CHR677 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHR677
Library	CH (Link to library)
Clone ID	CHR677 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U10941-1\|Contig-U12636-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHR6-D/CHR677Q.Seq.d/
Representative seq. ID	CHR677P (Link to Original site)
Representative DNA sequence	>CHR677 (CHR677Q) /CSM/CH/CHR6-D/CHR677Q.Seq.d/ CTAACTCACACACACACACATACACATACACACAGATACATACACATACATACATAAAAT CAAATATATAAAATGAGTAAATCAGCAGCATTTCTTTGTAAGAAAAAAGCAGCATTACAA TGGATAGAGAATGTATTGGATATTAAAATTGATCAAAGTAAAGATTTTGCACAGATTTTA GATGATGGTGTATTATTATGTAAAGTTATGCATACGATTAGTCCAAGATTAATGCCAAGA ATTTCCAATCCAGATACAGCCAATACACCAAAAACAACCATTCGTTTCAAATACAATGAA AACATATCTTTCTTTATTCAAGCATGTGCTGATATGGGTGTACCACGTCATAAAAGATTC ACATTATTAGATATCGTTAATAATCAAATCACTTATTCAAATATTAGAAGAGTAATTGAA TGTTTAGAATCTGTTTGTAAAATTGCAAATTCAGATAGCAATTATGATTTTTCAGTTGAA TGGCCACAACTTAATGCAGAGGAAGAGAAATTTTCAAATGATCAAATTAATCATGCAGAA CAATTGTTAGCACAATTTACAATTAGAGAGAATAAAAGAXXXXXXXXXXTTCAAGAGAAA TTAGATGGTGATCAAACTCAACAACTCGTTAAATCTCATAGACGTTTCATTAAGGAAGGT GAATTTCATGAGGTACTACCAAAGGGAAAGAAAAGTTTAATCGTACTCTATCTCTTTAAT GATAGTTTGGCAATCACTCGTCCAAATAAATCAAGTCGTTCCTCTTTCTTTGGTAAACAA AAAACAATTCGTCTTCAATTCGAACAAATCATTTTCCTTCATCAATTGGTGCTAAAAGAG TTTGAAGGTTCATTAAATCTTCAAATTCTAAAAGAAAAATCATTCTCTATGATGATTACT GCCCCCGATAAAGATACTCTCTCCGAATGGATTAAAGCAATTAACATTGAAAAAGTAGAA TATCAAAAGACCCTAAGTGATCATAACGATAGACAAATGAGTCATGTCGTTGAAAAAGCT GAACAAACTAAACAAAAAATTGAAGAGAAATTCACTCGTTCCTCTGGTCAATACAATACC AAGGATGTTGAATCAATAGGTGGTAATGAAAATCATGCCTCCCATGGTAGTAACAATAGT TTATCCGGTAGTAATGGTGGTAATTCCTCTGAAGAATTATCAAATTCACTTGGTGATATG AAATCTGGTAAAATGTCTTTACGTGAAAGAAGAGTTAAATTGGCTCAAGAATCAAAAACA AAAAGATTATNCTGGTACAAGTTCTTCATTTACAAATTTAAAGNATCAAAATTTAAAAGN ATTCAAAATAA
sequence update	2002.10.25
Translated Amino Acid sequence	lthththththryihiht*NQIYKMSKSAAFLCKKKAALQWIENVLDIKIDQSKDFAQIL DDGVLLCKVMHTISPRLMPRISNPDTANTPKTTIRFKYNENISFFIQACADMGVPRHKRF TLLDIVNNQITYSNIRRVIECLESVCKIANSDSNYDFSVEWPQLNAEEEKFSNDQINHAE QLLAQFTIRENKR--- ---QEKLDGDQTQQLVKSHRRFIKEGEFHEVLPKGKKSLIVLYLFNDSLAITRPNKSSRS SFFGKQKTIRLQFEQIIFLHQLVLKEFEGSLNLQILKEKSFSMMITAPDKDTLSEWIKAI NIEKVEYQKTLSDHNDRQMSHVVEKAEQTKQKIEEKFTRSSGQYNTKDVESIGGNENHAS HGSNNSLSGSNGGNSSEELSNSLGDMKSGKMSLRERRVKLAQESKTKRLXWYKFFIYKFK XSKFKXIQN
