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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR688
Library CH
(Link to library)
Clone ID CHR688
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHR688P
(Link to Original site)
Representative DNA sequence 
>CHR688 (CHR688Q) /CSM/CH/CHR6-D/CHR688Q.Seq.d/
CAAAAAACNTTTCAAAANATATTGGAATTGATAATAATTTAAAATTAACCNCTTTGGTTG
GTTTGATTGAAATTGATGATTCATCAATTTATTCAAAACTNTTXXXXXXXXXXACTATAA
ATTGTTTGGATTTGAAAGATTGTTATGCGATGAACAATACATTGTATTGCAAAGAGTGTA
AATTCAATTGTCATTATTCAAAACATATGCATATCACATATGAAACATTTTTAATTAAAA
AGGAAATGGAAAACGAAGATGTTAAAAAACAAATTGAAGAAGGAATTGATGCAACATCTT
TGAAAAGACAATGGGTTGAATCCTTAGAGAAAGAAATTAAGGAAAATACTGATGAGAAAA
ATGAAATACTTAAAATTAGCTCACAACTTTCATACTTTTTAAAAGAAAATTGCATTACAA
CATACCATGATACAGTCATTGAATATTTGAAAATTTGTATTGAAAATGAAGAACTCAAAT
CAGATAAATCAGGTAAAAAATCAATGGAAGATAATTTAAAGTTTTTCCAAGATCAACATG
ATTATTTTCAAAAAAATCTTTCCAACCAACAAATCCAAAAAATCACAACAAAAGATGTCC
CAATTCTCATTGAAAAATTAAAAAACCTCAAAGAAAATGGTAAAACACTTAGAGAATGCA
TCGAAGCTAATGTAAATGAACAATTAAAAACAGGCTTCAATCCAATTGTTGTCACAAAAA
ATACAAATCATTCAAAAGAATGGGGTTTTATTTCTCAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
KNXSKXIGIDNNLKLTXLVGLIEIDDSSIYSKL---

---TINCLDLKDCYAMNNTLYCKECKFNCHYSKHMHITYETFLIKKEMENEDVKKQIEEG
IDATSLKRQWVESLEKEIKENTDEKNEILKISSQLSYFLKENCITTYHDTVIEYLKICIE
NEELKSDKSGKKSMEDNLKFFQDQHDYFQKNLSNQQIQKITTKDVPILIEKLKNLKENGK
TLRECIEANVNEQLKTGFNPIVVTKNTNHSKEWGFISQ
Translated Amino Acid sequence (All Frames) 
Frame A:
qktfqxileliii*n*plwlv*lklmihqfiqnx---

---TINCLDLKDCYAMNNTLYCKECKFNCHYSKHMHITYETFLIKKEMENEDVKKQIEEG
IDATSLKRQWVESLEKEIKENTDEKNEILKISSQLSYFLKENCITTYHDTVIEYLKICIE
NEELKSDKSGKKSMEDNLKFFQDQHDYFQKNLSNQQIQKITTKDVPILIEKLKNLKENGK
TLRECIEANVNEQLKTGFNPIVVTKNTNHSKEWGFISQ

Frame B:
kkxfkxywn***fkinxfgwfd*n**finlfktx---

---l*ivwi*kivmr*tihciaksvnsiviiqnicishmkhf*lkrkwktkmlknklkke
lmqhl*kdnglnp*rkklrkilmrkmkylklahnfhtf*kkialqhtmiqslni*kfvlk
mknsnqinqvknqwkii*sfskinmiifkkifptnkskksqqkmsqfslkn*ktskkmvk
hlenasklm*mnn*kqasiqllsqkiqiiqkngvlfln

Frame C:
KNXSKXIGIDNNLKLTXLVGLIEIDDSSIYSKL---

---yklfgferllcdeqyivlqrv*iqlslfktyayhi*nifn*kgngkrrc*ktn*rrn
*cnifektmg*ilrern*gky**ek*nt*n*lttfilfkrklhynip*ysh*ifenly*k
*rtqir*ir*kingr*fkvfprst*lfskksfqptnpknhnkrcpnsh*kikkpqrkw*n
t*rmhrs*ck*tiknrlqsncchkkyksfkrmgfyfs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR688 (CHR688Q) /CSM/CH/CHR6-D/CHR688Q.Seq.d/                       1086   0.0
SHL413 (SHL413Q) /CSM/SH/SHL4-A/SHL413Q.Seq.d/                        946   0.0
SHK833 (SHK833Q) /CSM/SH/SHK8-B/SHK833Q.Seq.d/                        946   0.0
SHK526 (SHK526Q) /CSM/SH/SHK5-B/SHK526Q.Seq.d/                        946   0.0
SHG132 (SHG132Q) /CSM/SH/SHG1-B/SHG132Q.Seq.d/                        946   0.0
SHE336 (SHE336Q) /CSM/SH/SHE3-B/SHE336Q.Seq.d/                        946   0.0
SHD616 (SHD616Q) /CSM/SH/SHD6-A/SHD616Q.Seq.d/                        946   0.0
SHD411 (SHD411Q) /CSM/SH/SHD4-A/SHD411Q.Seq.d/                        946   0.0
SHD294 (SHD294Q) /CSM/SH/SHD2-D/SHD294Q.Seq.d/                        946   0.0
SHD230 (SHD230Q) /CSM/SH/SHD2-B/SHD230Q.Seq.d/                        946   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BA000021|BA000021.3 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome.    32   3e-05  18
AC114012|AC114012.5 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, complete sequence.    40   0.002  8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   0.050  16
AC118161|AC118161.6 Rattus norvegicus clone CH230-296C3, WORKING DRAFT SEQUENCE, 1 ordered piece.    40   0.065  5
AL353584|AL353584.11 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP13-185F3.    34   0.11   8
AC094679|AC094679.5 Rattus norvegicus clone CH230-5G10, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44   0.14   4
AW013744|AW013744.1 BSBmMFSZ22G10SK Brugia malayi microfilaria cDNA (SAW94LS-BmMf) Brugia malayi cDNA clone BSBmMFSZ22G10 5', mRNA sequence.    48   0.27   1
AL897247|AL897247.2 Xenopus tropicalis EST, clone TEgg013f13 3'.    48   0.27   1
AC120281|AC120281.5 Rattus norvegicus clone CH230-438L23, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   0.27   1
AC111204|AC111204.5 Rattus norvegicus clone CH230-31G2, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    48   0.27   1
dna update 2005.11.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC114263_3(AC114263|pid:none) Dictyostelium discoideum chromosom...    66   1e-09
BC152666_1(BC152666|pid:none) Danio rerio hypothetical LOC554469...    47   8e-04
CP000025_577(CP000025|pid:none) Campylobacter jejuni RM1221, com...    46   0.001
BC155593_1(BC155593|pid:none) Danio rerio zgc:172065, mRNA (cDNA...    44   0.005
CP001080_932(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1...    44   0.007
BC144320_1(BC144320|pid:none) Homo sapiens cDNA clone MGC:177857...    43   0.009
AB201172_1(AB201172|pid:none) Homo sapiens GRDN mRNA for girdin,...    43   0.009
BC132736_1(BC132736|pid:none) Homo sapiens coiled-coil domain co...    43   0.009
BC078168_1(BC078168|pid:none) Homo sapiens coiled-coil domain co...    43   0.009
(Q3V6T2) RecName: Full=Girdin; AltName: Full=Girders of actin fi...    43   0.009
protein update 2009. 4.13
PSORT 

