CHR684
Library CH
(Link to library)
Clone ID CHR684
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11926-1
Original site URL
Representative seq. ID CHR684P
(Link to Original site)
Representative DNA sequence
>CHR684 (CHR684Q) /CSM/CH/CHR6-D/CHR684Q.Seq.d/
TAAATACTCCAATTTCCTGTGACGATAATAATCCATGTACTGTTGATTCTTGCGATGACT
TAACTGGTTGTTGCAATACTCCAATCAATGTTGATGATAATAATCCATGTACCATCGATG
CCTGTACTAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAATAACAAAT
GTACAATTGATACATGTACCAAAGAAGGTGGTGTAACTCATACTCCAGTCAATACTGATG
ATAACAATGCCTGTACCCTTGATTCCTGCTCACCATCAACTGGTGTTTCCCATACCCCAA
TAAACTGTGATGATAATAATAAATGTACTGTAGATTCATGTTCAAACTCAACTGGTTGTG
TAAATACTCCAATTAACTGTGACGATAGTAATCCATGTACCGTAGACTCATGCACTAATT
CAACTGGTTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACCGTCGATG
CCTGTACCAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAACAACAAAT
GTACAATTGATGCATGTACCAAAGAAGGTGGTGTAACTCATACCCCACTCAATACTGATG
ATAACAATGCCTGTACAATTGATGCATGTACAAAAGAAAGTGGTGTNACCTCATACTCCA
GTCAATACTGATGATAACAATGCNTGTACCCTTGACTCCTGTTCACCATCAACTGGCGTT
TCCCACACCCCAATTAACTGNGATGATAGAATCCATGTNCCGTAAACTCATGNTCAAAAT
CAACCGGNTGNGGCACACTCCATTCATGTTGNGAAAAAANNCATGNACTGTGAATCNTGT
CCCAAACAACNGGXXXXXXXXXXACTCATACACCAATCAATACAGATGATAATAACAAAT
GTACATTAGATGCTTGTTCACCAAAGACTGGTGTAACTCATACACCAATCAATTGTGATG
ATGGAAACAAATGTACAATCAATAGTTGTTCACCATCAGTTGGTTGTATCTCAACACCAG
TTTCATGTCCAAAACCAAAAGATAAATGTTCAATCTCTCAATGTGATTCAGCCAAAGGTT
GCATCGAAGTCCCAATGAATTGTACCTCTGATAAATGTAATGAAGCATCATGTTGTGATG
GTGTTTGTACCTCAAAACCAATTAGCTGTCCAAAACCAAAGAATAAGTGTCAAGTTGCAA
AATGTGATTTAATTAAAGGTTGTACCGTCTCAAATGTAGTATGTGATGATGGTAATGCTT
GTACCGAAGATTCATGTTGTTCAGACACTGGTAAATGTCAATTCGAACCAATCAAACTTC
CAAAGAATAAAAACAAATGTATCATTTCAAAATGTGATCCAATTAAAGGTACAATCACCA
ACAGTACCGTAAACTGTGAATGTGATGACCTTTGTAACATTGGTGAATGTTGTGAAGATA
CAGGGAAATGTAATTACAGACAAAAAGATTGTGATGATAATAATCCAAAAACAGCTGATA
GTTGCGATTCCAAGACTGGTAAATGTATTAACAAACCATATAATGTTATCACAAGTGGTT
CTAATTTAATCTCTGGTTTAATTGGTGGTCTCATTGGTGGTGGTACAGGAGGTAAAGGTN
ATTGCAAAACTTGTAAAAATTAAATAACTCTTTTTATTTAATTATATTTTAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
kysnfl*r**smyc*flr*lnwllqysnqc****smyhrcly*inrcysypsqcr***qm
yn*ymyqrrwcnsyssqy***qclyp*flltinwcfpypnkl*****mycrfmfklnwlc
kysn*l*r**smyrrlmh*fnwlckhssqc****smyrrclyqinrcysypsqcr**qqm
yn*cmyqrrwcnsyptqy***qclyn*CMYKRKWCXLILQSILMITMXVPLTPVHHQLAF
PTPQLTXMIESMXRKLMXKINRXXHTPFMLXKXXXTVNXVPNNX---

---THTPINTDDNNKCTLDACSPKTGVTHTPINCDDGNKCTINSCSPSVGCISTPVSCPK
PKDKCSISQCDSAKGCIEVPMNCTSDKCNEASCCDGVCTSKPISCPKPKNKCQVAKCDLI
KGCTVSNVVCDDGNACTEDSCCSDTGKCQFEPIKLPKNKNKCIISKCDPIKGTITNSTVN
CECDDLCNIGECCEDTGKCNYRQKDCDDNNPKTADSCDSKTGKCINKPYNVITSGSNLIS
GLIGGLIGGGTGGKGXCKTCKN*itlfi*lyfk


Translated Amino Acid sequence (All Frames)
Frame A:
*ilqfpvtiiihvllilamt*lvvailqsmlmiiihvpsmpvlnqqvllipqsm*miitn
vqlihvpkkvv*lilqsilmitmpvplipahhqlvfpipq*tvmiiinvl*ihvqtqlvv
*ilqltvtivihvp*thaliqlvv*tlqsmlmiiihvpsmpvpnqqvllipqsm*mittn
vqlmhvpkkvv*liphsilmitmpvqlmhvqkkvvxphtpvntddnnactldscspstgv
shtpinxddrihvp*thxqnqpxxahsihvxkkxmxcescpkqx---

---THTPINTDDNNKCTLDACSPKTGVTHTPINCDDGNKCTINSCSPSVGCISTPVSCPK
PKDKCSISQCDSAKGCIEVPMNCTSDKCNEASCCDGVCTSKPISCPKPKNKCQVAKCDLI
KGCTVSNVVCDDGNACTEDSCCSDTGKCQFEPIKLPKNKNKCIISKCDPIKGTITNSTVN
CECDDLCNIGECCEDTGKCNYRQKDCDDNNPKTADSCDSKTGKCINKPYNVITSGSNLIS
GLIGGLIGGGTGGKGXCKTCKN*itlfi*lyfk

Frame B:
kysnfl*r**smyc*flr*lnwllqysnqc****smyhrcly*inrcysypsqcr***qm
yn*ymyqrrwcnsyssqy***qclyp*flltinwcfpypnkl*****mycrfmfklnwlc
kysn*l*r**smyrrlmh*fnwlckhssqc****smyrrclyqinrcysypsqcr**qqm
yn*cmyqrrwcnsyptqy***qclyn*CMYKRKWCXLILQSILMITMXVPLTPVHHQLAF
PTPQLTXMIESMXRKLMXKINRXXHTPFMLXKXXXTVNXVPNNX---

---lihqsiqmiitnvh*mlvhqrlv*lihqsivmmetnvqsivvhhqlvvsqhqfhvqn
qkinvqslnviqpkvasksq*ivplinvmkhhvvmvfvpqnqlavqnqrisvklqnvi*l
kvvpsqm*yvmmvmlvpkihvvqtlvnvnsnqsnfqriktnvsfqnviqlkvqsptvp*t
vnvmtfvtlvnvvkiqgnvitdkkivmiiiqkqlivaiprlvnvltnhimlsqvvli*sl
v*lvvslvvvqevkviaklvkik*lflfnyilk

Frame C:
ntpiscddnnpctvdscddltgccntpinvddnnpctidactkstgvthtpvnvddnnkc
tidtctkeggvthtpvntddnnactldscspstgvshtpincddnnkctvdscsnstgcv
ntpincddsnpctvdsctnstgcvntpvnvddnnpctvdactkstgvthtpvnvddnnkc
tidactkeggvthtplntddnnactidactkesgvtsyssqy***qcxyp*llftinwrf
phpn*lx**npcxvnsxskstgxgtlhscxekxhxl*ixsqtt---

---sytnqyr***qmyirclftkdwcnsytnql**wkqmynq*lftiswlylntsfmskt
kr*mfnlsm*fsqrlhrspnelyl**m**siml*wclylktn*lsktke*vssckm*fn*
rlyrlkcsm**w*clyrrfmlfrhw*msirtnqtske*kqmyhfkm*sn*rynhqqyrkl
*m**pl*hw*ml*ryrem*lqtkrl****skns**lrfqdw*my*qti*cyhkwf*fnlw
fnwwshwwwyrr*rxlqnl*klnnsfyliif*k

