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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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CHR770
Library CH
(Link to library)
Clone ID CHR770
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11244-1
Original site URL
Representative seq. ID CHR770P
(Link to Original site)
Representative DNA sequence 
>CHR770 (CHR770Q) /CSM/CH/CHR7-C/CHR770Q.Seq.d/
TTCAAAAGAATATAGAAGAATTGGCAAAGGTTAAAGATCAATTGAAAAAAGCAAACTTTG
ATTTAAACATTGCAAATCAAGAACTCTCCTCTAGAAGTCATGAATCATCTGTACTCAAAA
GTAATATGTTTAATACTGTAAAACAAAAAGATCAAGAAATTATTAAATTACGTGGTCAAA
TGAAAAGAGTTGATTCAAATTTCTTTTCACCACCTGGTGGTGATGGTGATGATCATATAA
ATGTTATTAATACACCTGAAGAATCTTCACCACATCATGAATCACCACGTAAACAACAAC
AACAAACATCAAAACCACCTTTAAATCCAAAATCATCAAAACCACCAATTTCATCATCAC
AATTAAAAGAAAAATCAAAATCAAATTTATCATCTTCATCTTCTGATAGTTTATCAAATG
ATTTTAAATCACAAGTTGAAGTAGCACAACAACAACAACCACAACAACAAAATATAGAAT
CAACATTTAACACCAGAACCAACACAAATTATTAAAGAAGAACCAATTGTAACAACACCA
CCACCTGCACCACCAGCACCACCACCTCCACCAATGATGGGAGGAGGACCACCTTCACCA
CCACCACCTTCAATGATGGGAGGAGGXXXXXXXXXXTTGTAATACCTCTTCAATCACCNT
CANTTCTCCNAGTGGTATTGAATTGNATATTACCCCTTCAAAATNTGGTAGTAGAAGAGA
AAAGATAAACTTCANATATCATCCGATAAAGATAAAGGAAAGGAAAAAGA
sequence update 2002.10.25
Translated Amino Acid sequence 
fkri*knwqrlkin*kkqtli*tlqiknsplevmnhlyskviclil*nkkikkllnyvvk
*keliqisfhhlvvmvmii*mllihlknlhhimnhhvnnnnkhqnhl*iqnhqnhqfhhh
n*kknqnqiyhlhllivyqmilnhklk*hnnnnhnnki*NQHLTPEPTQIIKEEPIVTTP
PPAPPAPPPPPMMGGGPPSPPPPSMMGG---

---CNTSSITXXSPSGIELXITPSKXGSRREKINFXYHPIKIKERKK
Translated Amino Acid sequence (All Frames) 
Frame A:
fkri*knwqrlkin*kkqtli*tlqiknsplevmnhlyskviclil*nkkikkllnyvvk
*keliqisfhhlvvmvmii*mllihlknlhhimnhhvnnnnkhqnhl*iqnhqnhqfhhh
n*kknqnqiyhlhllivyqmilnhklk*hnnnnhnnki*NQHLTPEPTQIIKEEPIVTTP
PPAPPAPPPPPMMGGGPPSPPPPSMMGG---

---l*ylfnhxxfsxwy*ixyypfkxw**krkdklxissdkdkgkek

Frame B:
skeyrrigkg*rsiekskl*fkhcksrtll*ks*iictqk*yv*ycktkrsrny*itwsn
eks*fkflfttww*w**sykcy*yt*riftts*itt*ttttnikttfkskiikttnfiit
ikrkikikfiifif**fik*f*its*ssttttttttkyrini*hqnqhkllkknql*qhh
hlhhqhhhlhq*weedhlhhhhlq*wee---

---CNTSSITXXSPSGIELXITPSKXGSRREKINFXYHPIKIKERKK

Frame C:
qknieelakvkdqlkkanfdlnianqelssrshessvlksnmfntvkqkdqeiiklrgqm
krvdsnffsppggdgddhinvintpeessphhesprkqqqqtskpplnpksskppisssq
lkeksksnlsssssdslsndfksqvevaqqqqpqqqniestfntrtntny*rrtncnntt
tcttstttstndgrrttfttttfndgrr---

