>CHR651 (CHR651Q) /CSM/CH/CHR6-C/CHR651Q.Seq.d/
XXXXXXXXXXTTTCACTTCCTATAGCTATATGNAGCAAATCGTATCGGTTTGGAATGAAA
TGGGTCTGTTAAATAATATTCTAACCAATAAGTTAATATTTGTTGAAACTTCAGATCCTG
CCGAATCAGCATTGGCATTGCAAAACTACAAGAAAGCATGCGACAGTGGTAGAGGTGCCG
TACTACTTTCAGTGGCAAGAGGTAAGGTGTCTGAGGGTATCGATTTCGATAATCAGTATG
GCAGATGCGTCATTCTCTATGGCATACCTTACATCAATACCGAGAGTAAGGTATTACGTG
CACGTTTGGAATTCCTTAGAGATCGTTATCAAATTAGAGAGAATGAATTCCTAACTTTTG
ATGCAATGAGAACTGCTTCTCAATGTGTTGGTAGAGTCATTCGTGGTAAATCCGATTATG
GTATCATGATCTTTGCTGATAAACGTTACAATCGTTTAGATAAACGTAATAAATTACCAC
AATGGATCTTACAATTTTGTCAACCTCAACATTTAAATCTTTCAACTGATATGGCAATTT
CACTTTCAAAAACTTTTTTAAGAGAAATGGGTCAACCATTTTCAAGAGAAGAACAATTAG
GTAAATCATTATGGAGTTTAGAACATGTTGAAAAACAATCAACAAGTAAACCACCACAAC
AACAAAATTCAGCTATAAATTCAACTATTACAACTTCTACTACTACTACAACCACGACTT
C

---FTSYSYMXQIVSVWNEMGLLNNILTNKLIFVETSDPAESALALQNYKKACDSGRGAV
LLSVARGKVSEGIDFDNQYGRCVILYGIPYINTESKVLRARLEFLRDRYQIRENEFLTFD
AMRTASQCVGRVIRGKSDYGIMIFADKRYNRLDKRNKLPQWILQFCQPQHLNLSTDMAIS
LSKTFLREMGQPFSREEQLGKSLWSLEHVEKQSTSKPPQQQNSAINSTITTSTTTTTTT

Frame A:
---FTSYSYMXQIVSVWNEMGLLNNILTNKLIFVETSDPAESALALQNYKKACDSGRGAV
LLSVARGKVSEGIDFDNQYGRCVILYGIPYINTESKVLRARLEFLRDRYQIRENEFLTFD
AMRTASQCVGRVIRGKSDYGIMIFADKRYNRLDKRNKLPQWILQFCQPQHLNLSTDMAIS
LSKTFLREMGQPFSREEQLGKSLWSLEHVEKQSTSKPPQQQNSAINSTITTSTTTTTTT


Frame B:
---slpiaixsksyrfgmkwvc*iif*pis*yllklqilpnqhwhckttrkhatvvevpy
yfqwqevrclrvsisiismadasfsmayltsiprvryyvhvwnsleiviklermns*llm
q*elllnvlvesfvvnpimvs*sllinvtiv*invinyhngsynfvnlni*ifqliwqfh
fqklf*ekwvnhfqeknn*vnhygv*nmlknnqqvnhhnnkiql*iqllqlllllqprl


Frame C:
---hfl*lyxanrigle*ngsvk*ysnq*vnic*nfrscrisigiaklqesmrqw*rcrt
tfsgkr*gv*gyrfr*svwqmrhslwhtlhqyre*gitctfgip*rslsn*re*ipnf*c
nencfsmcw*shsw*irlwyhdlc**tlqsfr*t**ittmdltilststfksfn*ygnft
fknffkrngstifkrrtir*iimefrtc*ktink*tttttkfsykfnyynfyyyynhdf

