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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR748
Library CH
(Link to library)
Clone ID CHR748
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13162-1|Contig-U15905-1
Original site URL
Representative seq. ID CHR748P
(Link to Original site)
Representative DNA sequence 
>CHR748 (CHR748Q) /CSM/CH/CHR7-B/CHR748Q.Seq.d/
TCATCAAATTCATCAACACCACCACCACAATTTTCAAATAATAATAATAACAGCTATAAC
AACAGCTATAACAATAACATTAATAATAATGGATTTGATAATAATTTAAAAAGTAAACAA
AAAGCAGTTGTATTATATNCAGGTAAACTAAAATCAAATTTAAATTTAGATGTTNGGAAT
TGGGGATTAAAAGGTGATAATAGTNGTTATTTTGGTTTATTTTCCAAGAGCATGGACAGT
TTATGAAGAACCTCATCCTGATATTAGATTAANTTGTAAACAAGTTTCACCAXXXXXXXX
XXGCTGCATTAAAAGTGGCAGCAGAGATTGCCAAGATTTTAGGTTTCAATGAAGATGAAT
CCATCTATAATGCAATCTTTGAAAAGGGTTCCAAATCTTTCACTAAAAAACTTTGGAATG
GTCATTACTTTAATTATGATTCAAGTAAAAGTGTTCACTCTGACTCAATCATGTCTGATA
TGTTAGCTGGTCATTGGTATCTACTATCATGTGGTTTGAAATCATATATGACATTTGATC
AAGCCCTATCCTCACTATCAATCATTAATGAATACAATGTCAAATCTTATAGTAAAGGAG
TTTGTGGTGCTGTTAATGGTATGCGTCCAGAAGGTACAGTAGATACAACTTGTTTACAAT
CTAGTGAAGTTTGGATTGGTACTTCATTCTCTTTAGCAGCAACAATGATATTACATCATA
TGGATTCTGATGCATGGGATCTAGTAAAGGGTATAGTTAATTCATCCTATCAAAAATGGG
GTTTCCAATATCAAACACCAGAAGCATGGGATCAAAATGGTTGTTTTAGAGCAGCTTCCT
ATATGAGACCACTTTCAATTTGGTCAATTCAATGGGCATTACAAAAAAGAAAATATTTTG
ATTTTTATGATGAATCTTTAAAATCTCAACAATCAAATATAAATAATGGTACTAATAATA
ATAATAATAATAATAATACTAATAATAATAATAATAATAATAACAAGGTTCAAATTCTTT
ATTAAATTAGAA
sequence update 2002.10.25
Translated Amino Acid sequence 
hqihqhhhhnfqiiiitaittaititliimdliii*kvnkkqlyyxqvn*nqi*i*mxgi
gd*KVIIVVILVYFPRAWTVYEEPHPDIRLXCKQVSP---

---AALKVAAEIAKILGFNEDESIYNAIFEKGSKSFTKKLWNGHYFNYDSSKSVHSDSIM
SDMLAGHWYLLSCGLKSYMTFDQALSSLSIINEYNVKSYSKGVCGAVNGMRPEGTVDTTC
LQSSEVWIGTSFSLAATMILHHMDSDAWDLVKGIVNSSYQKWGFQYQTPEAWDQNGCFRA
ASYMRPLSIWSIQWALQKRKYFDFYDESLKSQQSNINNGTNNNNNNNNTNNNNNNNNKVQ
ILY*ir
Translated Amino Acid sequence (All Frames) 
Frame A:
ssnsstpppqfsnnnnnsynnsynnninnngfdnnlkskqkavvlyxgklksnlnldvxn
wglkgdnsxyfglfsksmdsl*rtss*y*ixl*tsft---

---AALKVAAEIAKILGFNEDESIYNAIFEKGSKSFTKKLWNGHYFNYDSSKSVHSDSIM
SDMLAGHWYLLSCGLKSYMTFDQALSSLSIINEYNVKSYSKGVCGAVNGMRPEGTVDTTC
LQSSEVWIGTSFSLAATMILHHMDSDAWDLVKGIVNSSYQKWGFQYQTPEAWDQNGCFRA
ASYMRPLSIWSIQWALQKRKYFDFYDESLKSQQSNINNGTNNNNNNNNTNNNNNNNNKVQ
ILY*ir

Frame B:
hqihqhhhhnfqiiiitaittaititliimdliii*kvnkkqlyyxqvn*nqi*i*mxgi
gd*KVIIVVILVYFPRAWTVYEEPHPDIRLXCKQVSP---

---lh*kwqqrlprf*vsmkmnpsimqslkrvpnlslknfgmvitlimiqvkvftltqsc
lic*lvigiyyhvv*nhi*hlikpyphyqslmntmsnlivkefvvllmvcvqkvq*iqlv
ynlvkfglvlhsl*qqq*yyiiwilmhgi**rv*lihpikngvsnikhqkhgikmvvleq
lpi*dhfqfgqfnghykkenilifmmnl*nlnnqi*imvliiiiiiiiliiiiiiitrfk
ffikle

