CHR745
Library CH
(Link to library)
Clone ID CHR745
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15541-1
Original site URL
Representative seq. ID CHR745P
(Link to Original site)
Representative DNA sequence
>CHR745 (CHR745Q) /CSM/CH/CHR7-B/CHR745Q.Seq.d/
ATTCGACTAATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGCTTTGGCCAATGC
AAATCATCAATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACA
ACAAAACTTTCCATTATTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGA
TGTACAAATTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAG
CGAAAGAAATGAAATTTTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGT
CATTAAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGT
AGCTATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATT
AATCCCAGCATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCT
TCAAACACTTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATGTCAAAATATTCAGA
TAATGTATTAAGAGTTATTACAGATGGTATCAAAGATGAATCACAAAATGTAAAATTAGC
AGGTATTCAAGCATTATGCTTTGCATTAGAATTTGTAAAGAAAAATTTTGATATXXXXXX
XXXXTCGCAAGTACCNTCAAAGAAACCATTAAACCATACGCTCAACAAATGTTGGTCCTT
TTATTCAACGTATTCAAGAATCAATCAATCATCATCTACGAAGAGGCTCTCCTTGCCATT
GGTGCCATCATCTTGGCTTTGGATGCTGATTTCGAACCTTACTTTTCAAATTTCCTTCCA
ATCCTTGTAAACTTCCTCAAGAATGTCGATTTTGGTTCCGTAACAAACATTGCAATTGGT
ATCGTTGGTGATTTAGCTCGTGCTTTTGGTAAGAAATTCTCTGGTGTTTGCGCTGAAATC
GTTCCATTGATCGTTAGTGATCTCACCAATCCAAAACTCTCTATGAATGCTAAACCAAGT
GCTATCAGTTGTCTCTGTGATATCGCCATTAGTGTTGGTGCCGATTTCATTCCTTTCCTT
CCAATGGTTATGCCAATTCTTCATCAAGCCTCTACCACTGAAATCGATGATGAAGACTTT
TTAAATGAACTCCGTGAAACTATCTTCCAAACTTACACTGGTATCATTCAAGGTCTCAAG
AGTGATAATCAAATCGAAGAACTCAATCAATACATCAATCCAATGTTAGACTTTGTTGTA
CTTATAAATGATGATCCAGAACGTTATGATTCTGTTACTTCTGCTGCCTTGGCCTTACTT
GGTGATTTAGCTCAAGCTATGGGTGATAGTATTAGAAATCTTTTAAACAACAAAATAATT
AGAGAATTTGTAAACAATGGTATTCAAAAAGGTATACCATATGCNCATTATGCNATTTAT
CAATTTTTCCAAAAAAACATAATTTCAAAAAGA
sequence update 2002.10.25
Translated Amino Acid sequence
fd*ynilq*KMDLYQALANANHQSESVRSEAESFLTNASQQNFPLFIHSLTLELTNEERD
VQIRQLAGIVLKNSIHSKNSERNEILIKQWASIEPNARNVIKNTLLQGLGSPKYEARHTV
AIVISRIGLIEIPYAMWEELIPALFKNIESGSEGIKQSTLQTLGYICEEIDPNVMSKYSD
NVLRVITDGIKDESQNVKLAGIQALCFALEFVKKNFD---

---ASTXKETIKPYAQQMLVLLFNVFKNQSIIIYEEALLAIGAIILALDADFEPYFSNFL
PILVNFLKNVDFGSVTNIAIGIVGDLARAFGKKFSGVCAEIVPLIVSDLTNPKLSMNAKP
SAISCLCDIAISVGADFIPFLPMVMPILHQASTTEIDDEDFLNELRETIFQTYTGIIQGL
KSDNQIEELNQYINPMLDFVVLINDDPERYDSVTSAALALLGDLAQAMGDSIRNLLNNKI
IREFVNNGIQKGIPYAHYAIYQFFQKNIISKR


Translated Amino Acid sequence (All Frames)
Frame A:
irli*htpvkngslssfgqckssi*kcsfrsriifnqcittklsiiyslinirtyk*rer
ctnssisrycfke*ysl*k*rkk*nfn*tmgin*tkc*krh*kysftrfritki*stshc
sycnftywsy*nsirnvgrinpsii*kh*kwfrry*tiyssntwlyl*rn*skcyvkifr
*ciksyyrwyqr*itkckisryssimlcirickekf*y---

---sqvpskkplnhtlnkcwsfystysrinqssstkrlslplvpsswlwmlisnltfqis
fqsl*tssrmsilvp*qtlqlvslvi*lvllvrnslvfalksfh*slvispiqnsl*mln
qvlsvvsvisplvlvpisflsfqwlcqffikplplksmmktf*mnsvklsskltlvsfkv
srviiksknsintsiqc*tllyl*mmiqnvmilllllpwpylvi*lklwvivleif*ttk
*lenl*tmvfkkvyhmximxfinfskkt*fqk

Frame B:
fd*ynilq*KMDLYQALANANHQSESVRSEAESFLTNASQQNFPLFIHSLTLELTNEERD
VQIRQLAGIVLKNSIHSKNSERNEILIKQWASIEPNARNVIKNTLLQGLGSPKYEARHTV
AIVISRIGLIEIPYAMWEELIPALFKNIESGSEGIKQSTLQTLGYICEEIDPNVMSKYSD
NVLRVITDGIKDESQNVKLAGIQALCFALEFVKKNFD---

---rkyxqrnh*tirstnvgpfiqriqesinhhlrrgspchwchhlgfgc*frtllfkfp
snpcklpqecrfwfrnkhcnwyrw*fsscfw*eilwclr*nrsidr**shqsktlyec*t
kcyqlsl*yrh*cwcrfhsfpsngyansssslyh*nr**rlfk*tp*nylpnlhwyhsrs
qe**snrrtqsihqsnvrlcctyk**srtl*fcyfcclgltw*fsssyg**y*ksfkqqn
n*rickqwyskryticxlcxlsifpkkhnfkk

Frame C:
stnitysskkwifiklwpmqiinlkvfvqkpnhf*pmhhnktfhylfth*h*nlqmkrem
ykfvn*qvlf*rivftlkiakemkf*lnnghqlnqmletslkilfykv*dhqnmkhvtl*
ll*fhvlvllkfhtqcgkn*sqhylktlkvvqkvlnnllfkhlvifvkkliqmlcqniqi
my*ellqmvskmnhkm*n*qvfkhyalh*nl*rkili---

---ASTXKETIKPYAQQMLVLLFNVFKNQSIIIYEEALLAIGAIILALDADFEPYFSNFL
PILVNFLKNVDFGSVTNIAIGIVGDLARAFGKKFSGVCAEIVPLIVSDLTNPKLSMNAKP
SAISCLCDIAISVGADFIPFLPMVMPILHQASTTEIDDEDFLNELRETIFQTYTGIIQGL
KSDNQIEELNQYINPMLDFVVLINDDPERYDSVTSAALALLGDLAQAMGDSIRNLLNNKI
IREFVNNGIQKGIPYAHYAIYQFFQKNIISKR