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHC393 (VHC393Q) /CSM/VH/VHC3-D/VHC393Q.Seq.d/                       1403   0.0
VHB116 (VHB116Q) /CSM/VH/VHB1-A/VHB116Q.Seq.d/                       1403   0.0
VHA271 (VHA271Q) /CSM/VH/VHA2-C/VHA271Q.Seq.d/                       1403   0.0
CHR651 (CHR651Q) /CSM/CH/CHR6-C/CHR651Q.Seq.d/                       1403   0.0
CHF863 (CHF863Q) /CSM/CH/CHF8-C/CHF863Q.Seq.d/                       1403   0.0
AHF812 (AHF812Q) /CSM/AH/AHF8-A/AHF812Q.Seq.d/                       1403   0.0
AFM169 (AFM169Q) /CSM/AF/AFM1-C/AFM169Q.Seq.d/                       1403   0.0
AFD323 (AFD323Q) /CSM/AF/AFD3-A/AFD323Q.Seq.d/                       1403   0.0
CHI534 (CHI534Q) /CSM/CH/CHI5-B/CHI534Q.Seq.d/                       1396   0.0
AHK619 (AHK619Q) /CSM/AH/AHK6-A/AHK619Q.Seq.d/                       1396   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U77066|U77066.1 Dictyostelium discoideum DNA helicase homolog (repD) gene, complete cds.  1403   0.0    1
CR382139|CR382139.1 Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii.    66   1e-06  1
CF638930|CF638930.1 D08_G08 Filamentous Forced Diploid Ustilago maydis cDNA 3', mRNA sequence.    58   3e-04  1
CV699156|CV699156.1 SJS_043_42.T7 SJS Schistosoma japonicum cDNA, mRNA sequence.    44   4e-04  3
DT730544|DT730544.1 EST1164394 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1SY95, mRNA sequence.    42   0.003  2
DR946815|DR946815.1 EST1138354 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1R135, mRNA sequence.    42   0.004  2
CV738886|CV738886.1 SJAL_017_30.T7 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   0.011  2
AF251284|AF251284.1 Plasmodium falciparum RAD3-like DNA helicase (rad3) gene, complete cds.    52   0.014  2
AC168827|AC168827.2 Strongylocentrotus purpuratus clone R3-13E10, WORKING DRAFT SEQUENCE, 30 unordered pieces.    52   0.016  1
AL929359|AL929359.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5.    52   0.016  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55G81) RecName: Full=TFIIH basal transcription factor complex ...   446   e-124
AY092780_1(AY092780|pid:none) Homo sapiens excision repair cross...   280   4e-74
(O08811) RecName: Full=TFIIH basal transcription factor complex ...   279   7e-74
AK082761_1(AK082761|pid:none) Mus musculus ES cells cDNA, RIKEN ...   278   9e-74
AK004652_1(AK004652|pid:none) Mus musculus adult male lung cDNA,...   278   9e-74
AK130849_1(AK130849|pid:none) Homo sapiens cDNA FLJ27339 fis, cl...   278   1e-73
AB170535_1(AB170535|pid:none) Macaca fascicularis brain cDNA clo...   278   1e-73
BC110522_1(BC110522|pid:none) Homo sapiens excision repair cross...   278   1e-73
BC110523_1(BC110523|pid:none) Homo sapiens excision repair cross...   278   1e-73
I51720(I51720;A56748) probable DNA helicase ERCC2/XPD - southern...   278   2e-73

 psg: 0.86  gvh: 0.41  alm: 0.46  top: 0.47  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHR651 is cyt

>CHR651Z.Seq
NNNNNNNNNNTTTCACTTCCTATAGCTATATGNAGCAAATCGTATCGGTTTGGAATGAAA
TGGGTCTGTTAAATAATATTCTAACCAATAAGTTAATATTTGTTGAAACTTCAGATCCTG
CCGAATCAGCATTGGCATTGCAAAACTACAAGAAAGCATGCGACAGTGGTAGAGGTGCCG
TACTACTTTCAGTGGCAAGAGGTAAGGTGTCTGAGGGTATCGATTTCGATAATCAGTATG
GCAGATGCGTCATTCTCTATGGCATACCTTACATCAATACCGAGAGTAAGGTATTACGTG
CACGTTTGGAATTCCTTAGAGATCGTTATCAAATTAGAGAGAATGAATTCCTAACTTTTG
ATGCAATGAGAACTGCTTCTCAATGTGTTGGTAGAGTCATTCGTGGTAAATCCGATTATG
GTATCATGATCTTTGCTGATAAACGTTACAATCGTTTAGATAAACGTAATAAATTACCAC
AATGGATCTTACAATTTTGTCAACCTCAACATTTAAATCTTTCAACTGATATGGCAATTT
CACTTTCAAAAACTTTTTTAAGAGAAATGGGTCAACCATTTTCAAGAGAAGAACAATTAG
GTAAATCATTATGGAGTTTAGAACATGTTGAAAAACAATCAACAAGTAAACCACCACAAC
AACAAAATTCAGCTATAAATTCAACTATTACAACTTCTACTACTACTACAACCACGACTT
C