---viplqspsxlxvvlnxilplqnxvveekr*tsxiir*r*rkgkr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR770 (CHR770Q) /CSM/CH/CHR7-C/CHR770Q.Seq.d/                        571   e-162
CHF806 (CHF806Q) /CSM/CH/CHF8-A/CHF806Q.Seq.d/                        563   e-159
AHD419 (AHD419Q) /CSM/AH/AHD4-A/AHD419Q.Seq.d/                        563   e-159
CHE649 (CHE649Q) /CSM/CH/CHE6-C/CHE649Q.Seq.d/                        369   e-101
AHK164 (AHK164Q) /CSM/AH/AHK1-C/AHK164Q.Seq.d/                        218   1e-55
VHH885 (VHH885Q) /CSM/VH/VHH8-D/VHH885Q.Seq.d/                        180   2e-44
SSK192 (SSK192Q) /CSM/SS/SSK1-D/SSK192Q.Seq.d/                        176   3e-43
SFJ593 (SFJ593Q) /CSM/SF/SFJ5-D/SFJ593Q.Seq.d/                        176   3e-43
CHF689 (CHF689Q) /CSM/CH/CHF6-D/CHF689Q.Seq.d/                        176   3e-43
SFA107 (SFA107Q) /CSM/SF/SFA1-A/SFA107Q.Seq.d/                        153   5e-36
own update 2002.10. 5
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ812237|AJ812237.1 Dictyostelium discoideum mRNA for diaphanous-related formin dDia1  (drf1 gene).   563   0.0    6
CK704826|CK704826.1 ZF101-P00008-DEPE-R_H05 GISZF001_ra Danio rerio cDNA clone IMAGE:7137271 3', mRNA sequence.    48   8e-04  2
AC157959|AC157959.1 Strongylocentrotus purpuratus clone R3-4002F24, WORKING DRAFT SEQUENCE, 13 unordered pieces.    46   0.22   6
DT309464|DT309464.1 JGI_CAAX1233.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1233 3', mRNA sequence.    48   0.27   1
DT356053|DT356053.1 JGI_CABX669.fwd CABX Pimephales promelas ovary 7-8 month adults, females pooled (L) Pimephales promelas cDNA clone CABX669 5', mRNA sequence.    48   0.27   1
DT261354|DT261354.1 JGI_CAAU11420.rev CAAU Pimephales promelas brain 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAU11420 3', mRNA sequence.    48   0.27   1
DT312606|DT312606.1 JGI_CAAX3060.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX3060 3', mRNA sequence.    48   0.27   1
DT354567|DT354567.1 JGI_CABW578.rev CABW Pimephales promelas ovary 7-8 month adults, females pooled (M) Pimephales promelas cDNA clone CABW578 3', mRNA sequence.    48   0.27   1
DT090272|DT090272.1 JGI_ANNK2855.rev ANNK Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNK2855 3', mRNA sequence.    48   0.27   1
DT260484|DT260484.1 JGI_CAAU10938.rev CAAU Pimephales promelas brain 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAU10938 3', mRNA sequence.    48   0.27   1
dna update 2005.11.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9PTD7) RecName: Full=Cingulin;                                       42   0.016
BC091650_1(BC091650|pid:none) Xenopus laevis cingulin, mRNA (cDN...    42   0.016
AF207901_1(AF207901|pid:none) Xenopus laevis cingulin mRNA, comp...    42   0.016
BA000045_3562(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ...    37   0.86
CP000117_314(CP000117|pid:none) Anabaena variabilis ATCC 29413, ...    36   1.1
BA000016_1884(BA000016|pid:none) Clostridium perfringens str. 13...    35   1.9
CR555306_1190(CR555306|pid:none) Azoarcus sp. EbN1 complete geno...    35   1.9
CP000613_3794(CP000613|pid:none) Rhodospirillum centenum SW, com...    35   3.3
CP000312_1813(CP000312|pid:none) Clostridium perfringens SM101, ...    35   3.3
AM494961_220(AM494961|pid:none) Leishmania braziliensis chromoso...    34   5.6
protein update 2009. 4.13
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for CHR770 is nuc
5' end seq. ID CHR770F
5' end seq. 
>CHR770F.Seq
TTCAAAAGAATATAGAAGAATTGGCAAAGGTTAAAGATCAATTGAAAAAAGCAAACTTTG
ATTTAAACATTGCAAATCAAGAACTCTCCTCTAGAAGTCATGAATCATCTGTACTCAAAA
GTAATATGTTTAATACTGTAAAACAAAAAGATCAAGAAATTATTAAATTACGTGGTCAAA
TGAAAAGAGTTGATTCAAATTTCTTTTCACCACCTGGTGGTGATGGTGATGATCATATAA
ATGTTATTAATACACCTGAAGAATCTTCACCACATCATGAATCACCACGTAAACAACAAC
AACAAACATCAAAACCACCTTTAAATCCAAAATCATCAAAACCACCAATTTCATCATCAC
AATTAAAAGAAAAATCAAAATCAAATTTATCATCTTCATCTTCTGATAGTTTATCAAATG
ATTTTAAATCACAAGTTGAAGTAGCACAACAACAACAACCACAACAACAAAATATAGAAT
CAACATTTAACACCAGAACCAACACAAATTATTAAAGAAGAACCAATTGTAACAACACCA
CCACCTGCACCACCAGCACCACCACCTCCACCAATGATGGGAGGAGGACCACCTTCACCA
CCACCACCTTCAATGATGGGAGGAGGNNNNNNNNNN
Length of 5' end seq. 636
3' end seq. ID CHR770Z
3' end seq. 
>CHR770Z.Seq
NNNNNNNNNNTTGTAATACCTCTTCAATCACCNTCANTTCTCCNAGTGGTATTGAATTGN
ATATTACCCCTTCAAAATNTGGTAGTAGAAGAGAAAAGATAAACTTCANATATCATCCGA
TAAAGATAAAGGAAAGGAAAAAGA
Length of 3' end seq. 144
Connected seq. ID CHR770P
Connected seq. 
>CHR770P.Seq
TTCAAAAGAATATAGAAGAATTGGCAAAGGTTAAAGATCAATTGAAAAAAGCAAACTTTG
ATTTAAACATTGCAAATCAAGAACTCTCCTCTAGAAGTCATGAATCATCTGTACTCAAAA
GTAATATGTTTAATACTGTAAAACAAAAAGATCAAGAAATTATTAAATTACGTGGTCAAA
TGAAAAGAGTTGATTCAAATTTCTTTTCACCACCTGGTGGTGATGGTGATGATCATATAA
ATGTTATTAATACACCTGAAGAATCTTCACCACATCATGAATCACCACGTAAACAACAAC
AACAAACATCAAAACCACCTTTAAATCCAAAATCATCAAAACCACCAATTTCATCATCAC
AATTAAAAGAAAAATCAAAATCAAATTTATCATCTTCATCTTCTGATAGTTTATCAAATG
ATTTTAAATCACAAGTTGAAGTAGCACAACAACAACAACCACAACAACAAAATATAGAAT
CAACATTTAACACCAGAACCAACACAAATTATTAAAGAAGAACCAATTGTAACAACACCA
CCACCTGCACCACCAGCACCACCACCTCCACCAATGATGGGAGGAGGACCACCTTCACCA
CCACCACCTTCAATGATGGGAGGAGG----------TTGTAATACCTCTTCAATCACCNT
CANTTCTCCNAGTGGTATTGAATTGNATATTACCCCTTCAAAATNTGGTAGTAGAAGAGA
AAAGATAAACTTCANATATCATCCGATAAAGATAAAGGAAAGGAAAAAGA
Length of connected seq. 760
Full length Seq ID -
Full length Seq. -
Length of full length seq. -