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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR756
Library CH
(Link to library)
Clone ID CHR756
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11543-1
Original site URL
Representative seq. ID CHR756P
(Link to Original site)
Representative DNA sequence 
>CHR756 (CHR756Q) /CSM/CH/CHR7-C/CHR756Q.Seq.d/
ATATTTTGGAATCATATAAAAATAATTTATAATATTATTATTTATAATAATTATTAATAT
TAATGTTATTTTAATTTCTATCTATATATTGACATCATATAAAATAAATTCCATTTCATT
TCAATTTTTTTTATATATATCATTTAATACTCCATATATTTTATTTTTACTTTTGTTTTA
TTTTTATTTTTATTATTTTTTTTTTTNCATNCTTTCTTTTTTTTTTTAAAANAAAAANTN
TAANAANAAAANTGXXXXXXXXXXAATCTGCAGATGCAATCATTGAACATCTTTACAAAG
TGTCGCCAAAGGGTGATGGGTATATCACAATTATGGACTACGACGTGCCAACCAACACAC
AAGAGCATCTAACTTGCTTTGCCGGCGGTATGTATGCATTGGCTGCTGTCTCAAATATTA
CTGGTGGTGATGTTGAAAAGGATAAACTCTATATGAAAGTTGGTGAAGAGGTAACTAAAA
CTTGTACAAAGCTTTACTTAACCTCGGCCACCGGTCTAGGCCCAGAGACCGCTTACTTCA
ACCAAAATGGTGAAATTGAATTCTCTGGCCATTCAGCTGCCCCCCACTACATCCTTCGTC
CTGAAACTGTTGAAAGTTTATTTATTNTCTATCGTNTAACTGGTGATACCATCTATCAAG
ACTGGGCTNGGCAAATCTTTGAATCTATNAACTCTGTCTGTAGAACTANCAATGGCTTTG
CTGGTGTTAAAGATGTCTCCAATATTCATACACAATTCGATGATAATCAACAAAGTTTCT
TTATGGCTGAAACCTTAAAATATCTTTACCTAATCTTCCAACCTTCTTCAGTGATTCCTC
TTAATAAATATGTTTTTAATACTGAAGCCCATCCTGTAAAAATTCAATATCAATAATATT
AATAATATTAAAAATATTAANAATANCAATAATAACAAAAATAAAATAANNTTAAAATAA
AATATCTGGAACCCGTTTTCACATTTT
sequence update 2002.10.25
Translated Amino Acid sequence 
ilesyknnl*yyyl**llilmlf*flsiy*hhik*IPFHFNFFYIYHLILHIFYFYFCFI
FIFIIFFFXXFLFFFKXKXXXXKX---

---SADAIIEHLYKVSPKGDGYITIMDYDVPTNTQEHLTCFAGGMYALAAVSNITGGDVE
KDKLYMKVGEEVTKTCTKLYLTSATGLGPETAYFNQNGEIEFSGHSAAPHYILRPETVES
LFIXYRXTGDTIYQDWAXQIFESXNSVCRTXNGFAGVKDVSNIHTQFDDNQQSFFMAETL
KYLYLIFQPSSVIPLNKYVFNTEAHPVKIQYQ*y**y*ky*xxq**qk*nxxkikylepv
ftf
Translated Amino Acid sequence (All Frames) 
Frame A:
ifwnhikiiyniiiynny*y*cyfnfylyidii*nkfhfisiffiyii*ysiyfiftfvl
flfllfffxhxfffflkxkx*xxx---

---nlqmqslniftkcrqrvmgisqlwtttcqpthksi*lalpavcmhwllsqillvvml
krinsi*klvkr*lklvqsft*prppv*aqrpltstkmvklnslaiqlppttsfvlkllk
vylxsiv*lvipsiktglgkslnlxtlsvelxmallvlkmspifihnsmiinkvslwlkp
*nift*ssnllq*fllinmflilkpil*kfninninniknixnxnnnknkixlk*niwnp
fshf

Frame B:
yfgii*k*fiillfiiiininvilisiyiltsykinsisfqfflyisfntpyilflllfy
fyfyyfffxxlsfff*xkxxxxkx---

---icrcnh*tslqsvakg*wvyhnyglrranqhtrasnllcrryvcigcclkyyww*c*
kg*tlyesw*rgn*nlykallnlghrsrprdrllqpkw*n*ilwpfscpplhpss*nc*k
fiyxlsxnw*yhlsrlgxanl*iyxlcl*nxqwlcwc*rclqysytir**stkflyg*nl
kislpnlptffsdss**icf*y*spscknsisiiliilkilxixiitkik*x*nkisgtr
fhi

Frame C:
ilesyknnl*yyyl**llilmlf*flsiy*hhik*IPFHFNFFYIYHLILHIFYFYFCFI
FIFIIFFFXXFLFFFKXKXXXXKX---

---SADAIIEHLYKVSPKGDGYITIMDYDVPTNTQEHLTCFAGGMYALAAVSNITGGDVE
KDKLYMKVGEEVTKTCTKLYLTSATGLGPETAYFNQNGEIEFSGHSAAPHYILRPETVES
LFIXYRXTGDTIYQDWAXQIFESXNSVCRTXNGFAGVKDVSNIHTQFDDNQQSFFMAETL
KYLYLIFQPSSVIPLNKYVFNTEAHPVKIQYQ*y**y*ky*xxq**qk*nxxkikylepv
ftf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC313 (SLC313Q) /CSM/SL/SLC3-A/SLC313Q.Seq.d/                       1183   0.0
CHR756 (CHR756Q) /CSM/CH/CHR7-C/CHR756Q.Seq.d/                       1183   0.0
AFI117 (AFI117Q) /CSM/AF/AFI1-A/AFI117Q.Seq.d/                       1168   0.0
SLC501 (SLC501Q) /CSM/SL/SLC5-A/SLC501Q.Seq.d/                        835   0.0
AHR377 (AHR377Q) /CSM/AH/AHR3-D/AHR377Q.Seq.d/                        285   6e-76
CHQ655 (CHQ655Q) /CSM/CH/CHQ6-C/CHQ655Q.Seq.d/                         68   3e-10
SSA671 (SSA671Q) /CSM/SS/SSA6-C/SSA671Q.Seq.d/                         52   2e-05
SFI437 (SFI437Q) /CSM/SF/SFI4-B/SFI437Q.Seq.d/                         52   2e-05
SFI337 (SFI337Q) /CSM/SF/SFI3-B/SFI337Q.Seq.d/                         46   0.001
SFI385 (SFI385Q) /CSM/SF/SFI3-D/SFI385Q.Seq.d/                         44   0.004
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DV498091| Man1a2-prov protein - Xenopus laevis. Score = 142 bits (358), Expect = 6e-33, mRNA sequence.    40   0.005  2
DT726269| PREDICTED: similar to mannosyl-oligosaccharide. Score = 348 bits (892), Expect = 9e-95, mRNA sequence.    50   0.089  1
DT726053| PREDICTED: similar to mannosyl-oligosaccharide. Score = 348 bits (892), Expect = 9e-95, mRNA sequence.    50   0.089  1
DT726032| PREDICTED: similar to mannosyl-oligosaccharide. Score = 348 bits (892), Expect = 1e-94, mRNA sequence.    50   0.089  1
DT245444|DT245444.1 JGI_CAAU721.fwd CAAU Pimephales promelas brain 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAU721 5', mRNA sequence.    38   0.26   2
DT986686|DT986686.1 CLJ226-F06.x1d-t SHGC-CLJ Gasterosteus aculeatus cDNA clone CLJ226-F06 3', mRNA sequence.    46   1.4    1
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    46   1.4    1
AL356120|AL356120.10 Human DNA sequence from clone RP11-365K22 on chromosome 13.    46   1.4    1
CX155294|CX155294.1 TfEST072F09 Tf30924 cDNA Library Tritrichomonas foetus cDNA 5', mRNA sequence.    38   3.4    2
DT462770|DT462770.1 GH_CHX12J09.f GH_CHX Gossypium hirsutum cDNA clone GH_CHX12J09 5', mRNA sequence.    34   3.5    2
dna update 2005.11.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P53624) RecName: Full=Mannosyl-oligosaccharide alpha-1,2-mannos...   167   5e-40
(P53625) RecName: Full=Mannosyl-oligosaccharide alpha-1,2-mannos...   167   5e-40
AE014298_1493(AE014298|pid:none) Drosophila melanogaster chromos...   167   5e-40
S60709(S60709) alpha 1,2 mannosidase precursor - fruit fly (Dros...   166   1e-39
AK144486_1(AK144486|pid:none) Mus musculus 1 month neonate cereb...   157   5e-37
BC030443_1(BC030443|pid:none) Mus musculus mannosidase, alpha, c...   157   5e-37
AL031280_2(AL031280|pid:none) Human DNA sequence from clone RP1-...   154   6e-36
(Q9NR34) RecName: Full=Mannosyl-oligosaccharide 1,2-alpha-mannos...   154   6e-36
BC090336_1(BC090336|pid:none) Rattus norvegicus mannosidase 1, a...   153   7e-36
BC076725_1(BC076725|pid:none) Xenopus laevis mannosidase, alpha,...   149   1e-34
protein update 2009. 4.13
PSORT 

 psg: 1.03  gvh: 0.51  alm: 0.15  top: 0.57  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CHR756 is cyt
5' end seq. ID CHR756F
5' end seq. 
>CHR756F.Seq
ATATTTTGGAATCATATAAAAATAATTTATAATATTATTATTTATAATAATTATTAATAT
TAATGTTATTTTAATTTCTATCTATATATTGACATCATATAAAATAAATTCCATTTCATT
TCAATTTTTTTTATATATATCATTTAATACTCCATATATTTTATTTTTACTTTTGTTTTA
TTTTTATTTTTATTATTTTTTTTTTTNCATNCTTTCTTTTTTTTTTTAAAANAAAAANTN
TAANAANAAAANTGNNNNNNNNNN
Length of 5' end seq. 264
3' end seq. ID CHR756Z
3' end seq. 
>CHR756Z.Seq
NNNNNNNNNNAATCTGCAGATGCAATCATTGAACATCTTTACAAAGTGTCGCCAAAGGGT
GATGGGTATATCACAATTATGGACTACGACGTGCCAACCAACACACAAGAGCATCTAACT
TGCTTTGCCGGCGGTATGTATGCATTGGCTGCTGTCTCAAATATTACTGGTGGTGATGTT
GAAAAGGATAAACTCTATATGAAAGTTGGTGAAGAGGTAACTAAAACTTGTACAAAGCTT
TACTTAACCTCGGCCACCGGTCTAGGCCCAGAGACCGCTTACTTCAACCAAAATGGTGAA
ATTGAATTCTCTGGCCATTCAGCTGCCCCCCACTACATCCTTCGTCCTGAAACTGTTGAA
AGTTTATTTATTNTCTATCGTNTAACTGGTGATACCATCTATCAAGACTGGGCTNGGCAA
ATCTTTGAATCTATNAACTCTGTCTGTAGAACTANCAATGGCTTTGCTGGTGTTAAAGAT
GTCTCCAATATTCATACACAATTCGATGATAATCAACAAAGTTTCTTTATGGCTGAAACC
TTAAAATATCTTTACCTAATCTTCCAACCTTCTTCAGTGATTCCTCTTAATAAATATGTT
TTTAATACTGAAGCCCATCCTGTAAAAATTCAATATCAATAATATTAATAATATTAAAAA
TATTAANAATANCAATAATAACAAAAATAAAATAANNTTAAAATAAAATATCTGGAACCC
GTTTTCACATTTT
Length of 3' end seq. 733
Connected seq. ID CHR756P
Connected seq. 
>CHR756P.Seq
ATATTTTGGAATCATATAAAAATAATTTATAATATTATTATTTATAATAATTATTAATAT
TAATGTTATTTTAATTTCTATCTATATATTGACATCATATAAAATAAATTCCATTTCATT
TCAATTTTTTTTATATATATCATTTAATACTCCATATATTTTATTTTTACTTTTGTTTTA
TTTTTATTTTTATTATTTTTTTTTTTNCATNCTTTCTTTTTTTTTTTAAAANAAAAANTN
TAANAANAAAANTG----------AATCTGCAGATGCAATCATTGAACATCTTTACAAAG
TGTCGCCAAAGGGTGATGGGTATATCACAATTATGGACTACGACGTGCCAACCAACACAC
AAGAGCATCTAACTTGCTTTGCCGGCGGTATGTATGCATTGGCTGCTGTCTCAAATATTA
CTGGTGGTGATGTTGAAAAGGATAAACTCTATATGAAAGTTGGTGAAGAGGTAACTAAAA
CTTGTACAAAGCTTTACTTAACCTCGGCCACCGGTCTAGGCCCAGAGACCGCTTACTTCA
ACCAAAATGGTGAAATTGAATTCTCTGGCCATTCAGCTGCCCCCCACTACATCCTTCGTC
CTGAAACTGTTGAAAGTTTATTTATTNTCTATCGTNTAACTGGTGATACCATCTATCAAG
ACTGGGCTNGGCAAATCTTTGAATCTATNAACTCTGTCTGTAGAACTANCAATGGCTTTG
CTGGTGTTAAAGATGTCTCCAATATTCATACACAATTCGATGATAATCAACAAAGTTTCT
TTATGGCTGAAACCTTAAAATATCTTTACCTAATCTTCCAACCTTCTTCAGTGATTCCTC
TTAATAAATATGTTTTTAATACTGAAGCCCATCCTGTAAAAATTCAATATCAATAATATT
AATAATATTAAAAATATTAANAATANCAATAATAACAAAAATAAAATAANNTTAAAATAA
AATATCTGGAACCCGTTTTCACATTTT
Length of connected seq. 977
Full length Seq ID -
Full length Seq. -
Length of full length seq. -