>CHR716 (CHR716Q) /CSM/CH/CHR7-A/CHR716Q.Seq.d/
TGAATTTAGATGATAAATCAAATTATTTTTATGATAATCAAGAATTTTTCCCAATTGATG
GAAGAGGATTTGATGTAGATCAACAATTCCGTAACTATTATGATGATGAAAGTAAAGCAA
ATCCAAAACCATATCATAATTATCACTTCTGTGCCAAAATTACCAATAGTCGTTTCACAT
ACAAAGGTTTTGAAACATTTAGATTCGTAGGTGATGATGATGTTTGGGTATTCATTGATA
GAAAGTTGGTTGTAGATTTGGGTGGTTTACATATTGCTCAAGAGAAAACTATTGATCTTA
CTAAACTTGGTCTTGTTGTTAATAAACTCTATGTAATTGATTTCTTCTATTGTGAAAGAC
ATACTTCAAGATCAACAATTCGTATTGAAACAACAATTGAACTTCAATGTCCATGGTATG
ATTTCTGTGGTGTATGTACTGGTAATGGTTTAAGTTGTTGTAATGTTACAAGAGATTGTG
ATGATGGTAATCCATGTACAATTGATCTCTGTCCAGAGCCAACCGCTGTATTTGATCTAA
AAGATATTTCAGCAAATTGTCGTCATCAAGATAGAACACCAACTGACTGGAGTGTTACTG
ATAAATGTAATACTGGTAAATGTAATGTTTCAACTGGTATCTTTGTAAXXXXXXXXXXTN
AAAAAGGGACTTGNGAGTTTGNTGATTTNGATCCNAAACCNTTNNTTTGNAAAACTGNTG
CTGNTGTTTCANTTGGNGNTGCTGTTGGNGNTGCTGTTGGNGGGGCNANTGCNCTTGGGG
TNTTTANTTTTGGTGGNAAAAAAGGTTNTGNCTACTGGAAANCAAGTCAAGGNGNTNCNA
NGGCCNCNTNAAANGCCNATCCCCTTTANGAAANCNATCCNTCAGGNGGNGAAAANNCNA
TTTNTNCTAGCCCCNAT

NLDDKSNYFYDNQEFFPIDGRGFDVDQQFRNYYDDESKANPKPYHNYHFCAKITNSRFTY
KGFETFRFVGDDDVWVFIDRKLVVDLGGLHIAQEKTIDLTKLGLVVNKLYVIDFFYCERH
TSRSTIRIETTIELQCPWYDFCGVCTGNGLSCCNVTRDCDDGNPCTIDLCPEPTAVFDLK
DISANCRHQDRTPTDWSVTDKCNTGKCNVSTGIFV---

---XKGTXEFXDXDPKPXXXKTXAXVSXGXAVGXAVGGAXALGVFXFGGKKGXXYWKXSQ
GXXXAXXXAXPLXEXXPSGGEXXIXXSPX

Frame A:
*i*minqiifmiiknfsqlmeedlm*innsvtimmmkvkqiqnhiiiitsvpklpivvsh
tkvlkhlds*vmmmfgyslieswl*iwvvyillkrkllillnlvlllinsm*lissivkd
ilqdqqfvlkqqlnfnvhgmisvvyvlvmv*vvvmlqeivmmvihvqlisvqsqplyli*
kifqqivvikiehqltgvllinvilvnvmfqlvsl*---

---xkrdlxvx*fxsxtxxlxnxcxcfxwxccwxccwxgxcxwgxxfwwxkrxxllexks
rxxxgxxkxxsplxxxsxrxxkxxxx*px

Frame B:
efr**iklfl**srifpn*wkri*crstip*ll***k*sksktis*lsllcqnyq*sfhi
qrf*ni*irr***clgih**kvgcrfgwftycsreny*sy*twscc**tlcn*flll*kt
yfkinnsy*nnn*tsmsmv*flwcmyw*wfkll*cykrl**w*smyn*slsranrci*sk
ryfsklsssr*ntn*lecy**m*yw*m*cfnwylc---

---XKGTXEFXDXDPKPXXXKTXAXVSXGXAVGXAVGGAXALGVFXFGGKKGXXYWKXSQ
GXXXAXXXAXPLXEXXPSGGEXXIXXSPX

Frame C:
NLDDKSNYFYDNQEFFPIDGRGFDVDQQFRNYYDDESKANPKPYHNYHFCAKITNSRFTY
KGFETFRFVGDDDVWVFIDRKLVVDLGGLHIAQEKTIDLTKLGLVVNKLYVIDFFYCERH
TSRSTIRIETTIELQCPWYDFCGVCTGNGLSCCNVTRDCDDGNPCTIDLCPEPTAVFDLK
DISANCRHQDRTPTDWSVTDKCNTGKCNVSTGIFV---

---kkglxslxixixnxxfxklxlxfxlxxllxxllxgxxxlgxlxlvxkkvxxtgxqvk
xxxxpxxxpipfxkxixqxxkxxfxlap

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR716 (CHR716Q) /CSM/CH/CHR7-A/CHR716Q.Seq.d/                       1473   0.0
AHL796 (AHL796Q) /CSM/AH/AHL7-D/AHL796Q.Seq.d/                       1285   0.0
AHM296 (AHM296Q) /CSM/AH/AHM2-D/AHM296Q.Seq.d/                       1261   0.0
AFI113 (AFI113Q) /CSM/AF/AFI1-A/AFI113Q.Seq.d/                       1203   0.0
AFJ749 (AFJ749Q) /CSM/AF/AFJ7-C/AFJ749Q.Seq.d/                       1170   0.0
SFK347 (SFK347Q) /CSM/SF/SFK3-B/SFK347Q.Seq.d/                       1166   0.0
AFM807 (AFM807Q) /CSM/AF/AFM8-A/AFM807Q.Seq.d/                       1158   0.0
AFN758 (AFN758Q) /CSM/AF/AFN7-C/AFN758Q.Seq.d/                       1098   0.0
SFG457 (SFG457Q) /CSM/SF/SFG4-C/SFG457Q.Seq.d/                       1094   0.0
SFK324 (SFK324Q) /CSM/SF/SFK3-A/SFK324Q.Seq.d/                       1074   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB053203|AB053203.1 Dictyostelium discoideum psiA mRNA for Psi facor, complete cds.    88   4e-30  7
U67940|U67940.1 Dictyostelium discoideum ORFveg106 mRNA, complete cds.    80   4e-24  5
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    76   1e-14  6
AJ548837|AJ548837.1 Dictyostelium discoideum mRNA for extracellular signalling molecule  DicA (dicA gene).    48   4e-07  4
AJ548838|AJ548838.1 Dictyostelium discoideum dicA gene for extracellular signalling  molecule DicA, exons 1-2.    48   7e-07  4
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    46   0.16   9
CD462718|CD462718.1 ETH1_39_F07.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_39_F07_A002 5', mRNA sequence.    46   1.3    1
BE163982|BE163982.1 QV2-HT0463-150200-048-e12 HT0463 Homo sapiens cDNA, mRNA sequence.    46   1.3    1
Z19555|Z19555.1 Caenorhabditis elegans Cosmid F02A9.               44   1.7    2
AC150246|AC150246.1 Medicago truncatula chromosome 2 clone mth2-4c5, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.    38   3.2    4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   217   5e-55
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   216   6e-55
(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell...   210   4e-53
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   207   3e-52
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                190   5e-47
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                171   4e-41
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                151   3e-35
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                150   7e-35
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                145   2e-33
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                142   1e-32

 psg: 0.75  gvh: 0.22  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for CHR716 is nuc

>CHR716F.Seq
TGAATTTAGATGATAAATCAAATTATTTTTATGATAATCAAGAATTTTTCCCAATTGATG
GAAGAGGATTTGATGTAGATCAACAATTCCGTAACTATTATGATGATGAAAGTAAAGCAA
ATCCAAAACCATATCATAATTATCACTTCTGTGCCAAAATTACCAATAGTCGTTTCACAT
ACAAAGGTTTTGAAACATTTAGATTCGTAGGTGATGATGATGTTTGGGTATTCATTGATA
GAAAGTTGGTTGTAGATTTGGGTGGTTTACATATTGCTCAAGAGAAAACTATTGATCTTA
CTAAACTTGGTCTTGTTGTTAATAAACTCTATGTAATTGATTTCTTCTATTGTGAAAGAC
ATACTTCAAGATCAACAATTCGTATTGAAACAACAATTGAACTTCAATGTCCATGGTATG
ATTTCTGTGGTGTATGTACTGGTAATGGTTTAAGTTGTTGTAATGTTACAAGAGATTGTG
ATGATGGTAATCCATGTACAATTGATCTCTGTCCAGAGCCAACCGCTGTATTTGATCTAA
AAGATATTTCAGCAAATTGTCGTCATCAAGATAGAACACCAACTGACTGGAGTGTTACTG
ATAAATGTAATACTGGTAAATGTAATGTTTCAACTGGTATCTTTGTAANNNNNNNNNN

>CHR716Z.Seq
NNNNNNNNNNTNAAAAAGGGACTTGNGAGTTTGNTGATTTNGATCCNAAACCNTTNNTTT
GNAAAACTGNTGCTGNTGTTTCANTTGGNGNTGCTGTTGGNGNTGCTGTTGGNGGGGCNA
NTGCNCTTGGGGTNTTTANTTTTGGTGGNAAAAAAGGTTNTGNCTACTGGAAANCAAGTC
AAGGNGNTNCNANGGCCNCNTNAAANGCCNATCCCCTTTANGAAANCNATCCNTCAGGNG
GNGAAAANNCNATTTNTNCTAGCCCCNAT

>CHR716P.Seq
TGAATTTAGATGATAAATCAAATTATTTTTATGATAATCAAGAATTTTTCCCAATTGATG
GAAGAGGATTTGATGTAGATCAACAATTCCGTAACTATTATGATGATGAAAGTAAAGCAA
ATCCAAAACCATATCATAATTATCACTTCTGTGCCAAAATTACCAATAGTCGTTTCACAT
ACAAAGGTTTTGAAACATTTAGATTCGTAGGTGATGATGATGTTTGGGTATTCATTGATA
GAAAGTTGGTTGTAGATTTGGGTGGTTTACATATTGCTCAAGAGAAAACTATTGATCTTA
CTAAACTTGGTCTTGTTGTTAATAAACTCTATGTAATTGATTTCTTCTATTGTGAAAGAC
ATACTTCAAGATCAACAATTCGTATTGAAACAACAATTGAACTTCAATGTCCATGGTATG
ATTTCTGTGGTGTATGTACTGGTAATGGTTTAAGTTGTTGTAATGTTACAAGAGATTGTG
ATGATGGTAATCCATGTACAATTGATCTCTGTCCAGAGCCAACCGCTGTATTTGATCTAA
AAGATATTTCAGCAAATTGTCGTCATCAAGATAGAACACCAACTGACTGGAGTGTTACTG
ATAAATGTAATACTGGTAAATGTAATGTTTCAACTGGTATCTTTGTAA----------TN
AAAAAGGGACTTGNGAGTTTGNTGATTTNGATCCNAAACCNTTNNTTTGNAAAACTGNTG
CTGNTGTTTCANTTGGNGNTGCTGTTGGNGNTGCTGTTGGNGGGGCNANTGCNCTTGGGG
TNTTTANTTTTGGTGGNAAAAAAGGTTNTGNCTACTGGAAANCAAGTCAAGGNGNTNCNA
NGGCCNCNTNAAANGCCNATCCCCTTTANGAAANCNATCCNTCAGGNGGNGAAAANNCNA
TTTNTNCTAGCCCCNAT