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR684 (CHR684Q) /CSM/CH/CHR6-D/CHR684Q.Seq.d/ 3142 0.0
SHC394 (SHC394Q) /CSM/SH/SHC3-D/SHC394Q.Seq.d/ 1586 0.0
CFC542 (CFC542Q) /CSM/CF/CFC5-B/CFC542Q.Seq.d/ 1538 0.0
SHG408 (SHG408Q) /CSM/SH/SHG4-A/SHG408Q.Seq.d/ 1522 0.0
CHM421 (CHM421Q) /CSM/CH/CHM4-A/CHM421Q.Seq.d/ 1515 0.0
SHA152 (SHA152Q) /CSM/SH/SHA1-C/SHA152Q.Seq.d/ 1507 0.0
SHA109 (SHA109Q) /CSM/SH/SHA1-A/SHA109Q.Seq.d/ 1507 0.0
CHS294 (CHS294Q) /CSM/CH/CHS2-D/CHS294Q.Seq.d/ 1505 0.0
SHG431 (SHG431Q) /CSM/SH/SHG4-B/SHG431Q.Seq.d/ 1501 0.0
CFC807 (CFC807Q) /CSM/CF/CFC8-A/CFC807Q.Seq.d/ 1501 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X78948|X78948.1 D.minutum ecmB gene. 50 7e-31 8
BX231032|BX231032.1 Danio rerio genomic clone DKEY-254O18, genomic survey sequence. 30 2e-05 7
CK991559|CK991559.1 EST0111 Eyestalk cDNA library Penaeus monodon cDNA clone ES-N-S03-555-W 5' similar to Histidine-rich glycoprotein precursor (Plasmodium lophurae), mRNA sequence. 30 5e-04 5
AF134683|AF134683.1 Plasmodium falciparum strain UNK1 CG2 omega repeat (cg2) gene, partial cds. 34 0.004 4
CR450730|CR450730.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-43P5. 36 0.005 6
BQ739629|BQ739629.1 PfESToab48c05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q9U0J6 Q9U0J6 HYPOTHETICAL 312.5 KD PROTEIN. ;, mRNA sequence. 30 0.056 4
BU494788|BU494788.1 PfESToab67g03.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence. 36 0.056 4
AF153878|AF153878.1 Plasmodium falciparum isolate CS167, microsatellite TA1 sequence. 32 0.092 4
AF134659|AF134659.1 Plasmodium falciparum strain BEN6 from Benin CG2 omega repeat (cg2) gene, partial cds. 32 0.092 4
AF134658|AF134658.1 Plasmodium falciparum strain SEN16 from Senegal CG2 omega repeat (cg2) gene, partial cds. 32 0.10 4
dna update 2005.11.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 679 0.0
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 503 e-141
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 498 e-139
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 309 2e-82
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 298 4e-79
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 285 4e-75
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 168 4e-40
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 138 5e-31
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 132 5e-29
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 128 5e-28
protein update 2009. 4.13
PSORT

psg: 0.96 gvh: 0.44 alm: 0.31 top: 0.33 tms: 0.07 mit: 0.40 mip: 0.10
nuc: 0.00 erl: 0.00 erm: 1.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.62 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

40.0 %: mitochondrial
20.0 %: cytoplasmic
16.0 %: Golgi
16.0 %: nuclear
8.0 %: endoplasmic reticulum