Translated Amino Acid sequence (All Frames)	Frame A: lthththththryihihtNQIYKMSKSAAFLCKKKAALQWIENVLDIKIDQSKDFAQIL DDGVLLCKVMHTISPRLMPRISNPDTANTPKTTIRFKYNENISFFIQACADMGVPRHKRF TLLDIVNNQITYSNIRRVIECLESVCKIANSDSNYDFSVEWPQLNAEEEKFSNDQINHAE QLLAQFTIRENKR--- ---fkrnmviklnnslnlidvslrkvnfmryyqrerkvsysislmivwqslvqinqvv plslvnkkqfvfnsnksfsfinwckslkvhifkfkknhsl*llppikilspnglkq ltlkknikrpviitidkvmslkklnklnkklkrnslvplvntiprmlnqvvmkimp pmvvtivypvvmvviplknyqihlvinlvkclyvkeelnwlknqkqkdyxgtsssftnl kxqnlkxfki Frame B: lththihihtdtytyihkikyikvnqqhffvrkkqhyngrmywilklikvkilhrf mmvyyyvklcirlvqdcqefpiqiqpihqkqpfvsntmktylslfkhvliwvyhvikds hyisliiksliqileelnvnlfvklqiqiaimifqlnghnlmqrkrnfqmiklimqn nchnlqlerik--- ---sreirwsnsttristfhgrisgttkgkekfnrtlsl*fgnhsskiksf lflwtknnsssirtnhfpssigakrvrfikssnskrkiilyddycprryslrmdsn hksriskdpksrtnescrkstntknreihsflwsiqyqgcinrwkscl pwqfirwwflriikftwyeiwnvftkksigsriknkkixlvqvlhlqi xikikxsk Frame C: nshthtytytqihthtyiksnineissislekssitmdrecigynskrfctdfr wciimsyaydskinaknfqsrysqytknnhsfqiqkhiflyssmcygcttskih iiryr*snhlfkyksnmfriclnckfrqlffsmattcrgreifksnscrt ivstiynrek--- ---QEKLDGDQTQQLVKSHRRFIKEGEFHEVLPKGKKSLIVLYLFNDSLAITRPNKSSRS SFFGKQKTIRLQFEQIIFLHQLVLKEFEGSLNLQILKEKSFSMMITAPDKDTLSEWIKAI NIEKVEYQKTLSDHNDRQMSHVVEKAEQTKQKIEEKFTRSSGQYNTKDVESIGGNENHAS HGSNNSLSGSNGGNSSEELSNSLGDMKSGKMSLRERRVKLAQESKTKRLXWYKFFIYKFK XSKFKXIQN
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHR677 (CHR677Q) /CSM/CH/CHR6-D/CHR677Q.Seq.d/ 2450 0.0 AHO866 (AHO866Q) /CSM/AH/AHO8-C/AHO866Q.Seq.d/ 1415 0.0 CHR328 (CHR328Q) /CSM/CH/CHR3-B/CHR328Q.Seq.d/ 1411 0.0 AHN258 (AHN258Q) /CSM/AH/AHN2-C/AHN258Q.Seq.d/ 1402 0.0 AHB101 (AHB101Q) /CSM/AH/AHB1-A/AHB101Q.Seq.d/ 1396 0.0 SHF820 (SHF820Q) /CSM/SH/SHF8-A/SHF820Q.Seq.d/ 1394 0.0 SHK831 (SHK831Q) /CSM/SH/SHK8-B/SHK831Q.Seq.d/ 1350 0.0 VHH140 (VHH140Q) /CSM/VH/VHH1-B/VHH140Q.Seq.d/ 1269 0.0 CHQ812 (CHQ812Q) /CSM/CH/CHQ8-A/CHQ812Q.Seq.d/ 1243 0.0 AHP589 (AHP589Q) /CSM/AH/AHP5-D/AHP589Q.Seq.d/ 1068 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AL035476\|AL035476.7 Plasmodium falciparum MAL4P3. 38 0.069 2 BU496103\|BU496103.1 PfESToac03h06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence. 38 0.093 2 BQ596676\|BQ596676.1 PfESToab21a07.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence. 38 0.093 2 BU496791\|BU496791.1 PfESToab58h08.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence. 38 0.093 2 BU495760\|BU495760.1 PfESToab77d04.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence. 38 0.093 2 BQ596343\|BQ596343.1 PfESToab32e07.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence. 38 0.093 2 BU498036\|BU498036.1 PfESToab91g10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence. 38 0.093 2 BQ452051\|BQ452051.1 PfESToaa91d04.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence. 38 0.093 2 BU498556\|BU498556.1 PfESToab98g09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence. 38 0.093 2 BU495759\|BU495759.1 PfESToab77d03.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence. 38 0.093 2
dna update	2005.11.20
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AY223463_1(AY223463\|pid:none) Schistosoma japonicum clone ZZZ59 ... 75 5e-12 (Q24799) RecName: Full=Myophilin; &DQ679473_1(DQ679473\|pid:none... 72 6e-11 S40075(S40075)SM22 / calponin homolog - tapeworm (Echinococcus g... 69 4e-10 EF134226_1(EF134226\|pid:none) Noctiluca scintillans isolate Nsc-... 63 2e-08 EU930212_1(EU930212\|pid:none) Simulium vittatum clone SV-130 cal... 61 1e-07 AE014296_810(AE014296\|pid:none) Drosophila melanogaster chromoso... 60 1e-07 DQ443182_1(DQ443182\|pid:none) Bombyx mori transgelin mRNA, compl... 60 2e-07 AE016819_86(AE016819\|pid:none) Ashbya gossypii (= Eremothecium g... 59 3e-07 CR382131_1333(CR382131\|pid:none) Yarrowia lipolytica strain CLIB... 59 4e-07 DQ440275_1(DQ440275\|pid:none) Aedes aegypti clone AET-3508 calpo... 58 6e-07
protein update	2009. 4.13
PSORT	psg: 0.70 gvh: 0.46 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.00 nuc: 0.13 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: nuclear 32.0 %: cytoplasmic 8.0 %: mitochondrial 4.0 %: vacuolar >> prediction for CHR677 is nuc
5' end seq. ID	CHR677F
5' end seq.	>CHR677F.Seq CTAACTCACACACACACACATACACATACACACAGATACATACACATACATACATAAAAT CAAATATATAAAATGAGTAAATCAGCAGCATTTCTTTGTAAGAAAAAAGCAGCATTACAA TGGATAGAGAATGTATTGGATATTAAAATTGATCAAAGTAAAGATTTTGCACAGATTTTA GATGATGGTGTATTATTATGTAAAGTTATGCATACGATTAGTCCAAGATTAATGCCAAGA ATTTCCAATCCAGATACAGCCAATACACCAAAAACAACCATTCGTTTCAAATACAATGAA AACATATCTTTCTTTATTCAAGCATGTGCTGATATGGGTGTACCACGTCATAAAAGATTC ACATTATTAGATATCGTTAATAATCAAATCACTTATTCAAATATTAGAAGAGTAATTGAA TGTTTAGAATCTGTTTGTAAAATTGCAAATTCAGATAGCAATTATGATTTTTCAGTTGAA TGGCCACAACTTAATGCAGAGGAAGAGAAATTTTCAAATGATCAAATTAATCATGCAGAA CAATTGTTAGCACAATTTACAATTAGAGAGAATAAAAGANNNNNNNNNN
