>CHR779 (CHR779Q) /CSM/CH/CHR7-D/CHR779Q.Seq.d/
XXXXXXXXXXCAAAATGAAATGGNCCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGA
ACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCATCAACAACANCA
AGGACATCAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGANCAACTTAAAGT
TATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCNACAAGAGAACGA
TGCTGTCTNCTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAA
AAATAATAANCAAGAGAATCAAGATGAGAATTTAGTTCAAGAGANNCAACAATCTCCTGA
CCAAATTAAAAATCAATTAAGAAATATTCAACATGACCACCAAATCCAAGAACGCACAAG
ATNAATTAANTCAAGAAAAAAATCACCAATTATTAGAACAAGAACAAAATCAAAAATAAT
TTAATCATTCTTNCTTTTAAAAAA

---NEMXQLELLLEENEEEQFSNKNLQQLNENENHQQXQGHQQVQATNVEQQIVXQLKVI
KEFQRQDQQKKQKIXQENDAVXLSDVEKAQLELDAELAKNNXQENQDENLVQEXQQSPDQ
IKNQLRNIQHDHQIQERTRXIXSRKKSPIIRTRTKSKII*sfxllk

Frame A:
---kmkwxn*nsylkrmkknnfqikiynnlmrmkiinnxkdinkfkqqmlnnkslxnlkl
sknfkdkinkrnkkfxkrtmlsx*vmlkklnlnwmlnwlkiixkrikmri*fkrxnnllt
klkin*eifnmttksknaqdxlxqeknhqlleqeqnqk*fnhsxf*k


Frame B:
---k*ngpirtlt*re*rrtifk*kfttt**e*kssttxrtstsssnkc*ttnr*xt*sy
qrisktrstketknstrercclle*c*ksst*igc*ig*k**xresr*efssrxxtis*p
n*ksikkyst*ppnprthkxn*xkkkitny*nknkiknnliilxfkk


Frame C:
---NEMXQLELLLEENEEEQFSNKNLQQLNENENHQQXQGHQQVQATNVEQQIVXQLKVI
KEFQRQDQQKKQKIXQENDAVXLSDVEKAQLELDAELAKNNXQENQDENLVQEXQQSPDQ
IKNQLRNIQHDHQIQERTRXIXSRKKSPIIRTRTKSKII*sfxllk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR779 (CHR779Q) /CSM/CH/CHR7-D/CHR779Q.Seq.d/                        872   0.0
SHL454 (SHL454Q) /CSM/SH/SHL4-C/SHL454Q.Seq.d/                        801   0.0
SHL122 (SHL122Q) /CSM/SH/SHL1-A/SHL122Q.Seq.d/                        801   0.0
SHK721 (SHK721Q) /CSM/SH/SHK7-A/SHK721Q.Seq.d/                        801   0.0
SHK675 (SHK675Q) /CSM/SH/SHK6-D/SHK675Q.Seq.d/                        801   0.0
SHK422 (SHK422Q) /CSM/SH/SHK4-A/SHK422Q.Seq.d/                        801   0.0
SHJ721 (SHJ721Q) /CSM/SH/SHJ7-A/SHJ721Q.Seq.d/                        801   0.0
SHJ506 (SHJ506Q) /CSM/SH/SHJ5-A/SHJ506Q.Seq.d/                        801   0.0
SHD878 (SHD878Q) /CSM/SH/SHD8-D/SHD878Q.Seq.d/                        801   0.0
SHD854 (SHD854Q) /CSM/SH/SHD8-C/SHD854Q.Seq.d/                        801   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   712   0.0    2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   117   9e-23  6
BH133394|BH133394.1 ENTNI62TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38   5e-04  3
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    40   0.002  6
AF362373|AF362373.2 Dictyostelium discoideum histidine kinase DhkL (dhkL) gene, complete cds.    34   0.017  5
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.18   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.18   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.18   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.18   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.18   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   135   2e-35
AE017343_653(AE017343|pid:none) Cryptococcus neoformans var. neo...    35   0.74
CP001331_197(CP001331|pid:none) Micromonas sp. RCC299 chromosome...    34   2.1
AP009049_1790(AP009049|pid:none) Clostridium kluyveri NBRC 12016...    33   2.8
AP009511_3(AP009511|pid:none) Uncultured Termite group 1 bacteri...    33   2.8
FM992693_398(FM992693|pid:none) Candida dubliniensis CD36 chromo...    33   2.8
CP000673_1992(CP000673|pid:none) Clostridium kluyveri DSM 555, c...    33   2.8
AY188866_1(AY188866|pid:none) Streblomastix strix clone 3 heat s...    33   3.7
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...    33   3.7
AL844506_217(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    32   6.2

 psg: 0.75  gvh: 0.22  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CHR779 is cyt

>CHR779Z.Seq
NNNNNNNNNNCAAAATGAAATGGNCCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGA
ACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCATCAACAACANCA
AGGACATCAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGANCAACTTAAAGT
TATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCNACAAGAGAACGA
TGCTGTCTNCTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAA
AAATAATAANCAAGAGAATCAAGATGAGAATTTAGTTCAAGAGANNCAACAATCTCCTGA
CCAAATTAAAAATCAATTAAGAAATATTCAACATGACCACCAAATCCAAGAACGCACAAG
ATNAATTAANTCAAGAAAAAAATCACCAATTATTAGAACAAGAACAAAATCAAAAATAAT
TTAATCATTCTTNCTTTTAAAAAA