CHR659
Library CH
(Link to library)
Clone ID CHR659
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15684-1
Original site URL
Representative seq. ID CHR659P
(Link to Original site)
Representative DNA sequence
>CHR659 (CHR659Q) /CSM/CH/CHR6-C/CHR659Q.Seq.d/
ATTATTAAATTTATTTTGTAATATTAAAAAAATAAAATAAAATAAAAAAAAGATGTCATG
GGCTAGAAATATTCAATCTAGAATCCAACAACAACAACAGTTACAAAAACCAGGTGGTTT
AGCACCACCATCTGGTAATGAAACACCACAAAAACAACCATCATCACCAACATTATCAGC
TTTATCATCACCAATAACTTCTTTAACAAATGCATTAAGAGGTAGTGGTGGTATATCACA
ACCAACTACAAATACAACATCTTTAACATCAACATCACCACCATCACCAACTATATCAAC
AACAACAACACAAGTTAAAGTTGGCCAAACATCATTCACAACATCAACAAATTTACAAGC
TGCTGCATCTGGTAATAATTTACAAGCGAGTATTCAAACAACAAATATAACAGTTACATC
ACCTTCAATGGCAAGTCCAATTGGTACATCAACAGGTATACAAAATCCAAATGCTAAACC
AAGTTCATTACCATCACCATCACAATCACCAATGCAAACTAGAAATACTTCTGCCCCAAC
TAATAATAATAATAATAATAATACTGCTACTACTACTACTCCTACTACTACTACTACTAC
TACCACTACTACCACTACTACCACTACTACCACTACTACACCATCAACATCTACTACAAC
TACACCAACAACATCATCATCAXXXXXXXXXXTAAATAAATATATCGAATTACCAATGAT
TCCATCATCATCATCNAATGTTGANACCAAATCAATTCAAGATTCAATNTCACAATTGTT
TAGAGTGGTTTTATCAATTAATCAAATTGTTGGTCAAATTCAATCAATGTTTCAAGTGTT
TGTCTTACCACATATTCAAACTTCAATGATTGTTCAATCACAATGTTCCGATCAATTATA
TTTTAATATCTCCTCATTAGAGAATACCATAAATACAGGTCTTGAAAATTCATTANCAAC
CATGATACAATTAATAGAGAAAACTTTACTTCCACAAGGTAGAAATGATTATTTAATCGA
TGATTATGACAATTCTGTAACCGATACTTGTGCTTCTGTTATCAAGTTAATTCAATCGTT
TTATGATATGGCCAAAATTNATTTACAAGGTAAAAACTTTCATATCTATGTCGAAGAGTT
GGGTTTAAAATCTCAATTCGTCNTTATCAATCATTTTAAGAAATTTAAAATCGGTCAAGG
TATTGGTACTNTAAAGTTAATGAGAGATTTAACCGAATATAGAAATCTATCAAAACAATT
CAAAAGTCAAAAAGTTGATGATGCTTTCGAATTATTATTTGAAATTTCAAAAGTACATCT
TGTTAATCCTGAAAACTTCTAAATTGGTAATTGAAGGTGGTGCTTTANCTAGAATGTCAA
AACAAGATTTAATAATTTTCATTAAACAAC
sequence update 2002.10.25
Translated Amino Acid sequence
llnlfcnikkik*NKKKMSWARNIQSRIQQQQQLQKPGGLAPPSGNETPQKQPSSPTLSA
LSSPITSLTNALRGSGGISQPTTNTTSLTSTSPPSPTISTTTTQVKVGQTSFTTSTNLQA
AASGNNLQASIQTTNITVTSPSMASPIGTSTGIQNPNAKPSSLPSPSQSPMQTRNTSAPT
NNNNNNNTATTTTPTTTTTTTTTTTTTTTTTTTPSTSTTTTPTTSSS---

---NKYIELPMIPSSSSNVXTKSIQDSXSQLFRVVLSINQIVGQIQSMFQVFVLPHIQTS
MIVQSQCSDQLYFNISSLENTINTGLENSLXTMIQLIEKTLLPQGRNDYLIDDYDNSVTD
TCASVIKLIQSFYDMAKIXLQGKNFHIYVEELGLKSQFVXINHFKKFKIGQGIGTXKLMR
DLTEYRNLSKQFKSQKVDDAFELLFEISKVHLVNPENF*ign*rwcfx*nvktrfnnfh*
t