Frame C:
ikfinttttifk****ql*qql*q*h***wi***fkk*tkssciixr*tkikfkfrcxel
gikr***xlfwfifqehgqfmknlilild*xvnkfh---

---ciksgsrdcqdfrfq*r*ihl*cnl*kgfqifh*ktlewsll*l*fk*kcsl*lnhv
*yvswslvstimwfeiiydi*sspiltinh**iqcqil**rslwcc*wyasrrysrynlf
ti**sldwyfilfssnnditsygf*cmgsskgys*filskmgfpisntrsmgskwlf*ss
flyettfnlvnsmgitkkkif*fl**ifkistikyk*wy********y********qgsn
slln*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR748 (CHR748Q) /CSM/CH/CHR7-B/CHR748Q.Seq.d/                       1592   0.0
CHG280 (CHG280Q) /CSM/CH/CHG2-D/CHG280Q.Seq.d/                       1241   0.0
VHG533 (VHG533Q) /CSM/VH/VHG5-B/VHG533Q.Seq.d/                       1086   0.0
VHO255 (VHO255Q) /CSM/VH/VHO2-C/VHO255Q.Seq.d/                        936   0.0
CHE890 (CHE890Q) /CSM/CH/CHE8-D/CHE890Q.Seq.d/                        353   3e-96
CHO220 (CHO220Q) /CSM/CH/CHO2-A/CHO220Q.Seq.d/                        186   5e-46
VSK470 (VSK470Q) /CSM/VS/VSK4-C/VSK470Q.Seq.d/                         38   0.26
VSG879 (VSG879Q) /CSM/VS/VSG8-D/VSG879Q.Seq.d/                         38   0.26
VSG270 (VSG270Q) /CSM/VS/VSG2-C/VSG270Q.Seq.d/                         38   0.26
VSD243 (VSD243Q) /CSM/VS/VSD2-B/VSD243Q.Seq.d/                         38   0.26
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC024799|AC024799.1 Caenorhabditis elegans cosmid Y49C4A, complete sequence.    56   8e-04  2
AC006788|AC006788.1 Caenorhabditis elegans clone Y49C4, WORKING DRAFT SEQUENCE, 2 unordered pieces.    56   0.002  1
AC097362|AC097362.7 Rattus norvegicus clone CH230-3E15, WORKING DRAFT SEQUENCE, 2 unordered pieces.    52   0.024  1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    32   0.030  9
BF916367|BF916367.1 IL3-UT0115-111200-377-G08 UT0115 Homo sapiens cDNA, mRNA sequence.    50   0.093  1
AC004676|AC004676.1 Homo sapiens chromosome X clone bWXD171, WORKING DRAFT SEQUENCE, 1 ordered pieces.    50   0.093  1
Z83826|Z83826.13 Human DNA sequence from clone RP3-473B4 on chromosome X.    50   0.093  1
CR749766|CR749766.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-107J20.    40   0.19   5
CR391930|CR391930.9 Zebrafish DNA sequence from clone CH211-154B16 in linkage group 15.    48   0.37   1
BX324210|BX324210.12 Zebrafish DNA sequence from clone DKEY-20I20 in linkage group 22.    48   0.37   1
dna update 2005.11.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU674844_1(EU674844|pid:none) Helianthus annuus isolate AnnNM1_3...   168   2e-40
EU674899_1(EU674899|pid:none) Helianthus petiolaris isolate PetN...   168   3e-40
EU674913_1(EU674913|pid:none) Helianthus petiolaris isolate PetU...   167   4e-40
EU674840_1(EU674840|pid:none) Helianthus annuus isolate AnnNM1_1...   167   5e-40
EU674904_1(EU674904|pid:none) Helianthus petiolaris isolate PetA...   167   5e-40
AK072300_1(AK072300|pid:none) Oryza sativa Japonica Group cDNA c...   166   9e-40
EU674854_1(EU674854|pid:none) Helianthus annuus isolate AnnAZ1_2...   166   9e-40
AK098954_1(AK098954|pid:none) Oryza sativa Japonica Group cDNA c...   159   1e-37
AK226971_1(AK226971|pid:none) Arabidopsis thaliana mRNA for hypo...   159   1e-37
AC119671_4(AC119671|pid:none) Oryza sativa (japonica cultivar-gr...   159   1e-37
protein update 2009. 4.13
PSORT 

 psg: 0.99  gvh: 0.68  alm: 0.41  top: 0.37  tms: 0.00  mit: 0.33  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: vacuolar

