CHR772
Library CH
(Link to library)
Clone ID CHR772
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16313-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHR772 (CHR772Q) /CSM/CH/CHR7-C/CHR772Q.Seq.d/
XXXXXXXXXXTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATACT
GGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGT
GGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATT
GGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGT
GGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCAT
TACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGA
ATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTA
GATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAAT
CCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTA
sequence update 2002. 9.10
Translated Amino Acid sequence
---NCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPIG
QKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRGM
ECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCC


Translated Amino Acid sequence (All Frames)
Frame A:
---kl****rly*r*vfkywylsk*sn*rlcytitsfnwwnypsnhywcits*v*llsnw
skmfisqws*nly*tsnhwwysrinywlcwynnwqgyrslhriryr*stfm**isl*krn
gmscc*wcsrmftiklqmfrlfrssl*etr*fhlfyg*kskfhf**t*llw*iml


Frame B:
---NCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPIG
QKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRGM
ECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCC


Frame C:
---ivmiitivlkisv*ilvfvkiiqltvvlhhhqfqlvelslqpllvyhklsvivvqlv
knvy*smvmkfvlnqqplvvfqn*llvvlvqqlaglqvitqnqvqvihiyvidiivkeew
nvmllmvfqnvyhqttnv*iv*ifivrdkvispvlwlkiqisflvnivvmvnhvv


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL803 (SHL803Q) /CSM/SH/SHL8-A/SHL803Q.Seq.d/ 1029 0.0
SHL783 (SHL783Q) /CSM/SH/SHL7-D/SHL783Q.Seq.d/ 1029 0.0
SHL703 (SHL703Q) /CSM/SH/SHL7-A/SHL703Q.Seq.d/ 1029 0.0
SHL613 (SHL613Q) /CSM/SH/SHL6-A/SHL613Q.Seq.d/ 1029 0.0
SHL572 (SHL572Q) /CSM/SH/SHL5-C/SHL572Q.Seq.d/ 1029 0.0
SHL457 (SHL457Q) /CSM/SH/SHL4-C/SHL457Q.Seq.d/ 1029 0.0
SHL394 (SHL394Q) /CSM/SH/SHL3-D/SHL394Q.Seq.d/ 1029 0.0
SHL385 (SHL385Q) /CSM/SH/SHL3-D/SHL385Q.Seq.d/ 1029 0.0
SHL382 (SHL382Q) /CSM/SH/SHL3-D/SHL382Q.Seq.d/ 1029 0.0
SHL191 (SHL191Q) /CSM/SH/SHL1-D/SHL191Q.Seq.d/ 1029 0.0

own update 2004. 5.10
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18. 42 0.73 3
AC020547|AC020547.7 Homo sapiens BAC clone RP11-134F3 from 2, complete sequence. 46 0.73 1
AC168497|AC168497.2 Strongylocentrotus purpuratus clone R3-3117D9, WORKING DRAFT SEQUENCE, 23 unordered pieces. 34 1.5 2
AC122932|AC122932.4 Mus musculus chromosome 1 clone RP23-16A20, complete sequence. 38 1.9 5
CV752175|CV752175.1 SJL6-009_A06_SJL6-009A06-T3_039.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 2.9 1
CV752026|CV752026.1 SJL6-007_B08_SJL6-007B08-T3_063.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 2.9 1
CV739281|CV739281.1 SJAL_019_73.T3 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 2.9 1
CV581768|CV581768.1 sjmi-1-002_E12_sjmi-1-002E12-T3 Schistosoma japonicum miracidium cDNA Schistosoma japonicum cDNA, mRNA sequence. 44 2.9 1
CV682259|CV682259.1 sjs6-009_H10_sjs6-009H10-T3 SJS Schistosoma japonicum cDNA, mRNA sequence. 44 2.9 1
CV739266|CV739266.1 SJAL_019_64.T3 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 2.9 1
dna update 2005.11.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 298 5e-80
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 174 1e-42
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 52 9e-06
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 41 0.016
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 41 0.020
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 41 0.020
AB011475_1(AB011475|pid:none) Arabidopsis thaliana genomic DNA, ... 37 0.23
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg... 37 0.38
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 37 0.38
BX883044_5(BX883044|pid:none) Rattus norvegicus chromosome 20, m... 34 1.9
protein update 2009. 5.20
PSORT

psg: 0.75 gvh: 0.42 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for CHR772 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHR772Z
3' end seq.
>CHR772Z.Seq
NNNNNNNNNNTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATACT
GGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGT
GGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATT
GGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGT
GGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCAT
TACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGA
ATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTA
GATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAAT
CCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTA
Length of 3' end seq. 529
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -