CHR719 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHR719
Library	CH (Link to library)
Clone ID	CHR719 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15548-1\|Contig-U15723-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHR7-A/CHR719Q.Seq.d/
Representative seq. ID	CHR719P (Link to Original site)
Representative DNA sequence	>CHR719 (CHR719Q) /CSM/CH/CHR7-A/CHR719Q.Seq.d/ ATTTTTTTCTACAACTTAGAAAATATTGGAGTTTTAAAAATAAATAAAATATAACATAAT TAATATAAAATAAAATATAAAATAAAATAAAATAAAATAAAATAATTTAATAAAACAAAA TTTAAAATTATTATTAATATAGAATTTATACAAAATAAATAAATAGATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT AAATAAATATAAAGAAGAAAGGGAAAAAAAAAAXXXXXXXXXXGGTTCAGCCAGATAANG TAGTCNNTAGTANAATGAATTTAGATAATGNNGNTATGGTNTTCGCTCNTTCTTTNTTAA GATGTNATAGTCAAGATATGATTTTAGCNAATGTAGATAGAGAGANNNCTTTAGTTNAAT TAATAATTGAAGGTTATTTANAATTATNTGATGTTTGTCCAATACAATTGGATGATATTG ATTCAAAAATTCAAATTCCATCATTTAGTAATAATAATAATAATTNTNCANCANCAANTA CAACAACTACAACTACAACAGTACCATCATCAACTTCAACAAATATAACAACTAATGGTG CCTCGGCACTAGGTGCTGAAAGTTCAACAACACT
sequence update	2002.10.25
Translated Amino Acid sequence	ffsttkilefkikyniinikniknkiknnlikqnlklllinlykinkinki nkinkinkinkinkINKYKEEREKK--- ---VQPDXVVXSXMNLDNXXMVFAXSXLRCXSQDMILANVDREXXLVXLIIEGYLXLXDV CPIQLDDIDSKIQIPSFSNNNNNXXXXXTTTTTTTVPSSTSTNITTNGASALGAESSTT
Translated Amino Acid sequence (All Frames)	Frame A: iffynlenigvlkinkihnykikykiknkikfnktkfkiiiniefiqnkidkin kinkinkinkinkinkirrkgkkk--- ---gsarxsxxnefrxxygxrsffxkmxsrydfsxcrrxxfsxinnrlfxixc lsntigyfknsnsii*****xxxxxynnynynstiinfnkynnwclgtrckfnnt Frame B: ffsttkilefkikyniinikniknkiknnlikqnlklllinlykinkinki nkinkinkinkinkINKYKEEREKK--- ---VQPDXVVXSXMNLDNXXMVFAXSXLRCXSQDMILANVDREXXLVXLIIEGYLXLXDV CPIQLDDIDSKIQIPSFSNNNNNXXXXXTTTTTTTVPSSTSTNITTNGASALGAESSTT Frame C: fflqlrkywsfknknitlinkinkiknkii*nkinyyyriytkinrink inkinkinkinkinkinikkkgkkk--- ---fsqixsxvxiimxxwxslxlxdvivkifxmierxlxnlkvixnyxmf vqynwmiliqkfkfhhlviiiiixxxqxqqlqlqqyhhqlqqiqlmvprh*vlkvqqh
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHR719 (CHR719Q) /CSM/CH/CHR7-A/CHR719Q.Seq.d/ 373 e-102 SHE312 (SHE312Q) /CSM/SH/SHE3-A/SHE312Q.Seq.d/ 281 6e-75 AHJ636 (AHJ636Q) /CSM/AH/AHJ6-B/AHJ636Q.Seq.d/ 242 5e-63 SFC181 (SFC181Q) /CSM/SF/SFC1-D/SFC181Q.Seq.d/ 82 1e-14 AHF576 (AHF576Q) /CSM/AH/AHF5-D/AHF576Q.Seq.d/ 82 1e-14 VSI730 (VSI730Q) /CSM/VS/VSI7-B/VSI730Q.Seq.d/ 54 3e-06 VSC414 (VSC414Q) /CSM/VS/VSC4-A/VSC414Q.Seq.d/ 54 3e-06 VSB743 (VSB743Q) /CSM/VS/VSB7-B/VSB743Q.Seq.d/ 42 0.010 SSA762 (SSA762Q) /CSM/SS/SSA7-C/SSA762Q.Seq.d/ 42 0.010 SLE841 (SLE841Q) /CSM/SL/SLE8-B/SLE841Q.Seq.d/ 42 0.010
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC115599\|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 54 0.001 2 CT030717\|CT030717.5 Zebrafish DNA sequence * SEQUENCING IN PROGRESS * from clone CH211-154P6. 48 0.22 1 AL929544\|AL929544.7 Zebrafish DNA sequence from clone CH211-227O19. 48 0.22 1 AC157249\|AC157249.2 Dasypus novemcinctus clone VMRC5-110M7, WORKING DRAFT SEQUENCE. 40 0.40 3 DN619654\|DN619654.1 UCRCS11_04D15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0004D15, mRNA sequence. 46 0.88 1 CX668155\|CX668155.1 UCRCP01_035_H12_T3 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Poncirus trifoliata cDNA clone UCRCP01_035_T3_H12, mRNA sequence. 46 0.88 1 AC153745\|AC153745.3 Ornithorhynchus anatinus clone OA_Bb-450E7, WORKING DRAFT SEQUENCE, 7 unordered pieces. 46 0.88 1 CT025882\|CT025882.2 Zebrafish DNA sequence * SEQUENCING IN PROGRESS * from clone DKEY-174K15. 46 0.88 1 CR392360\|CR392360.2 Zebrafish DNA sequence * SEQUENCING IN PROGRESS * from clone CH211-191G17. 46 0.88 1 CR392031\|CR392031.5 Zebrafish DNA sequence * SEQUENCING IN PROGRESS * from clone CH211-117G9. 46 0.88 1
dna update	2005.11.21
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AL844504_88(AL844504\|pid:none) Plasmodium falciparum strain 3D7,... 27 4.2 BC013071_1(BC013071\|pid:none) Homo sapiens KIAA1688 protein, mRN... 33 4.9 AK092501_1(AK092501\|pid:none) Homo sapiens cDNA FLJ35182 fis, cl... 33 4.9 BC060637_1(BC060637\|pid:none) Mus musculus DNA segment, Chr 15, ... 33 4.9 (Q9C0H5) RecName: Full=Uncharacterized protein KIAA1688; &AB384... 33 4.9 AK296353_1(AK296353\|pid:none) Homo sapiens cDNA FLJ61300 complet... 33 4.9 BC060065_1(BC060065\|pid:none) Mus musculus DNA segment, Chr 15, ... 33 4.9 AK035479_1(AK035479\|pid:none) Mus musculus adult male urinary bl... 33 4.9 AE014297_3038(AE014297\|pid:none) Drosophila melanogaster chromos... 33 4.9 BT003438_1(BT003438\|pid:none) Drosophila melanogaster SD01504 fu... 33 4.9
protein update	2009. 4.13
PSORT	psg: 0.70 gvh: 0.60 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: cytoplasmic 28.0 %: nuclear 12.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: Golgi >> prediction for CHR719 is cyt
5' end seq. ID	CHR719F
5' end seq.	>CHR719F.Seq ATTTTTTTCTACAACTTAGAAAATATTGGAGTTTTAAAAATAAATAAAATATAACATAAT TAATATAAAATAAAATATAAAATAAAATAAAATAAAATAAAATAATTTAATAAAACAAAA TTTAAAATTATTATTAATATAGAATTTATACAAAATAAATAAATAGATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT AAATAAATATAAAGAAGAAAGGGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq.	283
3' end seq. ID	CHR719Z
3' end seq.	>CHR719Z.Seq NNNNNNNNNNGGTTCAGCCAGATAANGTAGTCNNTAGTANAATGAATTTAGATAATGNNG NTATGGTNTTCGCTCNTTCTTTNTTAAGATGTNATAGTCAAGATATGATTTTAGCNAATG TAGATAGAGAGANNNCTTTAGTTNAATTAATAATTGAAGGTTATTTANAATTATNTGATG TTTGTCCAATACAATTGGATGATATTGATTCAAAAATTCAAATTCCATCATTTAGTAATA ATAATAATAATTNTNCANCANCAANTACAACAACTACAACTACAACAGTACCATCATCAA CTTCAACAAATATAACAACTAATGGTGCCTCGGCACTAGGTGCTGAAAGTTCAACAACAC T
Length of 3' end seq.	361
Connected seq. ID	CHR719P
Connected seq.	>CHR719P.Seq ATTTTTTTCTACAACTTAGAAAATATTGGAGTTTTAAAAATAAATAAAATATAACATAAT TAATATAAAATAAAATATAAAATAAAATAAAATAAAATAAAATAATTTAATAAAACAAAA TTTAAAATTATTATTAATATAGAATTTATACAAAATAAATAAATAGATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT AAATAAATATAAAGAAGAAAGGGAAAAAAAAAA----------GGTTCAGCCAGATAANG TAGTCNNTAGTANAATGAATTTAGATAATGNNGNTATGGTNTTCGCTCNTTCTTTNTTAA GATGTNATAGTCAAGATATGATTTTAGCNAATGTAGATAGAGAGANNNCTTTAGTTNAAT TAATAATTGAAGGTTATTTANAATTATNTGATGTTTGTCCAATACAATTGGATGATATTG ATTCAAAAATTCAAATTCCATCATTTAGTAATAATAATAATAATTNTNCANCANCAANTA CAACAACTACAACTACAACAGTACCATCATCAACTTCAACAAATATAACAACTAATGGTG CCTCGGCACTAGGTGCTGAAAGTTCAACAACACT
Length of connected seq.	624
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas