CHR667
Library CH
(Link to library)
Clone ID CHR667
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15851-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHR667 (CHR667Q) /CSM/CH/CHR6-C/CHR667Q.Seq.d/
XXXXXXXXXXGAAGAAAACATTCAACCAGAAGAATTCTTTCAAATTATTTTCAATTTCAT
TAATTTGGTATTGAAAGTTCATAAAGAGAATGAAGATATTAGAATTGCTGCATTACCAAA
ATCAAAGAAATATCAAGAACAACAAAATAAACCAACTCAAAATAATGATCATAGTANTAA
ATCAAAATTATCAAATTTACCATCTTCAAGTAGTATTAATGATGAAAGTTCTTCATCGGC
ATCATTGTCATCATTATCAACTAATGTTAATGCCAATACTGAAAATGATAATTTGGAATT
ATCAAAACTTGGTTTCTTATCAAAATTAAGAAAAAAGAGATCAAAATCAGAACAAGAACC
TGTGGTGGAGCCAATTCAAATCACTCCAAAAGTTGGATCAGCTGCATCTGCAGAACCTTC
ACCATCCATAAAGAGTAGAGATAAGAAAGAATCATTTAAGTCTCCAATTTTCAGATCTCC
AAAATTCAAGGTATCTTCAATTTCACCAAAATTAAAAGCAACTTTAAATTCAATATCAAA
AACTTTAAGAAAACAACAAGTAGAATCACCATCACCAAATATGTCACCATTTACTTCAAC
TGCAATTAGTGAAAAAGCTTCAATTTATGATAAAAATATTAATAATATTCAACCATCATC
ATCATCATCATCATCATCATCATCATCATCATCATCATCAACAATAACGGAAAGAAATCA
CACAATACTGAATCNAAATAAAGAAAGAATTTATCTCAAATTCATCAAGGNATAAAGNAT
AAAGAAAAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---ENIQPEEFFQIIFNFINLVLKVHKENEDIRIAALPKSKKYQEQQNKPTQNNDHSXKS
KLSNLPSSSSINDESSSSASLSSLSTNVNANTENDNLELSKLGFLSKLRKKRSKSEQEPV
VEPIQITPKVGSAASAEPSPSIKSRDKKESFKSPIFRSPKFKVSSISPKLKATLNSISKT
LRKQQVESPSPNMSPFTSTAISEKASIYDKNINNIQPSSSSSSSSSSSSSSSTITERNHT
ILNXNKERIYLKFIKX*xikk


Translated Amino Acid sequence (All Frames)
Frame A:
---kktfnqknsfklfsisliwy*kfikrmkilellhyqnqrniknnkinqlkimiivxn
qnyqiyhlqvvlmmkvlhrhhchhyqlmlmpilkmiiwnyqnlvsyqn*ekrdqnqnknl
wwsqfkslqkldqlhlqnlhhp*rveirknhlslqfsdlqnsrylqfhqn*kql*iqyqk
l*ennk*nhhhqichhllqlqlvkklqfmikiliifnhhhhhhhhhhhhhhhqq*rkeit
qy*ixikkefisnssrxkx*rk


Frame B:
---rkhstrrilsnyfqfh*fgiess*re*ry*nccitkikeisrttk*tnsk**s*x*i
kiikftifk*y***kffigiiviiin*c*cqy*k**fgiiktwflikikkkeikirtrtc
ggansnhskswiscicrtftihke*r*erii*vsnfqiskiqgifnftkiksnfkfnikn
fkkttsrititkyvtiyfncn**ksfnl**ky**ystiiiiiiiiiiiiiiinnngkksh
ntesk*rknlsqihqgikxkek


Frame C:
---ENIQPEEFFQIIFNFINLVLKVHKENEDIRIAALPKSKKYQEQQNKPTQNNDHSXKS
KLSNLPSSSSINDESSSSASLSSLSTNVNANTENDNLELSKLGFLSKLRKKRSKSEQEPV
VEPIQITPKVGSAASAEPSPSIKSRDKKESFKSPIFRSPKFKVSSISPKLKATLNSISKT
LRKQQVESPSPNMSPFTSTAISEKASIYDKNINNIQPSSSSSSSSSSSSSSSTITERNHT
ILNXNKERIYLKFIKX*xikk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR667 (CHR667Q) /CSM/CH/CHR6-C/CHR667Q.Seq.d/ 1269 0.0
AFK825 (AFK825Q) /CSM/AF/AFK8-B/AFK825Q.Seq.d/ 1221 0.0
AHB410 (AHB410Q) /CSM/AH/AHB4-A/AHB410Q.Seq.d/ 1219 0.0
CHJ159 (CHJ159Q) /CSM/CH/CHJ1-C/CHJ159Q.Seq.d/ 967 0.0
SLA612 (SLA612Q) /CSM/SL/SLA6-A/SLA612Q.Seq.d/ 965 0.0
CFH513 (CFH513Q) /CSM/CF/CFH5-A/CFH513Q.Seq.d/ 801 0.0
AHP265 (AHP265Q) /CSM/AH/AHP2-C/AHP265Q.Seq.d/ 664 0.0
CHI165 (CHI165Q) /CSM/CH/CHI1-C/CHI165Q.Seq.d/ 188 9e-47
SHF416 (SHF416Q) /CSM/SH/SHF4-A/SHF416Q.Seq.d/ 113 4e-24
SSF435 (SSF435Q) /CSM/SS/SSF4-B/SSF435Q.Seq.d/ 40 0.050

own update 2002.11.28
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF362369|AF362369.2 Dictyostelium discoideum histidine kinase DhkG (dhkG) gene, complete cds. 38 0.001 4
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 42 0.002 10
AC129399|AC129399.4 Rattus norvegicus clone CH230-3N20, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 54 0.005 1
AC016323|AC016323.4 Homo sapiens clone RP11-29G15, WORKING DRAFT SEQUENCE, 24 unordered pieces. 40 0.026 8
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 36 0.030 10
AX344565|AX344565.1 Sequence 16 from Patent WO0200932. 38 0.043 8
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence. 36 0.060 7
DE251653|DE251653.1 Oryzias latipes DNA, clone: ola1-119K06.F, genomic survey sequence. 50 0.071 1
CR105641|CR105641.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN347m23. 46 0.19 2
CR052856|CR052856.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN33p19. 46 0.21 2
dna update 2005.11.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF479306_1(AF479306|pid:none) Arachis hypogaea putative extensin... 40 0.11
AM494971_436(AM494971|pid:none) Leishmania braziliensis chromoso... 35 2.6
AP005583_15(AP005583|pid:none) Oryza sativa Japonica Group genom... 34 4.5
AP008211_283(AP008211|pid:none) Oryza sativa (japonica cultivar-... 34 4.5
AC147431_32(AC147431|pid:none) Medicago truncatula clone mth2-88... 34 5.9
AC139600_25(AC139600|pid:none) Medicago truncatula clone mth2-20... 34 5.9
(Q9NUC0) RecName: Full=SERTA domain-containing protein 4; &AK31... 34 5.9
AP009493_2359(AP009493|pid:none) Streptomyces griseus subsp. gri... 33 7.7

protein update 2009. 1. 4
PSORT

psg: 0.75 gvh: 0.32 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.11 mip: 0.00
nuc: 0.10 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
44.0 %: nuclear
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for CHR667 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHR667Z
3' end seq.
>CHR667Z.Seq
NNNNNNNNNNGAAGAAAACATTCAACCAGAAGAATTCTTTCAAATTATTTTCAATTTCAT
TAATTTGGTATTGAAAGTTCATAAAGAGAATGAAGATATTAGAATTGCTGCATTACCAAA
ATCAAAGAAATATCAAGAACAACAAAATAAACCAACTCAAAATAATGATCATAGTANTAA
ATCAAAATTATCAAATTTACCATCTTCAAGTAGTATTAATGATGAAAGTTCTTCATCGGC
ATCATTGTCATCATTATCAACTAATGTTAATGCCAATACTGAAAATGATAATTTGGAATT
ATCAAAACTTGGTTTCTTATCAAAATTAAGAAAAAAGAGATCAAAATCAGAACAAGAACC
TGTGGTGGAGCCAATTCAAATCACTCCAAAAGTTGGATCAGCTGCATCTGCAGAACCTTC
ACCATCCATAAAGAGTAGAGATAAGAAAGAATCATTTAAGTCTCCAATTTTCAGATCTCC
AAAATTCAAGGTATCTTCAATTTCACCAAAATTAAAAGCAACTTTAAATTCAATATCAAA
AACTTTAAGAAAACAACAAGTAGAATCACCATCACCAAATATGTCACCATTTACTTCAAC
TGCAATTAGTGAAAAAGCTTCAATTTATGATAAAAATATTAATAATATTCAACCATCATC
ATCATCATCATCATCATCATCATCATCATCATCATCATCAACAATAACGGAAAGAAATCA
CACAATACTGAATCNAAATAAAGAAAGAATTTATCTCAAATTCATCAAGGNATAAAGNAT
AAAGAAAAA
Length of 3' end seq. 789
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -