CHR728
Library CH
(Link to library)
Clone ID CHR728
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15687-1
Original site URL
Representative seq. ID CHR728P
(Link to Original site)
Representative DNA sequence
>CHR728 (CHR728Q) /CSM/CH/CHR7-B/CHR728Q.Seq.d/
AATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTC
AAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGC
AACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAG
AAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAA
TTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAA
TTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAG
AAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAAT
CATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTAT
CAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGA
TCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTG
TCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTACAC
AAAATACTGCTTXXXXXXXXXXTATTCATGCATTCTTAACCATGAAGAGAAAGATCCATT
CAAGACTGGTATCAAAGAATTTGGTAAATTCCTCGAGTTGAAACCATTGCGTTTCTTTGA
TCGTACCATTGATATCAAATCAAGAATCTCTCATTATTTGGATCAAACATTTTATAATCT
AAACACTGTAGCACTCTTTGATTGGAAAACCTATTCAGAGATGAGAAATATGGCATTCTA
CAAGTATGGTCTACAATTGTTGGAGGTTCATTTACCAGGTTCAACATTGGAGCAAGGTTT
GGATGTCTTAGAGATCATGAGAAATATTCATATCTTTGTATCACGTTATAACTATAATCT
TAATAATCAAATTTTCATTCAACGTTCATCAAATAGTAAAACATTAAACACCATCAATAT
CACACACATCTCAAATTCAATTCGTACTCATGGCTCTGGTATTATGAATACCACAATCAA
TTTCGCCTATAGATTCTTGGTTCAAAAGTTTTCCATCTTTTCAGAGTTTCTCTTTGATGA
TCAAATTAAATCAAAACTCTACAAGAATATCAAATACTTTAGAGAGAATAAAGAACAATT
GAATAATATGTACCCTTCAGAGTTGGTGACAGAGTTGGAAAGAGACATTAGACAATTGGG
TGTCTCCGAGACTGGTTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGG
TAATGCTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGC
TATCAAATTCGTACCAGACTNAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGAT
GCCCNCTCACC
sequence update 2002.10.25
Translated Amino Acid sequence
*ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKIE
EALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKE
TAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASI
YQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSIITQNTA---

---YSCILNHEEKDPFKTGIKEFGKFLELKPLRFFDRTIDIKSRISHYLDQTFYNLNTVA
LFDWKTYSEMRNMAFYKYGLQLLEVHLPGSTLEQGLDVLEIMRNIHIFVSRYNYNLNNQI
FIQRSSNSKTLNTINITHISNSIRTHGSGIMNTTINFAYRFLVQKFSIFSEFLFDDQIKS
KLYKNIKYFRENKEQLNNMYPSELVTELERDIRQLGVSETGLTFLDHFRLLITHIGNAMG
YIRLVRSGGLHYCSNAIKFVPDXKRFQNSKI*pqkmpxh


Translated Amino Acid sequence (All Frames)
Frame A:
nkkrttqfrkwphpirlimvkmknihlmhlkmvhlnwlesnn*lnlinlqlimhnkfgr*
kkh*mkh*mkygi*i*iqfqfiinlmnn*i*lnwlkliikfsik*y*yslqfviklef*k
kqqkvnfihh*qylerlqvnhqkvmyklklvnyyhl*liyqhl*idvih*leillvnlhr
sinhkriyihnslrmfiyklsiiq*liyfqy**i*iv*lhkill---

---YSCILNHEEKDPFKTGIKEFGKFLELKPLRFFDRTIDIKSRISHYLDQTFYNLNTVA
LFDWKTYSEMRNMAFYKYGLQLLEVHLPGSTLEQGLDVLEIMRNIHIFVSRYNYNLNNQI
FIQRSSNSKTLNTINITHISNSIRTHGSGIMNTTINFAYRFLVQKFSIFSEFLFDDQIKS
KLYKNIKYFRENKEQLNNMYPSELVTELERDIRQLGVSETGLTFLDHFRLLITHIGNAMG
YIRLVRSGGLHYCSNAIKFVPDXKRFQNSKI*pqkmpxh

Frame B:
ikneqpnlenghilfg**wsk*riyi*ci*rwfi*igwratin*t*sics*lcttnledr
rsir*nik*smgykyrssfnl**ts*tirfn*ig*n*s*nfq*snisilfnl*sn*nfkr
nsrk*ilftinsiwrdyr*iirr*ctn*sw*iitiyd*fisick*mlfin*kyy*sicid
lsitkeytytil*ecsftscllfnd*yifsinkfr*ynytkyc---

---ihafltmkrkihsrlvsknlvnsss*nhcvslivplisnqesliiwikhfii*tl*h
sligkpiqr*eiwhstsmvyncwrfiyqvqhwskvwms*rs*eifislyhvitiiliikf
sfnvhqivkh*tpsishtsqiqfvlmalvl*ipqsispidswfksfpsfqsfslmiklnq
nstrisntleriknn*iictlqsw*qswketldnwvsprlv*pf*iildf*slilvmlwv
ildwsdpvvytivvmlsnsyqtxkdskiprfnlkrcplt

Frame C:
*ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKIE
EALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKE
TAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASI
YQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSIITQNTA---

---fmhs*p*rersiqdwyqriw*iprvetiafl*syh*yqiknlslfgsnil*skhcst
l*lenlfrdekygilqvwstivggsftrfnigarfgclrdhekysylcitl*l*s**snf
hstfik**nikhhqyhthlkfnsyswlwyyeyhnqfrl*ilgskvfhlfrvsl**sn*ik
tlqeyqil*re*rtie*yvpfrvgdrvgkrh*tigclrdwfnlfrsf*tfnhsyw*cygl
y*igqirwftll**cyqirtrlkkipkfqdltskdaxs

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR728 (CHR728Q) /CSM/CH/CHR7-B/CHR728Q.Seq.d/ 2924 0.0
VHQ112 (VHQ112Q) /CSM/VH/VHQ1-A/VHQ112Q.Seq.d/ 1332 0.0
VHP507 (VHP507Q) /CSM/VH/VHP5-A/VHP507Q.Seq.d/ 1332 0.0
VHA138 (VHA138Q) /CSM/VH/VHA1-B/VHA138Q.Seq.d/ 1332 0.0
SHK609 (SHK609Q) /CSM/SH/SHK6-A/SHK609Q.Seq.d/ 1332 0.0
SHE452 (SHE452Q) /CSM/SH/SHE4-C/SHE452Q.Seq.d/ 1332 0.0
SHD353 (SHD353Q) /CSM/SH/SHD3-C/SHD353Q.Seq.d/ 1332 0.0
SHC138 (SHC138Q) /CSM/SH/SHC1-B/SHC138Q.Seq.d/ 1332 0.0
SHB243 (SHB243Q) /CSM/SH/SHB2-B/SHB243Q.Seq.d/ 1332 0.0
CHO318 (CHO318Q) /CSM/CH/CHO3-A/CHO318Q.Seq.d/ 1332 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CD253289|CD253289.1 AGENCOURT_14214418 NICHD_XGC_Eye1 Xenopus laevis cDNA cloneIMAGE:6946547 5', mRNA sequence. 42 2e-08 3
AJ663047|AJ663047.1 Sus scrofa EST, clone C0000024_A04. 66 2e-06 1
CO738501|CO738501.1 SlLE04c20k11f1 squirrel embryo library 1 Spermophilus lateralis cDNA clone 20k11 5', mRNA sequence. 38 5e-05 3
BU746238|BU746238.1 CH3#002_G11T3 Canine heart normalized cDNA Library in pBluescript Canis familiaris cDNA clone CH3#002_G11 3', mRNA sequence. 38 3e-04 3
AC168241|AC168241.1 Bos taurus clone CH240-197K22, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces. 52 0.035 1
CR103667|CR103667.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP142o16. 50 0.14 1
CR023465|CR023465.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP421e10. 50 0.14 1
CR044130|CR044130.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP186g09. 50 0.14 1
CR017539|CR017539.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19. 50 0.14 1
CR034434|CR034434.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19. 50 0.14 1
dna update 2005.11.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54R74) RecName: Full=UPF0681 protein; 478 e-137
BC110850_1(BC110850|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 315 3e-84
AX882617_1(AX882617|pid:none) Sequence 17522 from Patent EP10746... 315 3e-84
AB028956_1(AB028956|pid:none) Homo sapiens mRNA for KIAA1033 pro... 315 3e-84
BC143373_1(BC143373|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 315 3e-84
BC020314_1(BC020314|pid:none) Mus musculus RIKEN cDNA A230046K03... 313 1e-83
(Q3UMB9) RecName: Full=UPF0681 protein KIAA1033; 313 1e-83
AK145000_1(AK145000|pid:none) Mus musculus mammary gland RCB-052... 313 1e-83
CP000600_221(CP000600|pid:none) Ostreococcus lucimarinus CCE9901... 254 7e-66
AY371725_1(AY371725|pid:none) Tetrahymena thermophila macronucle... 222 3e-56
protein update 2009. 4.13
PSORT

psg: 0.79 gvh: 0.25 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: cytoskeletal
12.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for CHR728 is cyt

5' end seq. ID CHR728F
5' end seq.
>CHR728F.Seq
AATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTC
AAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGC
AACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAG
AAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAA
TTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAA
TTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAG
AAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAAT
CATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTAT
CAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGA
TCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTG
TCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTACAC
AAAATACTGCTTNNNNNNNNNN
Length of 5' end seq. 682
3' end seq. ID CHR728Z
3' end seq.
>CHR728Z.Seq
NNNNNNNNNNTATTCATGCATTCTTAACCATGAAGAGAAAGATCCATTCAAGACTGGTAT
CAAAGAATTTGGTAAATTCCTCGAGTTGAAACCATTGCGTTTCTTTGATCGTACCATTGA
TATCAAATCAAGAATCTCTCATTATTTGGATCAAACATTTTATAATCTAAACACTGTAGC
ACTCTTTGATTGGAAAACCTATTCAGAGATGAGAAATATGGCATTCTACAAGTATGGTCT
ACAATTGTTGGAGGTTCATTTACCAGGTTCAACATTGGAGCAAGGTTTGGATGTCTTAGA
GATCATGAGAAATATTCATATCTTTGTATCACGTTATAACTATAATCTTAATAATCAAAT
TTTCATTCAACGTTCATCAAATAGTAAAACATTAAACACCATCAATATCACACACATCTC
AAATTCAATTCGTACTCATGGCTCTGGTATTATGAATACCACAATCAATTTCGCCTATAG
ATTCTTGGTTCAAAAGTTTTCCATCTTTTCAGAGTTTCTCTTTGATGATCAAATTAAATC
AAAACTCTACAAGAATATCAAATACTTTAGAGAGAATAAAGAACAATTGAATAATATGTA
CCCTTCAGAGTTGGTGACAGAGTTGGAAAGAGACATTAGACAATTGGGTGTCTCCGAGAC
TGGTTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGG
TTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGT
ACCAGACTNAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCNCTCACC
Length of 3' end seq. 839
Connected seq. ID CHR728P
Connected seq.
>CHR728P.Seq
AATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTC
AAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGC
AACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAG
AAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAA
TTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAA
TTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAG
AAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAAT
CATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTAT
CAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGA
TCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTG
TCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTACAC
AAAATACTGCTT----------TATTCATGCATTCTTAACCATGAAGAGAAAGATCCATT
CAAGACTGGTATCAAAGAATTTGGTAAATTCCTCGAGTTGAAACCATTGCGTTTCTTTGA
TCGTACCATTGATATCAAATCAAGAATCTCTCATTATTTGGATCAAACATTTTATAATCT
AAACACTGTAGCACTCTTTGATTGGAAAACCTATTCAGAGATGAGAAATATGGCATTCTA
CAAGTATGGTCTACAATTGTTGGAGGTTCATTTACCAGGTTCAACATTGGAGCAAGGTTT
GGATGTCTTAGAGATCATGAGAAATATTCATATCTTTGTATCACGTTATAACTATAATCT
TAATAATCAAATTTTCATTCAACGTTCATCAAATAGTAAAACATTAAACACCATCAATAT
CACACACATCTCAAATTCAATTCGTACTCATGGCTCTGGTATTATGAATACCACAATCAA
TTTCGCCTATAGATTCTTGGTTCAAAAGTTTTCCATCTTTTCAGAGTTTCTCTTTGATGA
TCAAATTAAATCAAAACTCTACAAGAATATCAAATACTTTAGAGAGAATAAAGAACAATT
GAATAATATGTACCCTTCAGAGTTGGTGACAGAGTTGGAAAGAGACATTAGACAATTGGG
TGTCTCCGAGACTGGTTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGG
TAATGCTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGC
TATCAAATTCGTACCAGACTNAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGAT
GCCCNCTCACC
Length of connected seq. 1501
Full length Seq ID -
Full length Seq. -
Length of full length seq. -