Length of 5' end seq.	589
3' end seq. ID	CHR677Z
3' end seq.	>CHR677Z.Seq NNNNNNNNNNTTCAAGAGAAATTAGATGGTGATCAAACTCAACAACTCGTTAAATCTCAT AGACGTTTCATTAAGGAAGGTGAATTTCATGAGGTACTACCAAAGGGAAAGAAAAGTTTA ATCGTACTCTATCTCTTTAATGATAGTTTGGCAATCACTCGTCCAAATAAATCAAGTCGT TCCTCTTTCTTTGGTAAACAAAAAACAATTCGTCTTCAATTCGAACAAATCATTTTCCTT CATCAATTGGTGCTAAAAGAGTTTGAAGGTTCATTAAATCTTCAAATTCTAAAAGAAAAA TCATTCTCTATGATGATTACTGCCCCCGATAAAGATACTCTCTCCGAATGGATTAAAGCA ATTAACATTGAAAAAGTAGAATATCAAAAGACCCTAAGTGATCATAACGATAGACAAATG AGTCATGTCGTTGAAAAAGCTGAACAAACTAAACAAAAAATTGAAGAGAAATTCACTCGT TCCTCTGGTCAATACAATACCAAGGATGTTGAATCAATAGGTGGTAATGAAAATCATGCC TCCCATGGTAGTAACAATAGTTTATCCGGTAGTAATGGTGGTAATTCCTCTGAAGAATTA TCAAATTCACTTGGTGATATGAAATCTGGTAAAATGTCTTTACGTGAAAGAAGAGTTAAA TTGGCTCAAGAATCAAAAACAAAAAGATTATNCTGGTACAAGTTCTTCATTTACAAATTT AAAGNATCAAAATTTAAAAGNATTCAAAATAA
Length of 3' end seq.	752
Connected seq. ID	CHR677P
Connected seq.	>CHR677P.Seq CTAACTCACACACACACACATACACATACACACAGATACATACACATACATACATAAAAT CAAATATATAAAATGAGTAAATCAGCAGCATTTCTTTGTAAGAAAAAAGCAGCATTACAA TGGATAGAGAATGTATTGGATATTAAAATTGATCAAAGTAAAGATTTTGCACAGATTTTA GATGATGGTGTATTATTATGTAAAGTTATGCATACGATTAGTCCAAGATTAATGCCAAGA ATTTCCAATCCAGATACAGCCAATACACCAAAAACAACCATTCGTTTCAAATACAATGAA AACATATCTTTCTTTATTCAAGCATGTGCTGATATGGGTGTACCACGTCATAAAAGATTC ACATTATTAGATATCGTTAATAATCAAATCACTTATTCAAATATTAGAAGAGTAATTGAA TGTTTAGAATCTGTTTGTAAAATTGCAAATTCAGATAGCAATTATGATTTTTCAGTTGAA TGGCCACAACTTAATGCAGAGGAAGAGAAATTTTCAAATGATCAAATTAATCATGCAGAA CAATTGTTAGCACAATTTACAATTAGAGAGAATAAAAGA----------TTCAAGAGAAA TTAGATGGTGATCAAACTCAACAACTCGTTAAATCTCATAGACGTTTCATTAAGGAAGGT GAATTTCATGAGGTACTACCAAAGGGAAAGAAAAGTTTAATCGTACTCTATCTCTTTAAT GATAGTTTGGCAATCACTCGTCCAAATAAATCAAGTCGTTCCTCTTTCTTTGGTAAACAA AAAACAATTCGTCTTCAATTCGAACAAATCATTTTCCTTCATCAATTGGTGCTAAAAGAG TTTGAAGGTTCATTAAATCTTCAAATTCTAAAAGAAAAATCATTCTCTATGATGATTACT GCCCCCGATAAAGATACTCTCTCCGAATGGATTAAAGCAATTAACATTGAAAAAGTAGAA TATCAAAAGACCCTAAGTGATCATAACGATAGACAAATGAGTCATGTCGTTGAAAAAGCT GAACAAACTAAACAAAAAATTGAAGAGAAATTCACTCGTTCCTCTGGTCAATACAATACC AAGGATGTTGAATCAATAGGTGGTAATGAAAATCATGCCTCCCATGGTAGTAACAATAGT TTATCCGGTAGTAATGGTGGTAATTCCTCTGAAGAATTATCAAATTCACTTGGTGATATG AAATCTGGTAAAATGTCTTTACGTGAAAGAAGAGTTAAATTGGCTCAAGAATCAAAAACA AAAAGATTATNCTGGTACAAGTTCTTCATTTACAAATTTAAAGNATCAAAATTTAAAAGN ATTCAAAATAA
Length of connected seq.	1321
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas