>CHR644 (CHR644Q) /CSM/CH/CHR6-B/CHR644Q.Seq.d/
XXXXXXXXXXTGAAAAAGGAAGAAGATGAAGATAATTTAATGAGAGCAACNTATGGTGCA
CAATGGCACAGAACTCCATCNTATACATTGACTGCAAATCTAACTCAAGATTATGCAAAG
TATACAAGTCATTTACAACATTCCACTAAATCTGATAGTTTTATTAGAAAGAAATTTGAA
GATCATAAAAATTCAATTCAAGAATTAGAGAATCAAACAGAGATCATTGCATTGTTACCA
ACCAATAATTTACCATCGGGTAAAATAGCAGAGATTGCATCGTTGACAGTGTTGATGAAC
GATTTGGATGCTTTGATGGCCAATAGAGAATCGATAGCAGAGAAACTAAAGAATCTTTGC
AAGAAGGATGATATCACTTTGAAACTTTTATCACCTCAAAAGGATAAATCTTTAATTTAC
GCAGAGGAAATCCAAAAATACGAACCACTTCAAATGTCTTTGAATGAGAGTTTCTTGAAA
CAACAAAAACTCATTGAAGATATTAGAAAAGAGAATGAGAAATTCACAAATCAAAAATCA
AAACAAGGTAATCAAAGAGAGGAAATCCTTCAAAAGTATGCAAATGCTTACAAAGTNTAC
AATGAGTTAAAGGCAAA

---KKEEDEDNLMRATYGAQWHRTPSYTLTANLTQDYAKYTSHLQHSTKSDSFIRKKFED
HKNSIQELENQTEIIALLPTNNLPSGKIAEIASLTVLMNDLDALMANRESIAEKLKNLCK
KDDITLKLLSPQKDKSLIYAEEIQKYEPLQMSLNESFLKQQKLIEDIRKENEKFTNQKSK
QGNQREEILQKYANAYKVYNELKA

Frame A:
---ekgrr*r*fnesnxwctmaqnsixyidcksnsrlckvyksfttfh*i**fy*kei*r
s*kfnsriresnrdhcivtnq*ftig*nsrdcivdsvderfgcfdgq*ridsretkeslq
eg*yhfetfitskg*ifnlrrgnpkirttsnvfe*eflettkth*ry*kre*eihkskik
tr*skrgnpskvckclqsxq*vkgk


Frame B:
---KKEEDEDNLMRATYGAQWHRTPSYTLTANLTQDYAKYTSHLQHSTKSDSFIRKKFED
HKNSIQELENQTEIIALLPTNNLPSGKIAEIASLTVLMNDLDALMANRESIAEKLKNLCK
KDDITLKLLSPQKDKSLIYAEEIQKYEPLQMSLNESFLKQQKLIEDIRKENEKFTNQKSK
QGNQREEILQKYANAYKVYNELKA


Frame C:
---krkkmkii**eqxmvhngtelhxih*lqi*lkimqsiqviyniplnlivllernlki
ikiqfkn*rikqrslhcyqpiiyhrvk*qrlhr*qc**tiwml*wpienr*qrn*rifar
rmisl*nfyhlkrinl*ftqrkskntnhfkcl*mrvs*nnknslkilekrmrnsqiknqn
kvikerksfksmqmltkxtms*rq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR644 (CHR644Q) /CSM/CH/CHR6-B/CHR644Q.Seq.d/                       1185   0.0
VFO167 (VFO167Q) /CSM/VF/VFO1-C/VFO167Q.Seq.d/                        466   e-130
VHI762 (VHI762Q) /CSM/VH/VHI7-C/VHI762Q.Seq.d/                        396   e-109
SFE487 (SFE487Q) /CSM/SF/SFE4-D/SFE487Q.Seq.d/                         38   0.15
CHQ457 (CHQ457Q) /CSM/CH/CHQ4-C/CHQ457Q.Seq.d/                         38   0.15
SSK416 (SSK416Q) /CSM/SS/SSK4-A/SSK416Q.Seq.d/                         36   0.61
SSI714 (SSI714Q) /CSM/SS/SSI7-A/SSI714Q.Seq.d/                         36   0.61
SSI713 (SSI713Q) /CSM/SS/SSI7-A/SSI713Q.Seq.d/                         36   0.61
SSI163 (SSI163Q) /CSM/SS/SSI1-C/SSI163Q.Seq.d/                         36   0.61
SSH341 (SSH341Q) /CSM/SS/SSH3-B/SSH341Q.Seq.d/                         36   0.61

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.  1185   0.0    1
AF360741|AF360741.1 Dictyostelium discoideum ALG-2 interacting protein X (alx) gene, complete cds.  1185   0.0    1
DU493104|DU493104.1 1098415727216 CHORI-243 Ovis aries genomic clone CH243-335I21, genomic survey sequence.    54   0.004  1
CR831056|CR831056.1 GR0AAA63CD08FM1 INRA BAC Bos taurus genomic clone INRAb_294D12, DNA sequence.    54   0.004  1
DU080020|DU080020.1 55377 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0074J17 5, genomic survey sequence.    34   0.18   3
CE248491|CE248491.1 tigr-gss-dog-17000335422026 Dog Library Canis familiaris genomic, genomic survey sequence.    42   0.28   2
CE289638|CE289638.1 tigr-gss-dog-17000333838157 Dog Library Canis familiaris genomic, genomic survey sequence.    42   0.33   2
CE336138|CE336138.1 tigr-gss-dog-17000334037705 Dog Library Canis familiaris genomic, genomic survey sequence.    42   0.34   2
CE415630|CE415630.1 tigr-gss-dog-17000362595816 Dog Library Canis familiaris genomic, genomic survey sequence.    42   0.38   2
CE089810|CE089810.1 tigr-gss-dog-17000359433054 Dog Library Canis familiaris genomic, genomic survey sequence.    42   0.38   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116551_8(AC116551|pid:none) Dictyostelium discoideum chromosom...   397   e-109
(Q9WU78) RecName: Full=Programmed cell death 6-interacting prote...    87   5e-16
BC051123_1(BC051123|pid:none) Mus musculus programmed cell death...    86   6e-16
BC026823_1(BC026823|pid:none) Mus musculus programmed cell death...    86   6e-16
AK129340_1(AK129340|pid:none) Mus musculus mRNA for mKIAA1375 pr...    86   6e-16
AF119955_1(AF119955|pid:none) Mus musculus ALG-2 interacting pro...    85   1e-15
BT066551_1(BT066551|pid:none) Zea mays full-length cDNA clone ZM...    85   1e-15
AB120526_1(AB120526|pid:none) Nicotiana tabacum HMA9 mRNA for AL...    85   2e-15
AE014297_4340(AE014297|pid:none) Drosophila melanogaster chromos...    84   3e-15
AC068950_5(AC068950|pid:none) Oryza sativa chromosome 10 BAC OSJ...    83   5e-15

 psg: 0.75  gvh: 0.36  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHR644 is cyt

>CHR644Z.Seq
NNNNNNNNNNTGAAAAAGGAAGAAGATGAAGATAATTTAATGAGAGCAACNTATGGTGCA
CAATGGCACAGAACTCCATCNTATACATTGACTGCAAATCTAACTCAAGATTATGCAAAG
TATACAAGTCATTTACAACATTCCACTAAATCTGATAGTTTTATTAGAAAGAAATTTGAA
GATCATAAAAATTCAATTCAAGAATTAGAGAATCAAACAGAGATCATTGCATTGTTACCA
ACCAATAATTTACCATCGGGTAAAATAGCAGAGATTGCATCGTTGACAGTGTTGATGAAC
GATTTGGATGCTTTGATGGCCAATAGAGAATCGATAGCAGAGAAACTAAAGAATCTTTGC
AAGAAGGATGATATCACTTTGAAACTTTTATCACCTCAAAAGGATAAATCTTTAATTTAC
GCAGAGGAAATCCAAAAATACGAACCACTTCAAATGTCTTTGAATGAGAGTTTCTTGAAA
CAACAAAAACTCATTGAAGATATTAGAAAAGAGAATGAGAAATTCACAAATCAAAAATCA
AAACAAGGTAATCAAAGAGAGGAAATCCTTCAAAAGTATGCAAATGCTTACAAAGTNTAC
AATGAGTTAAAGGCAAA