>> prediction for CHR684 is mit

5' end seq. ID CHR684F
5' end seq.
>CHR684F.Seq
TAAATACTCCAATTTCCTGTGACGATAATAATCCATGTACTGTTGATTCTTGCGATGACT
TAACTGGTTGTTGCAATACTCCAATCAATGTTGATGATAATAATCCATGTACCATCGATG
CCTGTACTAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAATAACAAAT
GTACAATTGATACATGTACCAAAGAAGGTGGTGTAACTCATACTCCAGTCAATACTGATG
ATAACAATGCCTGTACCCTTGATTCCTGCTCACCATCAACTGGTGTTTCCCATACCCCAA
TAAACTGTGATGATAATAATAAATGTACTGTAGATTCATGTTCAAACTCAACTGGTTGTG
TAAATACTCCAATTAACTGTGACGATAGTAATCCATGTACCGTAGACTCATGCACTAATT
CAACTGGTTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACCGTCGATG
CCTGTACCAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAACAACAAAT
GTACAATTGATGCATGTACCAAAGAAGGTGGTGTAACTCATACCCCACTCAATACTGATG
ATAACAATGCCTGTACAATTGATGCATGTACAAAAGAAAGTGGTGTNACCTCATACTCCA
GTCAATACTGATGATAACAATGCNTGTACCCTTGACTCCTGTTCACCATCAACTGGCGTT
TCCCACACCCCAATTAACTGNGATGATAGAATCCATGTNCCGTAAACTCATGNTCAAAAT
CAACCGGNTGNGGCACACTCCATTCATGTTGNGAAAAAANNCATGNACTGTGAATCNTGT
CCCAAACAACNGGNNNNNNNNNN
Length of 5' end seq. 863
3' end seq. ID CHR684Z
3' end seq.
>CHR684Z.Seq
NNNNNNNNNNACTCATACACCAATCAATACAGATGATAATAACAAATGTACATTAGATGC
TTGTTCACCAAAGACTGGTGTAACTCATACACCAATCAATTGTGATGATGGAAACAAATG
TACAATCAATAGTTGTTCACCATCAGTTGGTTGTATCTCAACACCAGTTTCATGTCCAAA
ACCAAAAGATAAATGTTCAATCTCTCAATGTGATTCAGCCAAAGGTTGCATCGAAGTCCC
AATGAATTGTACCTCTGATAAATGTAATGAAGCATCATGTTGTGATGGTGTTTGTACCTC
AAAACCAATTAGCTGTCCAAAACCAAAGAATAAGTGTCAAGTTGCAAAATGTGATTTAAT
TAAAGGTTGTACCGTCTCAAATGTAGTATGTGATGATGGTAATGCTTGTACCGAAGATTC
ATGTTGTTCAGACACTGGTAAATGTCAATTCGAACCAATCAAACTTCCAAAGAATAAAAA
CAAATGTATCATTTCAAAATGTGATCCAATTAAAGGTACAATCACCAACAGTACCGTAAA
CTGTGAATGTGATGACCTTTGTAACATTGGTGAATGTTGTGAAGATACAGGGAAATGTAA
TTACAGACAAAAAGATTGTGATGATAATAATCCAAAAACAGCTGATAGTTGCGATTCCAA
GACTGGTAAATGTATTAACAAACCATATAATGTTATCACAAGTGGTTCTAATTTAATCTC
TGGTTTAATTGGTGGTCTCATTGGTGGTGGTACAGGAGGTAAAGGTNATTGCAAAACTTG
TAAAAATTAAATAACTCTTTTTATTTAATTATATTTTAAAAA
Length of 3' end seq. 822
Connected seq. ID CHR684P
Connected seq.
>CHR684P.Seq
TAAATACTCCAATTTCCTGTGACGATAATAATCCATGTACTGTTGATTCTTGCGATGACT
TAACTGGTTGTTGCAATACTCCAATCAATGTTGATGATAATAATCCATGTACCATCGATG
CCTGTACTAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAATAACAAAT
GTACAATTGATACATGTACCAAAGAAGGTGGTGTAACTCATACTCCAGTCAATACTGATG
ATAACAATGCCTGTACCCTTGATTCCTGCTCACCATCAACTGGTGTTTCCCATACCCCAA
TAAACTGTGATGATAATAATAAATGTACTGTAGATTCATGTTCAAACTCAACTGGTTGTG
TAAATACTCCAATTAACTGTGACGATAGTAATCCATGTACCGTAGACTCATGCACTAATT
CAACTGGTTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACCGTCGATG
CCTGTACCAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAACAACAAAT
GTACAATTGATGCATGTACCAAAGAAGGTGGTGTAACTCATACCCCACTCAATACTGATG
ATAACAATGCCTGTACAATTGATGCATGTACAAAAGAAAGTGGTGTNACCTCATACTCCA
GTCAATACTGATGATAACAATGCNTGTACCCTTGACTCCTGTTCACCATCAACTGGCGTT
TCCCACACCCCAATTAACTGNGATGATAGAATCCATGTNCCGTAAACTCATGNTCAAAAT
CAACCGGNTGNGGCACACTCCATTCATGTTGNGAAAAAANNCATGNACTGTGAATCNTGT
CCCAAACAACNGG----------ACTCATACACCAATCAATACAGATGATAATAACAAAT
GTACATTAGATGCTTGTTCACCAAAGACTGGTGTAACTCATACACCAATCAATTGTGATG
ATGGAAACAAATGTACAATCAATAGTTGTTCACCATCAGTTGGTTGTATCTCAACACCAG
TTTCATGTCCAAAACCAAAAGATAAATGTTCAATCTCTCAATGTGATTCAGCCAAAGGTT
GCATCGAAGTCCCAATGAATTGTACCTCTGATAAATGTAATGAAGCATCATGTTGTGATG
GTGTTTGTACCTCAAAACCAATTAGCTGTCCAAAACCAAAGAATAAGTGTCAAGTTGCAA
AATGTGATTTAATTAAAGGTTGTACCGTCTCAAATGTAGTATGTGATGATGGTAATGCTT
GTACCGAAGATTCATGTTGTTCAGACACTGGTAAATGTCAATTCGAACCAATCAAACTTC
CAAAGAATAAAAACAAATGTATCATTTCAAAATGTGATCCAATTAAAGGTACAATCACCA
ACAGTACCGTAAACTGTGAATGTGATGACCTTTGTAACATTGGTGAATGTTGTGAAGATA
CAGGGAAATGTAATTACAGACAAAAAGATTGTGATGATAATAATCCAAAAACAGCTGATA
GTTGCGATTCCAAGACTGGTAAATGTATTAACAAACCATATAATGTTATCACAAGTGGTT
CTAATTTAATCTCTGGTTTAATTGGTGGTCTCATTGGTGGTGGTACAGGAGGTAAAGGTN
ATTGCAAAACTTGTAAAAATTAAATAACTCTTTTTATTTAATTATATTTTAAAAA
Length of connected seq. 1665
Full length Seq ID -
Full length Seq. -
Length of full length seq. -