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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR682
Library CH
(Link to library)
Clone ID CHR682
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16313-1
Original site URL
Representative seq. ID CHR682P
(Link to Original site)
Representative DNA sequence 
>CHR682 (CHR682Q) /CSM/CH/CHR6-D/CHR682Q.Seq.d/
ATTCATACAATTGCAAGTGCAAGTGTTAACTTGGATTTATTGGGTTTAACACCTGGACAA
AATTATCCATTTGATTTCTTTTATTGTGAACGTCACACTGTAGAATCTCATATAAGAATT
GAAACATCTTTGGCATTCAAGTGTCCTCGATATGATGAATGTGGTGTCTGTGAAGGTGAT
GGTACTTCTTGTTGTACTCCAAATAATTGTGATAATAATCCAATTTATAGAACCAACTGT
ATAACAGCAAAATGTTCAAATAATGTTTGCGTTACTTCAGCACCATATTGCAGTTCAACC
GAACCATGTACAGTTGGTCTTTGTACACCAGGTGTTGGTTGTTCAGTTGTTCCAAAAAAT
TGTGTAAATGAAAATCATTGTACCCAAGATTCATGTAATTCAACTATAAATGCTTGCCAA
CATGATCCAATTCCAGATTGTATCAATTGTGCCTATATTGGTTGTATCACTACTGATTAT
TGTAATGAACAAGTATGTTCAGCTGATGGAAGATCATGTGAAACTAGACCAAAGAATTGT
GATGATTTAAATTTTTGTACTGTTGATACATGTTCAAATGGAGTTTGCATTTACACAAGA
ATTGATAATTGTGTAAATTGTACAGGTCCAGGTATTGGTTGTATTACTACTGATCAATGT
AATCCAAATGTATGTTCTCCAGATGGTAATTCATGTATCATTCAACCAAAGAATTGTXXX
XXXXXXXATGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAA
TACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAAT
TGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCC
AATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCAC
TGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGG
TCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAG
AGGAATGGAATGTCATGTTGTTAGTGGTGTTCCAGAATGTTTACCATCAAACTACAAATG
TTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAA
AAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCAC
ACCAGTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTAATATATTATTT
CTTTTCTTTTTATTATATATTTTTATTAAAATTTTATAACCAAGTCAACTAATTTCAATT
TAATATTACAATATAAACATTAAGTTTATTGTAAAATTTAATAATAAATAAAAAAACAAC
NGCCCCATTTAAACA
sequence update 2002.10.25
Translated Amino Acid sequence 
IHTIASASVNLDLLGLTPGQNYPFDFFYCERHTVESHIRIETSLAFKCPRYDECGVCEGD
GTSCCTPNNCDNNPIYRTNCITAKCSNNVCVTSAPYCSSTEPCTVGLCTPGVGCSVVPKN
CVNENHCTQDSCNSTINACQHDPIPDCINCAYIGCITTDYCNEQVCSADGRSCETRPKNC
DDLNFCTVDTCSNGVCIYTRIDNCVNCTGPGIGCITTDQCNPNVCSPDGNSCIIQPKNC-
--

---MVLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCC
PIGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCK
RGMECHVVSGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKF
TPVCKPKGHSL*kklkliyyffsfyyifllkfynqvn*fqfniti*tlsll*nliinkkt
tapfk
Translated Amino Acid sequence (All Frames) 
Frame A:
IHTIASASVNLDLLGLTPGQNYPFDFFYCERHTVESHIRIETSLAFKCPRYDECGVCEGD
GTSCCTPNNCDNNPIYRTNCITAKCSNNVCVTSAPYCSSTEPCTVGLCTPGVGCSVVPKN
CVNENHCTQDSCNSTINACQHDPIPDCINCAYIGCITTDYCNEQVCSADGRSCETRPKNC
DDLNFCTVDTCSNGVCIYTRIDNCVNCTGPGIGCITTDQCNPNVCSPDGNSCIIQPKNC-
--

---MVLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCC
PIGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCK
RGMECHVVSGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKF
TPVCKPKGHSL*kklkliyyffsfyyifllkfynqvn*fqfniti*tlsll*nliinkkt
tapfk

Frame B:
fiqlqvqvltwiywv*hldkiihlisfivnvtl*nli*elkhlwhssvldmmnvvsvkvm
vllvvlqiiviiiqfieptv*qqnvqimfallqhhiavqpnhvqlvfvhqvlvvqlfqki
v*mkiivpkihviql*mlanmiqfqivsivpilvvslliivmnkyvqlmedhvkldqriv
mi*ifvllihvqmefaftqeliiv*ivqvqvlvvlllinviqmyvlqmvihvsfnqri--
-

---wf*ivmiitivlkisv*ilvfvkiiqltvvlhhhqfqlvelslqpllvyhklsvivv
qlvknvy*smvmkfvlnqqplvvfqn*llvvlvqqlaglqvitqnqvqvihiyvidiivk
eewnvmllvvfqnvyhqttnv*iv*ifivrdkvispvlwlkiqisflvnivvmvnhvvns
hqfanqkdthfkkn*n*yiisflfiiyfy*nfitkstnfnlilqykh*vycki***ikkq
xphln

Frame C:
synckckc*lgfigfntwtklsi*flll*tshcrisykn*nifgiqvssi**mwcl*r*w
yfllysk*l***snl*nqlynskmfk*clryfstilqfnrtmyswslytrcwlfscskkl
ck*kslyprfm*fnykclpt*snsrlyqlclywlyhy*ll**tsmfs*wkim*n*tkel*
*fkflyc*ymfkwslhlhkn**lcklyrsrywlyyy*sm*skcmfsrw*fmyhstkel--
-

---gfkl****rly*r*vfkywylsk*sn*rlcytitsfnwwnypsnhywcits*v*lls
nwskmfisqws*nly*tsnhwwysrinywlcwynnwqgyrslhriryr*stfm**isl*k
rngmscc*wcsrmftiklqmfrlfrssl*etr*fhlfyg*kskfhf**t*llw*iml*ih
tslqtkrtltlkktkinilflffllyifikil*psqlisi*yyninikfivkfnnk*knn
xpi*t
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR682 (CHR682Q) /CSM/CH/CHR6-D/CHR682Q.Seq.d/                       2502   0.0
AHA224 (AHA224Q) /CSM/AH/AHA2-A/AHA224Q.Seq.d/                       1421   0.0
SHA693 (SHA693Q) /CSM/SH/SHA6-D/SHA693Q.Seq.d/                       1405   0.0
CHP164 (CHP164Q) /CSM/CH/CHP1-C/CHP164Q.Seq.d/                       1217   0.0
SHD535 (SHD535Q) /CSM/SH/SHD5-B/SHD535Q.Seq.d/                       1179   0.0
CHE879 (CHE879Q) /CSM/CH/CHE8-D/CHE879Q.Seq.d/                       1176   0.0
CHG401 (CHG401Q) /CSM/CH/CHG4-A/CHG401Q.Seq.d/                       1172   0.0
CHL155 (CHL155Q) /CSM/CH/CHL1-C/CHL155Q.Seq.d/                       1164   0.0
CHN684 (CHN684Q) /CSM/CH/CHN6-D/CHN684Q.Seq.d/                       1156   0.0
SHG183 (SHG183Q) /CSM/SH/SHG1-D/SHG183Q.Seq.d/                       1148   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    42   0.22   7
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    38   0.66   9
AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    36   1.3    7
CZ291153|CZ291153.1 cp74a11.f Candida parapsilosis Random Genomic Library Candida parapsilosis genomic clone cp74a11, genomic survey sequence.    46   2.1    1
AC020547|AC020547.7 Homo sapiens BAC clone RP11-134F3 from 2, complete sequence.    46   2.1    1
AL359090|AL359090.15 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-69P2.    42   2.2    2
AC156695|AC156695.2 Bos taurus clone CH240-56A7, *** SEQUENCING IN PROGRESS ***, 62 unordered pieces.    32   3.7    2
AC148669|AC148669.1 Macaca mulatta Major Histocompatibility Complex BAC MMU063B15, complete sequence.    34   3.8    2
AC168497|AC168497.2 Strongylocentrotus purpuratus clone R3-3117D9, WORKING DRAFT SEQUENCE, 23 unordered pieces.    34   3.9    2
CV752175|CV752175.1 SJL6-009_A06_SJL6-009A06-T3_039.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   8.2    1
dna update 2005.11.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                541   e-156
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                305   1e-85
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                172   3e-41
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                159   2e-37
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                140   2e-33
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                126   1e-30
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                109   1e-25
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   103   1e-25
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   111   2e-25
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                115   3e-24
protein update 2009. 4.13
PSORT 

 psg: 0.85  gvh: 0.51  alm: 0.42  top: 0.30  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHR682 is cyt
5' end seq. ID CHR682F
5' end seq. 
>CHR682F.Seq
ATTCATACAATTGCAAGTGCAAGTGTTAACTTGGATTTATTGGGTTTAACACCTGGACAA
AATTATCCATTTGATTTCTTTTATTGTGAACGTCACACTGTAGAATCTCATATAAGAATT
GAAACATCTTTGGCATTCAAGTGTCCTCGATATGATGAATGTGGTGTCTGTGAAGGTGAT
GGTACTTCTTGTTGTACTCCAAATAATTGTGATAATAATCCAATTTATAGAACCAACTGT
ATAACAGCAAAATGTTCAAATAATGTTTGCGTTACTTCAGCACCATATTGCAGTTCAACC
GAACCATGTACAGTTGGTCTTTGTACACCAGGTGTTGGTTGTTCAGTTGTTCCAAAAAAT
TGTGTAAATGAAAATCATTGTACCCAAGATTCATGTAATTCAACTATAAATGCTTGCCAA
CATGATCCAATTCCAGATTGTATCAATTGTGCCTATATTGGTTGTATCACTACTGATTAT
TGTAATGAACAAGTATGTTCAGCTGATGGAAGATCATGTGAAACTAGACCAAAGAATTGT
GATGATTTAAATTTTTGTACTGTTGATACATGTTCAAATGGAGTTTGCATTTACACAAGA
ATTGATAATTGTGTAAATTGTACAGGTCCAGGTATTGGTTGTATTACTACTGATCAATGT
AATCCAAATGTATGTTCTCCAGATGGTAATTCATGTATCATTCAACCAAAGAATTGTNNN
NNNNNNN
Length of 5' end seq. 727
3' end seq. ID CHR682Z
3' end seq. 
>CHR682Z.Seq
NNNNNNNNNNATGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTT
AAATACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTC
AATTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTG
TCCAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAAC
CACTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTAC
AGGTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAA
AAGAGGAATGGAATGTCATGTTGTTAGTGGTGTTCCAGAATGTTTACCATCAAACTACAA
ATGTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGT
TAAAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATT
CACACCAGTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTAATATATTA
TTTCTTTTCTTTTTATTATATATTTTTATTAAAATTTTATAACCAAGTCAACTAATTTCA
ATTTAATATTACAATATAAACATTAAGTTTATTGTAAAATTTAATAATAAATAAAAAAAC
AACNGCCCCATTTAAACA
Length of 3' end seq. 738
Connected seq. ID CHR682P
Connected seq. 
>CHR682P.Seq
ATTCATACAATTGCAAGTGCAAGTGTTAACTTGGATTTATTGGGTTTAACACCTGGACAA
AATTATCCATTTGATTTCTTTTATTGTGAACGTCACACTGTAGAATCTCATATAAGAATT
GAAACATCTTTGGCATTCAAGTGTCCTCGATATGATGAATGTGGTGTCTGTGAAGGTGAT
GGTACTTCTTGTTGTACTCCAAATAATTGTGATAATAATCCAATTTATAGAACCAACTGT
ATAACAGCAAAATGTTCAAATAATGTTTGCGTTACTTCAGCACCATATTGCAGTTCAACC
GAACCATGTACAGTTGGTCTTTGTACACCAGGTGTTGGTTGTTCAGTTGTTCCAAAAAAT
TGTGTAAATGAAAATCATTGTACCCAAGATTCATGTAATTCAACTATAAATGCTTGCCAA
CATGATCCAATTCCAGATTGTATCAATTGTGCCTATATTGGTTGTATCACTACTGATTAT
TGTAATGAACAAGTATGTTCAGCTGATGGAAGATCATGTGAAACTAGACCAAAGAATTGT
GATGATTTAAATTTTTGTACTGTTGATACATGTTCAAATGGAGTTTGCATTTACACAAGA
ATTGATAATTGTGTAAATTGTACAGGTCCAGGTATTGGTTGTATTACTACTGATCAATGT
AATCCAAATGTATGTTCTCCAGATGGTAATTCATGTATCATTCAACCAAAGAATTGT---
-------ATGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAA
TACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAAT
TGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCC
AATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCAC
TGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGG
TCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAG
AGGAATGGAATGTCATGTTGTTAGTGGTGTTCCAGAATGTTTACCATCAAACTACAAATG
TTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAA
AAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCAC
ACCAGTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTAATATATTATTT
CTTTTCTTTTTATTATATATTTTTATTAAAATTTTATAACCAAGTCAACTAATTTCAATT
TAATATTACAATATAAACATTAAGTTTATTGTAAAATTTAATAATAAATAAAAAAACAAC
NGCCCCATTTAAACA
Length of connected seq. 1445
Full length Seq ID -
Full length Seq. -
Length of full length seq. -