CHR636
Library CH
(Link to library)
Clone ID CHR636
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11262-1
Original site URL
Representative seq. ID CHR636P
(Link to Original site)
Representative DNA sequence
>CHR636 (CHR636Q) /CSM/CH/CHR6-B/CHR636Q.Seq.d/
ATTTTATAAAAAACAAAACAAAACAAAAATAAAAAAAAATACACTCAAATATTATTTATT
TATTTATTTATTAATAATTAACAAATGGGAGACCATTTAAAAAATACAAGAGAATGGATA
AGACATTCATCAAATAAAGACGATGGTAATAATGCAGAAAAAACTCACTTTTTTGGTCAT
CACGAAGAAGAAGATCATGAACATATGTTATTTACCAAAGAAGAATTAACAAATCCAAAA
GAATTGGCTAAAGCAATGAAAGTTAAAATTCCACTTTATGTACCAATTTTTAATTGGATT
AAATCATATTCAAAAGAAGATTTAATTGGTGATATATTATCATCAATTACAGTAGCAACA
ATGTTAGTACCACAAGGTTTAGCATATGCAGTATTAGCAGGATTACCAGCTATTTATGGT
TTATATAGTGGTTGGTTACCATTGGTTATCTATTCATTTATGGGTGGATGTAAACAATTA
GCCGTTGGACCAGAAGCATTATTATCAGTATTATTGGGATCAATTTTAGGAGGTTATACA
ACACCACCAGAGGATATGACTTTAAATGATTATTTAGTATCAATTGCATTAACATTGGCA
TTATTAGTTGGTXXXXXXXXXXTGTTCCAGGGACCAATCGTTTCAAAGATGTCGCTAAAT
TCCCAGAAGCTGAACCAATTGAAGGTATTTTATTAGTTCGTATCGATGAAGTACTCTACT
TTGCAAATATTGGTCAATTCAAACAATTACTCTCAGAGATTGAACGTATGATGGATAGAT
CAACCAATGTAACCGGTAGTGGTTCTACTCCACTTCAATCAATCATTATCAATGTTGTCA
ATATTCCTGTAATGGATGCTTCTGCTCTACTAACTATTGAAGAGATGGTTACTGCCTATC
ATAAACGTAATGTAAAGGTTGCCTTTGTTCAAATGAGTGAAAAGATTAAGGAATCTTTCA
AACAATCTGGTCTTTACGATATTGTAACACCTCAATTCATTTTCGATAGTAATTATGAAG
CTGTCTCATTCTTGGAACAAAGTATAAACTATAGTAATAATAATGATTCAAGACAAGTAA
ACTTAAATATGCCACAAAGTGATCAATCTTATGATGATTTAAATAATAATGAGGTTGGTG
GTTTTGATCAACCATCTTCTTCATCATCTTCACGTTTTAATAATCAAAATTTTTTAAACA
AAAATAATGATAATAATAATAATAATAATAATAATAACAATGATAATAATATTAACGATG
ATGATTATCAAAATTCTTATAATAATAATAATAATAATGGTGGTGGTGCAATCCTTTCTG
ATGGTTTAAAATTAGAGGATTACAGTGAACCAGAATNCTGAGAATTCATTCAAAGTTCAA
ATCAAAAATCAAAGAAATAATA
sequence update 2002.10.25
Translated Amino Acid sequence
il*ktkqnknkkkytqilfiylfinn*QMGDHLKNTREWIRHSSNKDDGNNAEKTHFFGH
HEEEDHEHMLFTKEELTNPKELAKAMKVKIPLYVPIFNWIKSYSKEDLIGDILSSITVAT
MLVPQGLAYAVLAGLPAIYGLYSGWLPLVIYSFMGGCKQLAVGPEALLSVLLGSILGGYT
TPPEDMTLNDYLVSIALTLALLVG---

---VPGTNRFKDVAKFPEAEPIEGILLVRIDEVLYFANIGQFKQLLSEIERMMDRSTNVT
GSGSTPLQSIIINVVNIPVMDASALLTIEEMVTAYHKRNVKVAFVQMSEKIKESFKQSGL
YDIVTPQFIFDSNYEAVSFLEQSINYSNNNDSRQVNLNMPQSDQSYDDLNNNEVGGFDQP
SSSSSSRFNNQNFLNKNNDNNNNNNNNNNDNNINDDDYQNSYNNNNNNGGGAILSDGLKL
EDYSEPEX*efiqssnqkskk*


Translated Amino Acid sequence (All Frames)
Frame A:
il*ktkqnknkkkytqilfiylfinn*QMGDHLKNTREWIRHSSNKDDGNNAEKTHFFGH
HEEEDHEHMLFTKEELTNPKELAKAMKVKIPLYVPIFNWIKSYSKEDLIGDILSSITVAT
MLVPQGLAYAVLAGLPAIYGLYSGWLPLVIYSFMGGCKQLAVGPEALLSVLLGSILGGYT
TPPEDMTLNDYLVSIALTLALLVG---

---csrdqsfqrcr*iprs*tn*ryfissyr*stllckywsiqtitlrd*tydg*inqcn
r*wfystsinhyqccqyscngcfcstny*rdgycls*t*ckgclcsne*kd*gifqtiws
lrycntsihfr**l*sclilgtkykl*****fktsklkyatk*sil**fk***gwwf*st
iffiiftf**skffkqk***********q***y*r**lskfl******wwwcnpf*wfki
rglq*trxlrihskfkskikeii

Frame B:
fykkqnktkikkntlkyylfiylliinkweti*kiqeng*dihqiktmvimqkkltflvi
tkkkimnicylpkkn*qiqknwlkq*klkfhfmyqfliglnhiqkki*lviyyhqlq*qq
c*yhkv*hmqy*qdyqlfmvyivvgyhwlsihlwvdvnn*pldqkhyyqyywdqf*eviq
hhqri*l*mii*yqlh*hwhy*l---

---VPGTNRFKDVAKFPEAEPIEGILLVRIDEVLYFANIGQFKQLLSEIERMMDRSTNVT
GSGSTPLQSIIINVVNIPVMDASALLTIEEMVTAYHKRNVKVAFVQMSEKIKESFKQSGL
YDIVTPQFIFDSNYEAVSFLEQSINYSNNNDSRQVNLNMPQSDQSYDDLNNNEVGGFDQP
SSSSSSRFNNQNFLNKNNDNNNNNNNNNNDNNINDDDYQNSYNNNNNNGGGAILSDGLKL
EDYSEPEX*efiqssnqkskk*

Frame C:
fiknktkqk*kkihsniiylfiy**ltngrpfkkykrmdktfik*rrw**crknslfwss
rrrrs*tyviyqrrinkskrig*snes*nstlctnf*ld*iifkrrfnw*yiiinyssnn
vsttrfsicsisritsylwfi*wlvtigylfiygwm*tisrwtrsiiisiiginfrrlyn
ttrgydfk*lfsincinigiisw---

---fqgpivskmslnsqklnqlkvfy*fvsmkystlqilvnsnnysqrlnv*widqpm*p
vvvllhfnqslsmlsifl*wmllly*llkrwllpiinvm*rlplfk*vkrlrnlsnnlvf
til*hlnsfsivimklshswnkv*tiviimiqdk*t*ichkvinlmmi*iimrlvvlinh
llhhlhvliikif*tkimiiiiiiiiitmiiiltmmiikiliiiiiimvvvqsflmv*n*
ritvnqnxensfkvqiknqrnn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR636 (CHR636Q) /CSM/CH/CHR6-B/CHR636Q.Seq.d/ 2121 0.0
AHM343 (AHM343Q) /CSM/AH/AHM3-B/AHM343Q.Seq.d/ 1086 0.0
AHD276 (AHD276Q) /CSM/AH/AHD2-D/AHD276Q.Seq.d/ 1084 0.0
VHI482 (VHI482Q) /CSM/VH/VHI4-D/VHI482Q.Seq.d/ 1076 0.0
VHP484 (VHP484Q) /CSM/VH/VHP4-D/VHP484Q.Seq.d/ 1070 0.0
AHI857 (AHI857Q) /CSM/AH/AHI8-C/AHI857Q.Seq.d/ 1068 0.0
CHI591 (CHI591Q) /CSM/CH/CHI5-D/CHI591Q.Seq.d/ 1059 0.0
CHS119 (CHS119Q) /CSM/CH/CHS1-A/CHS119Q.Seq.d/ 1039 0.0
CHG649 (CHG649Q) /CSM/CH/CHG6-C/CHG649Q.Seq.d/ 991 0.0
CHL772 (CHL772Q) /CSM/CH/CHL7-C/CHL772Q.Seq.d/ 946 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC137838|AC137838.40 Medicago truncatula clone mth2-34l12, complete sequence. 34 0.059 9
AL953914|AL953914.11 Zebrafish DNA sequence from clone CH211-235I18 in linkage group 8. 48 0.50 1
CO165293|CO165293.1 FLD1_53_C12.g1_A029 Root flooded Pinus taeda cDNA clone FLD1_53_C12_A029 5', mRNA sequence. 46 2.0 1
CO165215|CO165215.1 FLD1_53_C12.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_53_C12_A029 3', mRNA sequence. 46 2.0 1
AC170911|AC170911.2 Mus musculus chromosome 3 clone RP23-199D18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces. 46 2.0 1
AC159164|AC159164.3 Atelerix albiventris clone LB4-453G7, WORKING DRAFT SEQUENCE, 8 ordered pieces. 46 2.0 1
AM024281|AM024281.1 Bos taurus 3' EST, clone C0007398b08. 46 2.0 1
AC107428|AC107428.5 Rattus norvegicus clone CH230-127P16, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 46 2.0 1
BX971867|BX971867.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN386m02. 46 2.0 1
AC144540|AC144540.6 Medicago truncatula clone mth2-19p16, complete sequence. 46 2.0 1
dna update 2005.11.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000749_3181(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 87 1e-15
CP000031_1918(CP000031|pid:none) Silicibacter pomeroyi DSS-3, co... 86 4e-15
CP000159_2186(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 86 4e-15
CP000749_3891(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 84 9e-15
(Q9FY46) RecName: Full=Sulfate transporter 4.1, chloroplastic; A... 84 1e-14
AK119047_1(AK119047|pid:none) Arabidopsis thaliana At5g13550 mRN... 84 1e-14
AB008782_1(AB008782|pid:none) Arabidopsis thaliana mRNA for sulf... 84 1e-14
AJ416461_1(AJ416461|pid:none) Brassica napus partial mRNA for su... 84 1e-14
AP008215_97(AP008215|pid:none) Oryza sativa (japonica cultivar-g... 83 2e-14
DQ275146_5(DQ275146|pid:none) Boechera stricta At3g12480-like pr... 82 4e-14
protein update 2009. 4.13
PSORT

psg: 0.52 gvh: 0.26 alm: 0.28 top: 0.60 tms: 0.27 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

40.0 %: plasma membrane
20.0 %: endoplasmic reticulum
16.0 %: vacuolar
12.0 %: nuclear
8.0 %: mitochondrial
4.0 %: Golgi

>> prediction for CHR636 is pla

5' end seq. ID CHR636F
5' end seq.
>CHR636F.Seq
ATTTTATAAAAAACAAAACAAAACAAAAATAAAAAAAAATACACTCAAATATTATTTATT
TATTTATTTATTAATAATTAACAAATGGGAGACCATTTAAAAAATACAAGAGAATGGATA
AGACATTCATCAAATAAAGACGATGGTAATAATGCAGAAAAAACTCACTTTTTTGGTCAT
CACGAAGAAGAAGATCATGAACATATGTTATTTACCAAAGAAGAATTAACAAATCCAAAA
GAATTGGCTAAAGCAATGAAAGTTAAAATTCCACTTTATGTACCAATTTTTAATTGGATT
AAATCATATTCAAAAGAAGATTTAATTGGTGATATATTATCATCAATTACAGTAGCAACA
ATGTTAGTACCACAAGGTTTAGCATATGCAGTATTAGCAGGATTACCAGCTATTTATGGT
TTATATAGTGGTTGGTTACCATTGGTTATCTATTCATTTATGGGTGGATGTAAACAATTA
GCCGTTGGACCAGAAGCATTATTATCAGTATTATTGGGATCAATTTTAGGAGGTTATACA
ACACCACCAGAGGATATGACTTTAAATGATTATTTAGTATCAATTGCATTAACATTGGCA
TTATTAGTTGGTNNNNNNNNNN
Length of 5' end seq. 622
3' end seq. ID CHR636Z
3' end seq.
>CHR636Z.Seq
NNNNNNNNNNTGTTCCAGGGACCAATCGTTTCAAAGATGTCGCTAAATTCCCAGAAGCTG
AACCAATTGAAGGTATTTTATTAGTTCGTATCGATGAAGTACTCTACTTTGCAAATATTG
GTCAATTCAAACAATTACTCTCAGAGATTGAACGTATGATGGATAGATCAACCAATGTAA
CCGGTAGTGGTTCTACTCCACTTCAATCAATCATTATCAATGTTGTCAATATTCCTGTAA
TGGATGCTTCTGCTCTACTAACTATTGAAGAGATGGTTACTGCCTATCATAAACGTAATG
TAAAGGTTGCCTTTGTTCAAATGAGTGAAAAGATTAAGGAATCTTTCAAACAATCTGGTC
TTTACGATATTGTAACACCTCAATTCATTTTCGATAGTAATTATGAAGCTGTCTCATTCT
TGGAACAAAGTATAAACTATAGTAATAATAATGATTCAAGACAAGTAAACTTAAATATGC
CACAAAGTGATCAATCTTATGATGATTTAAATAATAATGAGGTTGGTGGTTTTGATCAAC
CATCTTCTTCATCATCTTCACGTTTTAATAATCAAAATTTTTTAAACAAAAATAATGATA
ATAATAATAATAATAATAATAATAACAATGATAATAATATTAACGATGATGATTATCAAA
ATTCTTATAATAATAATAATAATAATGGTGGTGGTGCAATCCTTTCTGATGGTTTAAAAT
TAGAGGATTACAGTGAACCAGAATNCTGAGAATTCATTCAAAGTTCAAATCAAAAATCAA
AGAAATAATA
Length of 3' end seq. 790
Connected seq. ID CHR636P
Connected seq.
>CHR636P.Seq
ATTTTATAAAAAACAAAACAAAACAAAAATAAAAAAAAATACACTCAAATATTATTTATT
TATTTATTTATTAATAATTAACAAATGGGAGACCATTTAAAAAATACAAGAGAATGGATA
AGACATTCATCAAATAAAGACGATGGTAATAATGCAGAAAAAACTCACTTTTTTGGTCAT
CACGAAGAAGAAGATCATGAACATATGTTATTTACCAAAGAAGAATTAACAAATCCAAAA
GAATTGGCTAAAGCAATGAAAGTTAAAATTCCACTTTATGTACCAATTTTTAATTGGATT
AAATCATATTCAAAAGAAGATTTAATTGGTGATATATTATCATCAATTACAGTAGCAACA
ATGTTAGTACCACAAGGTTTAGCATATGCAGTATTAGCAGGATTACCAGCTATTTATGGT
TTATATAGTGGTTGGTTACCATTGGTTATCTATTCATTTATGGGTGGATGTAAACAATTA
GCCGTTGGACCAGAAGCATTATTATCAGTATTATTGGGATCAATTTTAGGAGGTTATACA
ACACCACCAGAGGATATGACTTTAAATGATTATTTAGTATCAATTGCATTAACATTGGCA
TTATTAGTTGGT----------TGTTCCAGGGACCAATCGTTTCAAAGATGTCGCTAAAT
TCCCAGAAGCTGAACCAATTGAAGGTATTTTATTAGTTCGTATCGATGAAGTACTCTACT
TTGCAAATATTGGTCAATTCAAACAATTACTCTCAGAGATTGAACGTATGATGGATAGAT
CAACCAATGTAACCGGTAGTGGTTCTACTCCACTTCAATCAATCATTATCAATGTTGTCA
ATATTCCTGTAATGGATGCTTCTGCTCTACTAACTATTGAAGAGATGGTTACTGCCTATC
ATAAACGTAATGTAAAGGTTGCCTTTGTTCAAATGAGTGAAAAGATTAAGGAATCTTTCA
AACAATCTGGTCTTTACGATATTGTAACACCTCAATTCATTTTCGATAGTAATTATGAAG
CTGTCTCATTCTTGGAACAAAGTATAAACTATAGTAATAATAATGATTCAAGACAAGTAA
ACTTAAATATGCCACAAAGTGATCAATCTTATGATGATTTAAATAATAATGAGGTTGGTG
GTTTTGATCAACCATCTTCTTCATCATCTTCACGTTTTAATAATCAAAATTTTTTAAACA
AAAATAATGATAATAATAATAATAATAATAATAATAACAATGATAATAATATTAACGATG
ATGATTATCAAAATTCTTATAATAATAATAATAATAATGGTGGTGGTGCAATCCTTTCTG
ATGGTTTAAAATTAGAGGATTACAGTGAACCAGAATNCTGAGAATTCATTCAAAGTTCAA
ATCAAAAATCAAAGAAATAATA
Length of connected seq. 1392
Full length Seq ID -
Full length Seq. -
Length of full length seq. -