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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR687
Library CH
(Link to library)
Clone ID CHR687
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHR687P
(Link to Original site)
Representative DNA sequence 
>CHR687 (CHR687Q) /CSM/CH/CHR6-D/CHR687Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XGAAGTTGAAGATGCTCCAGAGAGACTATATGAAAGAAATTCATAATTCCAATTTGAATA
AAGCAGTTCAAGAGGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCT
GTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAAT
GAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATC
GATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCT
GCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAA
CAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAA
GGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTT
ATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGAT
GCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAA
AATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGAC
CAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGAT
AAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTT
AATCATTNCTTTNCTTTTTAAAAAACT
sequence update 2002.10.25
Translated Amino Acid sequence 
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---KLKMLQRDYMKEIHNSNLNKAVQEG*rn*kttkw*wftcckls*dcnsngkc*k**n
yq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*
rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstr
ercclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprt
tr*iksrkkstiirtrtkskii*sxlxflkn
Translated Amino Acid sequence (All Frames) 
Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---evedaperlyerns*fqfe*sssrglkklkdnkmvmvhll*tlirl*lkwemlkimk
lpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrm
kknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnk
rtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnkskn
nkin*ikkkinny*nknkiknnliixxlfkk

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---KLKMLQRDYMKEIHNSNLNKAVQEG*rn*kttkw*wftcckls*dcnsngkc*k**n
yq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*
rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstr
ercclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprt
tr*iksrkkstiirtrtkskii*sxlxflkn

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---s*rcsreti*kkfiipi*ikqfkraeeierqqngngspavnshkivtqmgnvennei
tneqdaieqaqhlqriengedideyeaaqhevafldeneqdaaklqnemdqlellleene
eeqfsnknlqqlnenenqqqqqgqqqvqatnveqqiveqlkvikefqrqdqqkkqkiqqe
ndavylsdvekaqleldaelaknnkqenqdenlvqekqqspdqiknqlkniqheqqiqeq
qdklnqeknqqlleqeqnqk*fnhxfxf*kt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR687 (CHR687Q) /CSM/CH/CHR6-D/CHR687Q.Seq.d/                        801   0.0
AHQ546 (AHQ546Q) /CSM/AH/AHQ5-B/AHQ546Q.Seq.d/                        785   0.0
CHG195 (CHG195Q) /CSM/CH/CHG1-D/CHG195Q.Seq.d/                        777   0.0
CHO677 (CHO677Q) /CSM/CH/CHO6-D/CHO677Q.Seq.d/                        775   0.0
SHK721 (SHK721Q) /CSM/SH/SHK7-A/SHK721Q.Seq.d/                        771   0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        769   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        769   0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        769   0.0
SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/                        769   0.0
SHL319 (SHL319Q) /CSM/SH/SHL3-A/SHL319Q.Seq.d/                        769   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   656   0.0    9
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   0.006  7
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   0.010  11
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    36   0.012  10
AX344618|AX344618.1 Sequence 43 from Patent WO0200927.             42   0.018  4
BH133394|BH133394.1 ENTNI62TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38   0.021  2
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   0.10   13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   0.13   14
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   0.15   14
dna update 2005.11.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   259   9e-72
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   2.6
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   2.6
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    35   2.6
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   4.4
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   9.9
protein update 2009. 4.13
PSORT 

 psg: 0.40  gvh: 0.03  alm: 0.72  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.03
 nuc: 0.28  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: plasma membrane

>> prediction for CHR687 is nuc
5' end seq. ID CHR687F
5' end seq. 
>CHR687F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 121
3' end seq. ID CHR687Z
3' end seq. 
>CHR687Z.Seq
NNNNNNNNNNGAAGTTGAAGATGCTCCAGAGAGACTATATGAAAGAAATTCATAATTCCA
ATTTGAATAAAGCAGTTCAAGAGGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGT
TCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAA
ATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGT
GAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAA
CAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAAT
GAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAA
CAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAA
CTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAA
GAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAA
TTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAA
TCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAA
CAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAA
AAATAATTTAATCATTNCTTTNCTTTTTAAAAAACT
Length of 3' end seq. 816
Connected seq. ID CHR687P
Connected seq. 
>CHR687P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-GAAGTTGAAGATGCTCCAGAGAGACTATATGAAAGAAATTCATAATTCCAATTTGAATA
AAGCAGTTCAAGAGGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCT
GTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAAT
GAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATC
GATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCT
GCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAA
CAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAA
GGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTT
ATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGAT
GCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAA
AATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGAC
CAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGAT
AAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTT
AATCATTNCTTTNCTTTTTAAAAAACT
Length of connected seq. 917
Full length Seq ID -
Full length Seq. -
Length of full length seq. -