 psg: 0.66  gvh: 0.43  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoskeletal

>> prediction for CHR688 is cyt
5' end seq. ID CHR688F
5' end seq. 
>CHR688F.Seq
CAAAAAACNTTTCAAAANATATTGGAATTGATAATAATTTAAAATTAACCNCTTTGGTTG
GTTTGATTGAAATTGATGATTCATCAATTTATTCAAAACTNTTNNNNNNNNNN
Length of 5' end seq. 113
3' end seq. ID CHR688Z
3' end seq. 
>CHR688Z.Seq
NNNNNNNNNNACTATAAATTGTTTGGATTTGAAAGATTGTTATGCGATGAACAATACATT
GTATTGCAAAGAGTGTAAATTCAATTGTCATTATTCAAAACATATGCATATCACATATGA
AACATTTTTAATTAAAAAGGAAATGGAAAACGAAGATGTTAAAAAACAAATTGAAGAAGG
AATTGATGCAACATCTTTGAAAAGACAATGGGTTGAATCCTTAGAGAAAGAAATTAAGGA
AAATACTGATGAGAAAAATGAAATACTTAAAATTAGCTCACAACTTTCATACTTTTTAAA
AGAAAATTGCATTACAACATACCATGATACAGTCATTGAATATTTGAAAATTTGTATTGA
AAATGAAGAACTCAAATCAGATAAATCAGGTAAAAAATCAATGGAAGATAATTTAAAGTT
TTTCCAAGATCAACATGATTATTTTCAAAAAAATCTTTCCAACCAACAAATCCAAAAAAT
CACAACAAAAGATGTCCCAATTCTCATTGAAAAATTAAAAAACCTCAAAGAAAATGGTAA
AACACTTAGAGAATGCATCGAAGCTAATGTAAATGAACAATTAAAAACAGGCTTCAATCC
AATTGTTGTCACAAAAAATACAAATCATTCAAAAGAATGGGGTTTTATTTCTCAAT
Length of 3' end seq. 656
Connected seq. ID CHR688P
Connected seq. 
>CHR688P.Seq
CAAAAAACNTTTCAAAANATATTGGAATTGATAATAATTTAAAATTAACCNCTTTGGTTG
GTTTGATTGAAATTGATGATTCATCAATTTATTCAAAACTNTT----------ACTATAA
ATTGTTTGGATTTGAAAGATTGTTATGCGATGAACAATACATTGTATTGCAAAGAGTGTA
AATTCAATTGTCATTATTCAAAACATATGCATATCACATATGAAACATTTTTAATTAAAA
AGGAAATGGAAAACGAAGATGTTAAAAAACAAATTGAAGAAGGAATTGATGCAACATCTT
TGAAAAGACAATGGGTTGAATCCTTAGAGAAAGAAATTAAGGAAAATACTGATGAGAAAA
ATGAAATACTTAAAATTAGCTCACAACTTTCATACTTTTTAAAAGAAAATTGCATTACAA
CATACCATGATACAGTCATTGAATATTTGAAAATTTGTATTGAAAATGAAGAACTCAAAT
CAGATAAATCAGGTAAAAAATCAATGGAAGATAATTTAAAGTTTTTCCAAGATCAACATG
ATTATTTTCAAAAAAATCTTTCCAACCAACAAATCCAAAAAATCACAACAAAAGATGTCC
CAATTCTCATTGAAAAATTAAAAAACCTCAAAGAAAATGGTAAAACACTTAGAGAATGCA
TCGAAGCTAATGTAAATGAACAATTAAAAACAGGCTTCAATCCAATTGTTGTCACAAAAA
ATACAAATCATTCAAAAGAATGGGGTTTTATTTCTCAAT
Length of connected seq. 749
Full length Seq ID -
Full length Seq. -
Length of full length seq. -