Translated Amino Acid sequence (All Frames)
Frame A:
iikfil*y*knkik*kkdvmg*kysi*npttttvtktrwfsttiw**nttkttiitniis
fiitnnffnkcikr*wwyittnykynifninittitnyinnnnts*swpniihninkfts
cciw**ftseysnnkynsyitfngksnwyinrytkskc*tkfititititnan*kyfcpn
*******ycyyyysyyyyyyyhyyhyyhyyhyytiniyynytnniii---

---*inisnyq*fhhhhxmlxpnqfkiqxhnclewfyqlikllvkfnqcfkclsyhifkl
q*lfnhnvpinyilisph*rip*iqvlkihxqp*yn**rklyfhkvemii*smimtil*p
ilvlllss*fnrfmiwpkxiykvktfismskswv*nlnsslsiilrnlksvkvlvl*s**
ei*pnieiyqnnskvkklmmlsnyylkfqkyillilktsklvieggalxrmskqdliifi
kq

Frame B:
llnlfcnikkik*NKKKMSWARNIQSRIQQQQQLQKPGGLAPPSGNETPQKQPSSPTLSA
LSSPITSLTNALRGSGGISQPTTNTTSLTSTSPPSPTISTTTTQVKVGQTSFTTSTNLQA
AASGNNLQASIQTTNITVTSPSMASPIGTSTGIQNPNAKPSSLPSPSQSPMQTRNTSAPT
NNNNNNNTATTTTPTTTTTTTTTTTTTTTTTTTPSTSTTTTPTTSSS---

---k*iyritndsiiiixc*xqinsrfnxtiv*sgfin*sncwsnsinvssvclttysnf
ndcsitmfrsiif*yllireyhkyrs*kfixnhdtinrenftstr*k*lfnr*l*qfcnr
ylcfcyqvnsivl*ygqnxftr*klsylcrrvgfkisirxyqsf*ei*nrsrywyxkvne
rfnri*ksiktiqksks**cfriii*nfkstsc*s*kllnw*lkvvlxlecqnki**fsl
nn

Frame C:
y*iyfvilkk*nkikkrchgleifnlesnnnnsyknqvv*hhhlvmkhhknnhhhqhyql
yhhq*ll*qmh*evvvvyhnqlqiqhl*hqhhhhhqlyqqqqhklklakhhsqhqqiykl
lhlviiykrvfkqqi*qlhhlqwqvqlvhqqvykiqmlnqvhyhhhhnhqckleillpql
iiiiiiilllllllllllllpllpllpllpllhhqhllqlhqqhhh---

---NKYIELPMIPSSSSNVXTKSIQDSXSQLFRVVLSINQIVGQIQSMFQVFVLPHIQTS
MIVQSQCSDQLYFNISSLENTINTGLENSLXTMIQLIEKTLLPQGRNDYLIDDYDNSVTD
TCASVIKLIQSFYDMAKIXLQGKNFHIYVEELGLKSQFVXINHFKKFKIGQGIGTXKLMR
DLTEYRNLSKQFKSQKVDDAFELLFEISKVHLVNPENF*ign*rwcfx*nvktrfnnfh*
t

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR659 (CHR659Q) /CSM/CH/CHR6-C/CHR659Q.Seq.d/ 1421 0.0
VHI623 (VHI623Q) /CSM/VH/VHI6-A/VHI623Q.Seq.d/ 1352 0.0
SHF337 (SHF337Q) /CSM/SH/SHF3-B/SHF337Q.Seq.d/ 1352 0.0
SHC603 (SHC603Q) /CSM/SH/SHC6-A/SHC603Q.Seq.d/ 1352 0.0
SHA296 (SHA296Q) /CSM/SH/SHA2-D/SHA296Q.Seq.d/ 1352 0.0
CHE709 (CHE709Q) /CSM/CH/CHE7-A/CHE709Q.Seq.d/ 1352 0.0
AHR371 (AHR371Q) /CSM/AH/AHR3-C/AHR371Q.Seq.d/ 1352 0.0
VHO680 (VHO680Q) /CSM/VH/VHO6-D/VHO680Q.Seq.d/ 1348 0.0
AHM183 (AHM183Q) /CSM/AH/AHM1-D/AHM183Q.Seq.d/ 1346 0.0
AHA257 (AHA257Q) /CSM/AH/AHA2-C/AHA257Q.Seq.d/ 1344 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC114261|AC114261.2 Dictyostelium discoideum chromosome 2 map 126059-159710 strain AX4, complete sequence. 50 2e-10 9
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 52 2e-09 12
G67741|G67741.1 D4Mon22 RPCI-23 mouse BAC clone 118E21 Mus musculus STS genomic, sequence tagged site. 38 7e-06 3
BZ259263|BZ259263.1 CH230-253M19.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-253M19, DNA sequence. 38 9e-06 4
BZ254273|BZ254273.1 CH230-402H7.TV CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-402H7, DNA sequence. 38 1e-05 4
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 50 2e-05 7
DQ121034|DQ121034.1 Hucho taimen clone ZA-30 microsatellite sequence. 36 2e-05 5
AY160094|AY160094.1 Dictyostelium discoideum nucleotide exchange factor RasGEF E (gefE) gene, complete cds. 50 2e-05 4
AY232272|AY232272.1 Dictyostelium discoideum putative protein Roco10 (roco10) gene, complete cds. 36 3e-05 7
AY428796|AY428796.1 Dictyostelium discoideum DIF insensitive mutant A (dimA) gene, complete cds. 38 3e-05 5
dna update 2005.11.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC137821_17(AC137821|pid:none) Medicago truncatula clone mth2-15... 70 2e-10
(Q2QV94) RecName: Full=Exocyst complex component 5; AltName: Ful... 66 3e-09
AF479280_1(AF479280|pid:none) Arabidopsis thaliana SEC10 (SEC10)... 64 1e-08
AY810377_1(AY810377|pid:none) Schistosoma japonicum SJCHGC02526 ... 63 2e-08
BC041126_1(BC041126|pid:none) Homo sapiens exocyst complex compo... 62 4e-08
(O00471) RecName: Full=Exocyst complex component 5; AltName: Ful... 61 8e-08
(P97878) RecName: Full=Exocyst complex component 5; AltName: Ful... 61 8e-08
AK303531_1(AK303531|pid:none) Homo sapiens cDNA FLJ54264 complet... 61 8e-08
AK157473_1(AK157473|pid:none) Mus musculus activated spleen cDNA... 61 1e-07
CR855575_1(CR855575|pid:none) Xenopus tropicalis finished cDNA, ... 61 1e-07
protein update 2009. 4.13
PSORT

psg: 0.52 gvh: 0.56 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.39
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: mitochondrial
24.0 %: cytoplasmic
24.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for CHR659 is mit

5' end seq. ID CHR659F
5' end seq.
>CHR659F.Seq
ATTATTAAATTTATTTTGTAATATTAAAAAAATAAAATAAAATAAAAAAAAGATGTCATG
GGCTAGAAATATTCAATCTAGAATCCAACAACAACAACAGTTACAAAAACCAGGTGGTTT
AGCACCACCATCTGGTAATGAAACACCACAAAAACAACCATCATCACCAACATTATCAGC
TTTATCATCACCAATAACTTCTTTAACAAATGCATTAAGAGGTAGTGGTGGTATATCACA
ACCAACTACAAATACAACATCTTTAACATCAACATCACCACCATCACCAACTATATCAAC
AACAACAACACAAGTTAAAGTTGGCCAAACATCATTCACAACATCAACAAATTTACAAGC
TGCTGCATCTGGTAATAATTTACAAGCGAGTATTCAAACAACAAATATAACAGTTACATC
ACCTTCAATGGCAAGTCCAATTGGTACATCAACAGGTATACAAAATCCAAATGCTAAACC
AAGTTCATTACCATCACCATCACAATCACCAATGCAAACTAGAAATACTTCTGCCCCAAC
TAATAATAATAATAATAATAATACTGCTACTACTACTACTCCTACTACTACTACTACTAC
TACCACTACTACCACTACTACCACTACTACCACTACTACACCATCAACATCTACTACAAC
TACACCAACAACATCATCATCANNNNNNNNNN
Length of 5' end seq. 692
3' end seq. ID CHR659Z
3' end seq.
>CHR659Z.Seq
NNNNNNNNNNTAAATAAATATATCGAATTACCAATGATTCCATCATCATCATCNAATGTT
GANACCAAATCAATTCAAGATTCAATNTCACAATTGTTTAGAGTGGTTTTATCAATTAAT
CAAATTGTTGGTCAAATTCAATCAATGTTTCAAGTGTTTGTCTTACCACATATTCAAACT
TCAATGATTGTTCAATCACAATGTTCCGATCAATTATATTTTAATATCTCCTCATTAGAG
AATACCATAAATACAGGTCTTGAAAATTCATTANCAACCATGATACAATTAATAGAGAAA
ACTTTACTTCCACAAGGTAGAAATGATTATTTAATCGATGATTATGACAATTCTGTAACC
GATACTTGTGCTTCTGTTATCAAGTTAATTCAATCGTTTTATGATATGGCCAAAATTNAT
TTACAAGGTAAAAACTTTCATATCTATGTCGAAGAGTTGGGTTTAAAATCTCAATTCGTC
NTTATCAATCATTTTAAGAAATTTAAAATCGGTCAAGGTATTGGTACTNTAAAGTTAATG
AGAGATTTAACCGAATATAGAAATCTATCAAAACAATTCAAAAGTCAAAAAGTTGATGAT
GCTTTCGAATTATTATTTGAAATTTCAAAAGTACATCTTGTTAATCCTGAAAACTTCTAA
ATTGGTAATTGAAGGTGGTGCTTTANCTAGAATGTCAAAACAAGATTTAATAATTTTCAT
TAAACAAC
Length of 3' end seq. 728
Connected seq. ID CHR659P
Connected seq.
>CHR659P.Seq
ATTATTAAATTTATTTTGTAATATTAAAAAAATAAAATAAAATAAAAAAAAGATGTCATG
GGCTAGAAATATTCAATCTAGAATCCAACAACAACAACAGTTACAAAAACCAGGTGGTTT
AGCACCACCATCTGGTAATGAAACACCACAAAAACAACCATCATCACCAACATTATCAGC
TTTATCATCACCAATAACTTCTTTAACAAATGCATTAAGAGGTAGTGGTGGTATATCACA
ACCAACTACAAATACAACATCTTTAACATCAACATCACCACCATCACCAACTATATCAAC
AACAACAACACAAGTTAAAGTTGGCCAAACATCATTCACAACATCAACAAATTTACAAGC
TGCTGCATCTGGTAATAATTTACAAGCGAGTATTCAAACAACAAATATAACAGTTACATC
ACCTTCAATGGCAAGTCCAATTGGTACATCAACAGGTATACAAAATCCAAATGCTAAACC
AAGTTCATTACCATCACCATCACAATCACCAATGCAAACTAGAAATACTTCTGCCCCAAC
TAATAATAATAATAATAATAATACTGCTACTACTACTACTCCTACTACTACTACTACTAC
TACCACTACTACCACTACTACCACTACTACCACTACTACACCATCAACATCTACTACAAC
TACACCAACAACATCATCATCA----------TAAATAAATATATCGAATTACCAATGAT
TCCATCATCATCATCNAATGTTGANACCAAATCAATTCAAGATTCAATNTCACAATTGTT
TAGAGTGGTTTTATCAATTAATCAAATTGTTGGTCAAATTCAATCAATGTTTCAAGTGTT
TGTCTTACCACATATTCAAACTTCAATGATTGTTCAATCACAATGTTCCGATCAATTATA
TTTTAATATCTCCTCATTAGAGAATACCATAAATACAGGTCTTGAAAATTCATTANCAAC
CATGATACAATTAATAGAGAAAACTTTACTTCCACAAGGTAGAAATGATTATTTAATCGA
TGATTATGACAATTCTGTAACCGATACTTGTGCTTCTGTTATCAAGTTAATTCAATCGTT
TTATGATATGGCCAAAATTNATTTACAAGGTAAAAACTTTCATATCTATGTCGAAGAGTT
GGGTTTAAAATCTCAATTCGTCNTTATCAATCATTTTAAGAAATTTAAAATCGGTCAAGG
TATTGGTACTNTAAAGTTAATGAGAGATTTAACCGAATATAGAAATCTATCAAAACAATT
CAAAAGTCAAAAAGTTGATGATGCTTTCGAATTATTATTTGAAATTTCAAAAGTACATCT
TGTTAATCCTGAAAACTTCTAAATTGGTAATTGAAGGTGGTGCTTTANCTAGAATGTCAA
AACAAGATTTAATAATTTTCATTAAACAAC
Length of connected seq. 1400
Full length Seq ID -
Full length Seq. -
Length of full length seq. -