>> prediction for CHR748 is exc
5' end seq. ID CHR748F
5' end seq. 
>CHR748F.Seq
TCATCAAATTCATCAACACCACCACCACAATTTTCAAATAATAATAATAACAGCTATAAC
AACAGCTATAACAATAACATTAATAATAATGGATTTGATAATAATTTAAAAAGTAAACAA
AAAGCAGTTGTATTATATNCAGGTAAACTAAAATCAAATTTAAATTTAGATGTTNGGAAT
TGGGGATTAAAAGGTGATAATAGTNGTTATTTTGGTTTATTTTCCAAGAGCATGGACAGT
TTATGAAGAACCTCATCCTGATATTAGATTAANTTGTAAACAAGTTTCACCANNNNNNNN
NN
Length of 5' end seq. 302
3' end seq. ID CHR748Z
3' end seq. 
>CHR748Z.Seq
NNNNNNNNNNGCTGCATTAAAAGTGGCAGCAGAGATTGCCAAGATTTTAGGTTTCAATGA
AGATGAATCCATCTATAATGCAATCTTTGAAAAGGGTTCCAAATCTTTCACTAAAAAACT
TTGGAATGGTCATTACTTTAATTATGATTCAAGTAAAAGTGTTCACTCTGACTCAATCAT
GTCTGATATGTTAGCTGGTCATTGGTATCTACTATCATGTGGTTTGAAATCATATATGAC
ATTTGATCAAGCCCTATCCTCACTATCAATCATTAATGAATACAATGTCAAATCTTATAG
TAAAGGAGTTTGTGGTGCTGTTAATGGTATGCGTCCAGAAGGTACAGTAGATACAACTTG
TTTACAATCTAGTGAAGTTTGGATTGGTACTTCATTCTCTTTAGCAGCAACAATGATATT
ACATCATATGGATTCTGATGCATGGGATCTAGTAAAGGGTATAGTTAATTCATCCTATCA
AAAATGGGGTTTCCAATATCAAACACCAGAAGCATGGGATCAAAATGGTTGTTTTAGAGC
AGCTTCCTATATGAGACCACTTTCAATTTGGTCAATTCAATGGGCATTACAAAAAAGAAA
ATATTTTGATTTTTATGATGAATCTTTAAAATCTCAACAATCAAATATAAATAATGGTAC
TAATAATAATAATAATAATAATAATACTAATAATAATAATAATAATAATAACAAGGTTCA
AATTCTTTATTAAATTAGAA
Length of 3' end seq. 740
Connected seq. ID CHR748P
Connected seq. 
>CHR748P.Seq
TCATCAAATTCATCAACACCACCACCACAATTTTCAAATAATAATAATAACAGCTATAAC
AACAGCTATAACAATAACATTAATAATAATGGATTTGATAATAATTTAAAAAGTAAACAA
AAAGCAGTTGTATTATATNCAGGTAAACTAAAATCAAATTTAAATTTAGATGTTNGGAAT
TGGGGATTAAAAGGTGATAATAGTNGTTATTTTGGTTTATTTTCCAAGAGCATGGACAGT
TTATGAAGAACCTCATCCTGATATTAGATTAANTTGTAAACAAGTTTCACCA--------
--GCTGCATTAAAAGTGGCAGCAGAGATTGCCAAGATTTTAGGTTTCAATGAAGATGAAT
CCATCTATAATGCAATCTTTGAAAAGGGTTCCAAATCTTTCACTAAAAAACTTTGGAATG
GTCATTACTTTAATTATGATTCAAGTAAAAGTGTTCACTCTGACTCAATCATGTCTGATA
TGTTAGCTGGTCATTGGTATCTACTATCATGTGGTTTGAAATCATATATGACATTTGATC
AAGCCCTATCCTCACTATCAATCATTAATGAATACAATGTCAAATCTTATAGTAAAGGAG
TTTGTGGTGCTGTTAATGGTATGCGTCCAGAAGGTACAGTAGATACAACTTGTTTACAAT
CTAGTGAAGTTTGGATTGGTACTTCATTCTCTTTAGCAGCAACAATGATATTACATCATA
TGGATTCTGATGCATGGGATCTAGTAAAGGGTATAGTTAATTCATCCTATCAAAAATGGG
GTTTCCAATATCAAACACCAGAAGCATGGGATCAAAATGGTTGTTTTAGAGCAGCTTCCT
ATATGAGACCACTTTCAATTTGGTCAATTCAATGGGCATTACAAAAAAGAAAATATTTTG
ATTTTTATGATGAATCTTTAAAATCTCAACAATCAAATATAAATAATGGTACTAATAATA
ATAATAATAATAATAATACTAATAATAATAATAATAATAATAACAAGGTTCAAATTCTTT
ATTAAATTAGAA
Length of connected seq. 1022
Full length Seq ID -
Full length Seq. -
Length of full length seq. -