCAGAGAGACTATATGAAGAAATTCATAATTCCAAT
TTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCA
CCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATT
ACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAA
GATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAA
GATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAA
GAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAA
CAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTT
AAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAG
AACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTG
GCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCT
CCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAA
CAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAA
TAATTTAATCATTCTTTNCTTTTTAAAAAAC
Length of connected seq. 1281
Full length Seq ID -
Full length Seq. -
Length of full length seq. -