>CHR663 (CHR663Q) /CSM/CH/CHR6-C/CHR663Q.Seq.d/
GTATGATTATTATAATTCAAATTAAAAATATATTATATAAATATATATAAATATATATTA
AATAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAGAAAAAAAAAA
AANTAAAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAAANCCNAAAAAAAAAANCCCNNN
AAAAAAAXXXXXXXXXXGTAAATGTGTAGCTCAAGATTCTCATTGTGATGATGGTAATCC
ATGTACTGATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAAGTTGGTCA
ATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTACAGTTG
TACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAA
AATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGA
TTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTCGATAGAAG
ATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGG
TAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAA
AGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTT
AGGTGCTGCTATATTTGCGGGTAAGNAAG

miiiiqiknilykyi*iyik*k***NKFNIIKNFFEKKKKXKKKKKKKKPXKXXKKKXXX
K---

---KCVAQDSHCDDGNPCTDNACVASANSTANSQVGQCTQTPTAKCDLGDKCMVYSCTLE
GGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDRRCAP
DNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVVVGAVVLGAA
IFAGKX

Frame A:
v*ll*fklkiyyiniykyilnknnnkinli**kiflrkkkx*kkkkkkknpkkxxkkxpx
kk---

---vnv*lkilivmmvihvlimlvslqlivppiaklvnalklqllnviwvinvwftvvpw
kvvvmqlnvfvqtlvlvklvivnlvsvvn*riefvlpigivlklnvmqnmvafnsiedvl
liivnvkkvsv*tillsvkmmenvflkimiqnhlfvkkll*fqllllqvll*lvllf*vl
lylrvxk

Frame B:
ydyynsn*kyii*iyiniy*ikiiik*i*ynkkff*ekkkxkkkkkkkktxkxpkkkxpx
kk---

---*mcssrfsl**w*smy**clcrfs**yrq*pswsmhsnsnc*m*fg**myglqlylg
rwl*cnstclsklwcl*nwll*twfrl*ikg*slffrlvly*ssm*ckiwlhsir*kmcs
****msrrclckqycyr*k*wkmyf*rl*skticlskscfsfnccyckcccswcccfrcc
yicg*x

Frame C:
miiiiqiknilykyi*iyik*k***NKFNIIKNFFEKKKKXKKKKKKKKPXKXXKKKXXX
K---

---KCVAQDSHCDDGNPCTDNACVASANSTANSQVGQCTQTPTAKCDLGDKCMVYSCTLE
GGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDRRCAP
DNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVVVGAVVLGAA
IFAGKX

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD152 (SSD152Q) /CSM/SS/SSD1-C/SSD152Q.Seq.d/                       1088   0.0
SHL161 (SHL161Q) /CSM/SH/SHL1-C/SHL161Q.Seq.d/                       1088   0.0
SHK734 (SHK734Q) /CSM/SH/SHK7-B/SHK734Q.Seq.d/                       1088   0.0
SHK126 (SHK126Q) /CSM/SH/SHK1-B/SHK126Q.Seq.d/                       1088   0.0
SHG811 (SHG811Q) /CSM/SH/SHG8-A/SHG811Q.Seq.d/                       1088   0.0
SHG610 (SHG610Q) /CSM/SH/SHG6-A/SHG610Q.Seq.d/                       1088   0.0
SHG518 (SHG518Q) /CSM/SH/SHG5-A/SHG518Q.Seq.d/                       1088   0.0
SHG146 (SHG146Q) /CSM/SH/SHG1-B/SHG146Q.Seq.d/                       1088   0.0
SHG135 (SHG135Q) /CSM/SH/SHG1-B/SHG135Q.Seq.d/                       1088   0.0
SHF677 (SHF677Q) /CSM/SH/SHF6-D/SHF677Q.Seq.d/                       1088   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    66   1e-06  1
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    42   0.003  4
CX053834|CX053834.1 UCRCS09_8E08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-8E08-I15-1-5.g, mRNA sequence.    50   0.067  1
CC946427|CC946427.1 BOIFV20TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFV20, genomic survey sequence.    50   0.067  1
CC075688|CC075688.1 CSU-K33r.25G4.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.25G4, DNA sequence.    50   0.067  1
BH960705|BH960705.1 odd88f07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    50   0.067  1
AR549621|AR549621.1 Sequence 4752 from patent US 6747137.          46   0.30   2
AL287678|AL287678.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 105D19 of library G from Tetraodon nigroviridis.    38   0.91   2
CX118034|CX118034.1 EI112L19 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone EI112L19 5', mRNA sequence.    46   1.1    1
CB652801|CB652801.1 OSJNEc03D04.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA clone OSJNEc03D04 5', mRNA sequence.    46   1.1    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                348   1e-94
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   153   5e-36
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   150   4e-35
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   140   5e-32
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                130   5e-29
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                110   3e-23
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 97   4e-19
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    72   2e-11
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    68   3e-10
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    66   1e-09

 psg: 0.12  gvh: 0.38  alm: 0.16  top: 0.67  tms: 0.07  mit: 0.19  mip: 0.00
 nuc: 0.40  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHR663 is cyt

>CHR663F.Seq
GTATGATTATTATAATTCAAATTAAAAATATATTATATAAATATATATAAATATATATTA
AATAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAGAAAAAAAAAA
AANTAAAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAAANCCNAAAAAAAAAANCCCNNN
AAAAAAANNNNNNNNNN

>CHR663Z.Seq
NNNNNNNNNNGTAAATGTGTAGCTCAAGATTCTCATTGTGATGATGGTAATCCATGTACT
GATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAAGTTGGTCAATGCACT
CAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTACAGTTGTACCTTG
GAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGGT
TATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGTAT
TGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTCGATAGAAGATGTGCT
CCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAAAT
GATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTGCT
TTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAGGTGCT
GCTATATTTGCGGGTAAGNAAG

>CHR663P.Seq
GTATGATTATTATAATTCAAATTAAAAATATATTATATAAATATATATAAATATATATTA
AATAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAGAAAAAAAAAA
AANTAAAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAAANCCNAAAAAAAAAANCCCNNN
AAAAAAA----------GTAAATGTGTAGCTCAAGATTCTCATTGTGATGATGGTAATCC
ATGTACTGATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAAGTTGGTCA
ATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTACAGTTG
TACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAA
AATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGA
TTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTCGATAGAAG
ATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGG
TAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAA
AGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTT
AGGTGCTGCTATATTTGCGGGTAAGNAAG