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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR632
Library CH
(Link to library)
Clone ID CHR632
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16475-1|Contig-U16524-1
Original site URL
Representative seq. ID CHR632P
(Link to Original site)
Representative DNA sequence 
>CHR632 (CHR632Q) /CSM/CH/CHR6-B/CHR632Q.Seq.d/
ATTAATTTTTGTATGATTATTATAATTCAAATTAAAAATATATTATATAAATATATATAA
ATATATATTAAATAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAG
AAAAAAAAAAANTAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAACCCNAAAAAAAAAAN
CCCNNNAAAAAAAXXXXXXXXXXTGTTAAGACTGGTAAATGTGTAGCTCAAGATTCTCAT
TGTGATGATGGTAATCCATGTACTGATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCC
AATAGCCAAGTTGGTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAA
TGTATGGTTTACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCA
AACTCTGGTGCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGAT
AGAGTTTGTTCTTCCGATTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGC
ATTCAATTCGATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTA
AACAATACTGCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAA
CCATTTGTTTGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTA
GTTGGTGCTGTTGTTTTAGGTGCTGCTATA
sequence update 2002.10.25
Translated Amino Acid sequence 
lifv*ll*fklkiyyiniykyilnknnnkinli**KIFLRKKKXKKKKKKKNPKNPKKKX
PXKK---

---VKTGKCVAQDSHCDDGNPCTDNACVASANSTANSQVGQCTQTPTAKCDLGDKCMVYS
CTLEGGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDR
RCAPDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVVVGAVV
LGAAI
Translated Amino Acid sequence (All Frames) 
Frame A:
infcmiiiiqiknilykyi*iyik*k***nkfniiknffekkkx*kkkkkkkpxkpxkkx
pxkk---

---c*dw*mcssrfsl**w*smy**clcrfs**yrq*pswsmhsnsnc*m*fg**myglq
lylgrwl*cnstclsklwcl*nwll*twfrl*ikg*slffrlvly*ssm*ckiwlhsir*
kmcs****msrrclckqycyr*k*wkmyf*rl*skticlskscfsfnccyckcccswccc
frccy

Frame B:
lifv*ll*fklkiyyiniykyilnknnnkinli**KIFLRKKKXKKKKKKKNPKNPKKKX
PXKK---

---VKTGKCVAQDSHCDDGNPCTDNACVASANSTANSQVGQCTQTPTAKCDLGDKCMVYS
CTLEGGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDR
RCAPDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVVVGAVV
LGAAI

Frame C:
*flydyynsn*kyii*iyiniy*ikiiik*i*ynkkff*ekkkxkkkkkkktxktxkkkx
xxk---

---lrlvnv*lkilivmmvihvlimlvslqlivppiaklvnalklqllnviwvinvwftv
vpwkvvvmqlnvfvqtlvlvklvivnlvsvvn*riefvlpigivlklnvmqnmvafnsie
dvlliivnvkkvsv*tillsvkmmenvflkimiqnhlfvkkll*fqllllqvll*lvllf
*vll
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD152 (SSD152Q) /CSM/SS/SSD1-C/SSD152Q.Seq.d/                       1084   0.0
SHL665 (SHL665Q) /CSM/SH/SHL6-C/SHL665Q.Seq.d/                       1084   0.0
SHL544 (SHL544Q) /CSM/SH/SHL5-B/SHL544Q.Seq.d/                       1084   0.0
SHK812 (SHK812Q) /CSM/SH/SHK8-A/SHK812Q.Seq.d/                       1084   0.0
SHK734 (SHK734Q) /CSM/SH/SHK7-B/SHK734Q.Seq.d/                       1084   0.0
SHK126 (SHK126Q) /CSM/SH/SHK1-B/SHK126Q.Seq.d/                       1084   0.0
SHJ710 (SHJ710Q) /CSM/SH/SHJ7-A/SHJ710Q.Seq.d/                       1084   0.0
SHG811 (SHG811Q) /CSM/SH/SHG8-A/SHG811Q.Seq.d/                       1084   0.0
SHG692 (SHG692Q) /CSM/SH/SHG6-D/SHG692Q.Seq.d/                       1084   0.0
SHG615 (SHG615Q) /CSM/SH/SHG6-A/SHG615Q.Seq.d/                       1084   0.0
own update 2002.10. 5
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    66   1e-06  1
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    42   0.003  4
CX053834|CX053834.1 UCRCS09_8E08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-8E08-I15-1-5.g, mRNA sequence.    50   0.067  1
CC946427|CC946427.1 BOIFV20TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFV20, genomic survey sequence.    50   0.067  1
CC075688|CC075688.1 CSU-K33r.25G4.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.25G4, DNA sequence.    50   0.067  1
BH960705|BH960705.1 odd88f07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    50   0.067  1
AR549621|AR549621.1 Sequence 4752 from patent US 6747137.          46   0.30   2
AL287678|AL287678.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 105D19 of library G from Tetraodon nigroviridis.    38   0.91   2
CX118034|CX118034.1 EI112L19 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone EI112L19 5', mRNA sequence.    46   1.1    1
CB652801|CB652801.1 OSJNEc03D04.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA clone OSJNEc03D04 5', mRNA sequence.    46   1.1    1
dna update 2005.11.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                355   6e-97
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   155   1e-36
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   152   1e-35
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   142   8e-33
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                134   3e-30
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                115   2e-24
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                100   6e-20
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    73   1e-11
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    69   1e-10
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    67   6e-10
protein update 2009. 4.13
PSORT 

 psg: 0.16  gvh: 0.35  alm: 0.16  top: 0.60  tms: 0.07  mit: 0.35  mip: 0.02
 nuc: 0.56  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHR632 is cyt
5' end seq. ID CHR632F
5' end seq. 
>CHR632F.Seq
ATTAATTTTTGTATGATTATTATAATTCAAATTAAAAATATATTATATAAATATATATAA
ATATATATTAAATAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAG
AAAAAAAAAAANTAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAACCCNAAAAAAAAAAN
CCCNNNAAAAAAANNNNNNNNNN
Length of 5' end seq. 203
3' end seq. ID CHR632Z
3' end seq. 
>CHR632Z.Seq
NNNNNNNNNNTGTTAAGACTGGTAAATGTGTAGCTCAAGATTCTCATTGTGATGATGGTA
ATCCATGTACTGATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAAGTTG
GTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTACA
GTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTT
GTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTT
CCGATTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTCGATA
GAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTA
TCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTC
AAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTG
TTTTAGGTGCTGCTATA
Length of 3' end seq. 557
Connected seq. ID CHR632P
Connected seq. 
>CHR632P.Seq
ATTAATTTTTGTATGATTATTATAATTCAAATTAAAAATATATTATATAAATATATATAA
ATATATATTAAATAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAG
AAAAAAAAAAANTAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAACCCNAAAAAAAAAAN
CCCNNNAAAAAAA----------TGTTAAGACTGGTAAATGTGTAGCTCAAGATTCTCAT
TGTGATGATGGTAATCCATGTACTGATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCC
AATAGCCAAGTTGGTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAA
TGTATGGTTTACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCA
AACTCTGGTGCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGAT
AGAGTTTGTTCTTCCGATTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGC
ATTCAATTCGATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTA
AACAATACTGCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAA
CCATTTGTTTGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTA
GTTGGTGCTGTTGTTTTAGGTGCTGCTATA
Length of connected seq. 740
Full length Seq ID -
Full length Seq. -
Length of full length seq. -