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR745 (CHR745Q) /CSM/CH/CHR7-B/CHR745Q.Seq.d/ 2801 0.0
AHD723 (AHD723Q) /CSM/AH/AHD7-A/AHD723Q.Seq.d/ 1532 0.0
VHB409 (VHB409Q) /CSM/VH/VHB4-A/VHB409Q.Seq.d/ 1513 0.0
AHJ169 (AHJ169Q) /CSM/AH/AHJ1-C/AHJ169Q.Seq.d/ 1513 0.0
AHF105 (AHF105Q) /CSM/AH/AHF1-A/AHF105Q.Seq.d/ 1513 0.0
AHA682 (AHA682Q) /CSM/AH/AHA6-D/AHA682Q.Seq.d/ 1513 0.0
VHD795 (VHD795Q) /CSM/VH/VHD7-D/VHD795Q.Seq.d/ 1509 0.0
VHA252 (VHA252Q) /CSM/VH/VHA2-C/VHA252Q.Seq.d/ 1509 0.0
AHC363 (AHC363Q) /CSM/AH/AHC3-C/AHC363Q.Seq.d/ 1509 0.0
VHC168 (VHC168Q) /CSM/VH/VHC1-C/VHC168Q.Seq.d/ 1507 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AP002799|AP002799.3 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-806N19. 38 0.29 2
AC024715|AC024715.3 Homo sapiens chromosome 11 clone RP11-201M22, WORKING DRAFT SEQUENCE, 13 unordered pieces. 38 0.29 2
AL358112|AL358112.20 Human DNA sequence from clone RP11-311B1 on chromosome 6. 44 1.3 5
CV748470|CV748470.1 SJL_35_004__5-4__08.T7_012.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence. 46 2.1 1
CV741544|CV741544.1 SJAL_033_76.T7 SJL Schistosoma japonicum cDNA, mRNA sequence. 46 2.1 1
CV740288|CV740288.1 SJAL_026_17.T7 SJL Schistosoma japonicum cDNA, mRNA sequence. 46 2.1 1
CV737780|CV737780.1 SJAL_010_44.T7 SJL Schistosoma japonicum cDNA, mRNA sequence. 46 2.1 1
BU802954|BU802954.1 SJFAPE03 SJF Schistosoma japonicum cDNA, mRNA sequence. 46 2.1 1
AC118385|AC118385.4 Rattus norvegicus clone CH230-42B13, WORKING DRAFT SEQUENCE, 1 ordered piece. 46 2.1 1
CL715650|CL715650.1 OR_BBa0041J09.r OR_BBa Oryza rufipogon genomic clone OR_BBa0041J09 3', genomic survey sequence. 46 2.1 1
dna update 2005.11.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE017344_109(AE017344|pid:none) Cryptococcus neoformans var. neo... 134 8e-30
BC052711_1(BC052711|pid:none) Mus musculus karyopherin (importin... 128 4e-28
(P70168) RecName: Full=Importin subunit beta-1; AltName: Full=Ka... 128 4e-28
AK314780_1(AK314780|pid:none) Homo sapiens cDNA, FLJ95650, highl... 127 1e-27
PDBN(1IBR)B MOL_ID: 1;MOL_ID: 1; MOLECULE: RAN; MOLECULE: RAN; C... 127 1e-27
(Q14974) RecName: Full=Importin subunit beta-1; AltName: Full=Ka... 127 1e-27
FM992688_205(FM992688|pid:none) Candida dubliniensis CD36 chromo... 120 2e-25
BX842622_14(BX842622|pid:none) Neurospora crassa DNA linkage gro... 119 3e-25
(P52296) RecName: Full=Importin subunit beta-1; AltName: Full=Ka... 118 6e-25
CR382135_96(CR382135|pid:none) Debaryomyces hansenii strain CBS7... 117 1e-24
protein update 2009. 4.13
PSORT

psg: 0.76 gvh: 0.42 alm: 0.26 top: 0.17 tms: 0.20 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
20.0 %: plasma membrane
16.0 %: mitochondrial
8.0 %: extracellular, including cell wall
8.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic
4.0 %: vesicles of secretory system

>> prediction for CHR745 is end

5' end seq. ID CHR745F
5' end seq.
>CHR745F.Seq
ATTCGACTAATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGCTTTGGCCAATGC
AAATCATCAATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACA
ACAAAACTTTCCATTATTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGA
TGTACAAATTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAG
CGAAAGAAATGAAATTTTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGT
CATTAAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGT
AGCTATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATT
AATCCCAGCATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCT
TCAAACACTTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATGTCAAAATATTCAGA
TAATGTATTAAGAGTTATTACAGATGGTATCAAAGATGAATCACAAAATGTAAAATTAGC
AGGTATTCAAGCATTATGCTTTGCATTAGAATTTGTAAAGAAAAATTTTGATATNNNNNN
NNNN
Length of 5' end seq. 664
3' end seq. ID CHR745Z
3' end seq.
>CHR745Z.Seq
NNNNNNNNNNTCGCAAGTACCNTCAAAGAAACCATTAAACCATACGCTCAACAAATGTTG
GTCCTTTTATTCAACGTATTCAAGAATCAATCAATCATCATCTACGAAGAGGCTCTCCTT
GCCATTGGTGCCATCATCTTGGCTTTGGATGCTGATTTCGAACCTTACTTTTCAAATTTC
CTTCCAATCCTTGTAAACTTCCTCAAGAATGTCGATTTTGGTTCCGTAACAAACATTGCA
ATTGGTATCGTTGGTGATTTAGCTCGTGCTTTTGGTAAGAAATTCTCTGGTGTTTGCGCT
GAAATCGTTCCATTGATCGTTAGTGATCTCACCAATCCAAAACTCTCTATGAATGCTAAA
CCAAGTGCTATCAGTTGTCTCTGTGATATCGCCATTAGTGTTGGTGCCGATTTCATTCCT
TTCCTTCCAATGGTTATGCCAATTCTTCATCAAGCCTCTACCACTGAAATCGATGATGAA
GACTTTTTAAATGAACTCCGTGAAACTATCTTCCAAACTTACACTGGTATCATTCAAGGT
CTCAAGAGTGATAATCAAATCGAAGAACTCAATCAATACATCAATCCAATGTTAGACTTT
GTTGTACTTATAAATGATGATCCAGAACGTTATGATTCTGTTACTTCTGCTGCCTTGGCC
TTACTTGGTGATTTAGCTCAAGCTATGGGTGATAGTATTAGAAATCTTTTAAACAACAAA
ATAATTAGAGAATTTGTAAACAATGGTATTCAAAAAGGTATACCATATGCNCATTATGCN
ATTTATCAATTTTTCCAAAAAAACATAATTTCAAAAAGA
Length of 3' end seq. 819
Connected seq. ID CHR745P
Connected seq.
>CHR745P.Seq
ATTCGACTAATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGCTTTGGCCAATGC
AAATCATCAATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACA
ACAAAACTTTCCATTATTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGA
TGTACAAATTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAG
CGAAAGAAATGAAATTTTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGT
CATTAAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGT
AGCTATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATT
AATCCCAGCATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCT
TCAAACACTTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATGTCAAAATATTCAGA
TAATGTATTAAGAGTTATTACAGATGGTATCAAAGATGAATCACAAAATGTAAAATTAGC
AGGTATTCAAGCATTATGCTTTGCATTAGAATTTGTAAAGAAAAATTTTGATAT------
----TCGCAAGTACCNTCAAAGAAACCATTAAACCATACGCTCAACAAATGTTGGTCCTT
TTATTCAACGTATTCAAGAATCAATCAATCATCATCTACGAAGAGGCTCTCCTTGCCATT
GGTGCCATCATCTTGGCTTTGGATGCTGATTTCGAACCTTACTTTTCAAATTTCCTTCCA
ATCCTTGTAAACTTCCTCAAGAATGTCGATTTTGGTTCCGTAACAAACATTGCAATTGGT
ATCGTTGGTGATTTAGCTCGTGCTTTTGGTAAGAAATTCTCTGGTGTTTGCGCTGAAATC
GTTCCATTGATCGTTAGTGATCTCACCAATCCAAAACTCTCTATGAATGCTAAACCAAGT
GCTATCAGTTGTCTCTGTGATATCGCCATTAGTGTTGGTGCCGATTTCATTCCTTTCCTT
CCAATGGTTATGCCAATTCTTCATCAAGCCTCTACCACTGAAATCGATGATGAAGACTTT
TTAAATGAACTCCGTGAAACTATCTTCCAAACTTACACTGGTATCATTCAAGGTCTCAAG
AGTGATAATCAAATCGAAGAACTCAATCAATACATCAATCCAATGTTAGACTTTGTTGTA
CTTATAAATGATGATCCAGAACGTTATGATTCTGTTACTTCTGCTGCCTTGGCCTTACTT
GGTGATTTAGCTCAAGCTATGGGTGATAGTATTAGAAATCTTTTAAACAACAAAATAATT
AGAGAATTTGTAAACAATGGTATTCAAAAAGGTATACCATATGCNCATTATGCNATTTAT
CAATTTTTCCAAAAAAACATAATTTCAAAAAGA
Length of connected seq. 1463
Full length Seq ID -
Full length Seq. -
Length of full length seq. -