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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR619
Library CH
(Link to library)
Clone ID CHR619
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16419-1
Original site URL
Representative seq. ID CHR619P
(Link to Original site)
Representative DNA sequence 
>CHR619 (CHR619Q) /CSM/CH/CHR6-A/CHR619Q.Seq.d/
AAGTTAAAAATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTT
ATGATATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAA
GAATGTCATAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAA
AAATGGGCTTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGA
AATTCATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTT
ATTAAAATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCC
TTATTAGGTAAATCATGTAGTTTCCAAAAGAACTCTTGTTCAAATCCAACTTCCTGTTGC
CCAGGTGAATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTGGTGGTTCA
TCAGGTGGTACATCAGGTGGTAGTTCATCAGGTGGTACATCAGGTGGTAGTTCATCAGGT
GGTACATCAGGGTAGTTCATCAAGTGGTAGTTCATCAGGGTGGTGTAAGTTTCATGGTTC
AACTACACATTGTCCANAANGTTATNCATTGTTCAATGGNAAAAGATGTTGCAACTTGTC
CTTGCCATCAACAACTGGTGGAACAGGTTTACCAGGAACCCAGTTCATCAACTGCTGGTG
TATCATCATGTTTAACAACCCTTATGTCCANTTGGCATATTTGTGTAAAAGATAGTAATG
GCGGTAAATTGGGTCCNAATGGANGGANGTNCTTCAGGCGGTAGTTCATCANCAAGTACA
TCAGGXXXXXXXXXXCCATGAATGTATAGTTGATCNCAATNGTAAAGAATGTTGGGTNAG
ATCCCNTAGACCGCCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAATG
TANNTTTGATGATCATGGTAAAAAATGTTGTGTAAAGATTCATTGNGATGAAGTTTGTGA
TTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTANACATGATGGTTCNNAATGTTGTGT
CCGTTCAGAAAGACCACACCCACCACAACATGAANNATGTAATAANAGATGCCCNCCAGG
CCATGNATGTAAAGTTGATCNACATGNAAAAGAATGANGCGTTGTTGCCCATAGACCACC
ACCAAAATGNTCTTTAAGATGTNCANCAAGACATGAATGTAGAGTCANCCACTTNGGTGA
AGAATGTTGTGTTANAGNTNNCNACGATNAATGTTCNTTCAGATGTCCNCCAGGCCATGN
ATGTAAAGTTGATCCACATGGAAAAGAATGNTGNGTTGTTGCCCATAGACCACCNCCAAA
ATGATCATTAANATGTCCGNCAAAACATGAATGTAGAATCAATCANTTTGGTGAAGAATG
NTGTGTTA
sequence update 2002.10.25
Translated Amino Acid sequence 
klkikk**rmlflknigvffmiflvsksyatdcnkitneeechkssecivinytpccgeq
kwacskgtfdtctyenscyrnssnnqvvevsnkcfnldgfikittpteyscsdakikeca
llgkscsfqknscsnptsccpgesiceglssgsstsgggssggtsggsssggtsggsssg
gtsg*fikw*firvv*vswfnytlsxxlxivqwxkmlqlvlainnwwnrftrnpvhqllv
yhhv*qplcpxgifv*KIVMAVNWVXMXGXXSGGSSSXSTS---

---HECIVDXNXKECWVRSXRPPPPEVCSLRCPPKHECXFDDHGKKCCVKIHXDEVCDLD
CGRGFECKIXHDGSXCCVRSERPHPPQHEXCNXRCPPGHXCKVDXHXKE*xvvahrpppk
xslrcxxrhecrvxhxgeeccvxxxxdxcsfrcppghxckvdphgkexxvvahrpppk*s
lxcpxkhecrinxfgeexcv
Translated Amino Acid sequence (All Frames) 
Frame A:
klkikk**rmlflknigvffmiflvsksyatdcnkitneeechkssecivinytpccgeq
kwacskgtfdtctyenscyrnssnnqvvevsnkcfnldgfikittpteyscsdakikeca
llgkscsfqknscsnptsccpgesiceglssgsstsgggssggtsggsssggtsggsssg
gtsg*fikw*firvv*vswfnytlsxxlxivqwxkmlqlvlainnwwnrftrnpvhqllv
yhhv*qplcpxgifv*KIVMAVNWVXMXGXXSGGSSSXSTS---

---p*mys*sqx*rmlgxip*tattrslfikmptkt*mxx**sw*kmlckdslx*sl*fr
lw*rf*m*nxt*wfxmlcpfrkttpttt*xm**xmpxrpxm*s*stxkrmxrccp*tttk
mxfkmxxkt*m*sxplx*rmlcxxxxrxmfxqmsxrpxm*s*stwkrmxxccp*ttxkmi
ixmsxkt*m*nqsxw*rmxc

Frame B:
s*k*knnkgccf*kileyfl*yslyqnpmrrivikllmkknvinlrnvll*iihhvvvnk
nglalkvhlilvhmkivvieihpitkllkyqinasilmdllklqlqpsilvlmprlknvp
y*vnhvvskrtlvqiqlpvaqvnqfvkv*alvvqhlvvvhqvvhqvvvhqvvhqvvvhqv
vhqgssssgsssgwckfhgstthcpxxyxlfngkrccnlslpsttggtglpgtqfincwc
iimfnnpyvxlaylckr**wr*igsxwxxvlqavvhxqvhq---

---HECIVDXNXKECWVRSXRPPPPEVCSLRCPPKHECXFDDHGKKCCVKIHXDEVCDLD
CGRGFECKIXHDGSXCCVRSERPHPPQHEXCNXRCPPGHXCKVDXHXKE*xvvahrpppk
xslrcxxrhecrvxhxgeeccvxxxxdxcsfrcppghxckvdphgkexxvvahrpppk*s
lxcpxkhecrinxfgeexcv

Frame C:
vknkkiikdvvskkywsifydipcikilcdgl**ny**rrms*ifgmycyklytmlw*tk
mgll*ryi*ylyi*k*ll*kfiq*psc*sik*mlqs*wiy*nynsnrvflf*cqd*rmcl
ir*im*fpkellfksnfllpr*inl*rfklw*fniwwwfirwyirw*firwyirw*firw
yirvvhqvvvhqggvsfmvqlhivxxvxhcsmxkdvatcpchqqlveqvyqepssstagv
ssclttlmsxwhicvkdsnggklgpngxxxfrr*fixkyir---

---mnv*lixxvknvgxdpxdrhhqkfvh*dahqnmnvxlmimvknvv*rfixmkfvi*i
vvevlnvklxmmvxnvvsvqkdhthhnmxxvixdaxqamxvklixmxknxallpidhhqn
xl*dvxqdmnvesxtxvknvvlxxxtxnvxsdvxqamxvklihmeknxxllpidhxqndh
*xvrqnmnvesixlvknxvl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR619 (CHR619Q) /CSM/CH/CHR6-A/CHR619Q.Seq.d/                       1473   0.0
CHQ692 (CHQ692Q) /CSM/CH/CHQ6-D/CHQ692Q.Seq.d/                        890   0.0
SLG501 (SLG501Q) /CSM/SL/SLG5-A/SLG501Q.Seq.d/                        888   0.0
SFL250 (SFL250Q) /CSM/SF/SFL2-C/SFL250Q.Seq.d/                        888   0.0
SFK426 (SFK426Q) /CSM/SF/SFK4-B/SFK426Q.Seq.d/                        888   0.0
SFK212 (SFK212Q) /CSM/SF/SFK2-A/SFK212Q.Seq.d/                        888   0.0
SFJ633 (SFJ633Q) /CSM/SF/SFJ6-B/SFJ633Q.Seq.d/                        888   0.0
SFH201 (SFH201Q) /CSM/SF/SFH2-A/SFH201Q.Seq.d/                        888   0.0
SFH185 (SFH185Q) /CSM/SF/SFH1-D/SFH185Q.Seq.d/                        888   0.0
SFG663 (SFG663Q) /CSM/SF/SFG6-C/SFG663Q.Seq.d/                        888   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.   880   0.0    14
U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.   880   0.0    14
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    54   0.006  2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    54   0.008  1
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    54   0.008  1
CP000076|CP000076.1 Pseudomonas fluorescens Pf-5, complete genome.    42   0.88   2
BU140295|BU140295.1 603133335F1 CSEQCHL24 Gallus gallus cDNA clone ChEST113f10 5', mRNA sequence.    46   2.1    1
CP000077|CP000077.1 Sulfolobus acidocaldarius DSM 639, complete genome.    46   2.1    1
AC120760|AC120760.4 Rattus norvegicus clone CH230-71L4, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    44   8.1    1
AC113634|AC113634.5 Rattus norvegicus clone CH230-352H6, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44   8.1    1
dna update 2005.11.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   367   e-100
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   149   2e-34
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName...   106   2e-21
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...    97   1e-18
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    60   2e-07
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        52   7e-05
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    48   7e-04
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region...    42   0.040
BT071595_1(BT071595|pid:none) Picea sitchensis clone WS02926_J21...    41   0.090
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    41   0.090
protein update 2009. 4.13
PSORT 

 psg: 0.89  gvh: 0.60  alm: 0.47  top: 0.37  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: extracellular, including cell wall
	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHR619 is exc
5' end seq. ID CHR619F
5' end seq. 
>CHR619F.Seq
AAGTTAAAAATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTT
ATGATATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAA
GAATGTCATAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAA
AAATGGGCTTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGA
AATTCATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTT
ATTAAAATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCC
TTATTAGGTAAATCATGTAGTTTCCAAAAGAACTCTTGTTCAAATCCAACTTCCTGTTGC
CCAGGTGAATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTGGTGGTTCA
TCAGGTGGTACATCAGGTGGTAGTTCATCAGGTGGTACATCAGGTGGTAGTTCATCAGGT
GGTACATCAGGGTAGTTCATCAAGTGGTAGTTCATCAGGGTGGTGTAAGTTTCATGGTTC
AACTACACATTGTCCANAANGTTATNCATTGTTCAATGGNAAAAGATGTTGCAACTTGTC
CTTGCCATCAACAACTGGTGGAACAGGTTTACCAGGAACCCAGTTCATCAACTGCTGGTG
TATCATCATGTTTAACAACCCTTATGTCCANTTGGCATATTTGTGTAAAAGATAGTAATG
GCGGTAAATTGGGTCCNAATGGANGGANGTNCTTCAGGCGGTAGTTCATCANCAAGTACA
TCAGGNNNNNNNNNN
Length of 5' end seq. 855
3' end seq. ID CHR619Z
3' end seq. 
>CHR619Z.Seq
NNNNNNNNNNCCATGAATGTATAGTTGATCNCAATNGTAAAGAATGTTGGGTNAGATCCC
NTAGACCGCCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAATGTANNT
TTGATGATCATGGTAAAAAATGTTGTGTAAAGATTCATTGNGATGAAGTTTGTGATTTAG
ATTGTGGTAGAGGTTTTGAATGTAAAATTANACATGATGGTTCNNAATGTTGTGTCCGTT
CAGAAAGACCACACCCACCACAACATGAANNATGTAATAANAGATGCCCNCCAGGCCATG
NATGTAAAGTTGATCNACATGNAAAAGAATGANGCGTTGTTGCCCATAGACCACCACCAA
AATGNTCTTTAAGATGTNCANCAAGACATGAATGTAGAGTCANCCACTTNGGTGAAGAAT
GTTGTGTTANAGNTNNCNACGATNAATGTTCNTTCAGATGTCCNCCAGGCCATGNATGTA
AAGTTGATCCACATGGAAAAGAATGNTGNGTTGTTGCCCATAGACCACCNCCAAAATGAT
CATTAANATGTCCGNCAAAACATGAATGTAGAATCAATCANTTTGGTGAAGAATGNTGTG
TTA
Length of 3' end seq. 603
Connected seq. ID CHR619P
Connected seq. 
>CHR619P.Seq
AAGTTAAAAATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTT
ATGATATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAA
GAATGTCATAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAA
AAATGGGCTTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGA
AATTCATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTT
ATTAAAATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCC
TTATTAGGTAAATCATGTAGTTTCCAAAAGAACTCTTGTTCAAATCCAACTTCCTGTTGC
CCAGGTGAATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTGGTGGTTCA
TCAGGTGGTACATCAGGTGGTAGTTCATCAGGTGGTACATCAGGTGGTAGTTCATCAGGT
GGTACATCAGGGTAGTTCATCAAGTGGTAGTTCATCAGGGTGGTGTAAGTTTCATGGTTC
AACTACACATTGTCCANAANGTTATNCATTGTTCAATGGNAAAAGATGTTGCAACTTGTC
CTTGCCATCAACAACTGGTGGAACAGGTTTACCAGGAACCCAGTTCATCAACTGCTGGTG
TATCATCATGTTTAACAACCCTTATGTCCANTTGGCATATTTGTGTAAAAGATAGTAATG
GCGGTAAATTGGGTCCNAATGGANGGANGTNCTTCAGGCGGTAGTTCATCANCAAGTACA
TCAGG----------CCATGAATGTATAGTTGATCNCAATNGTAAAGAATGTTGGGTNAG
ATCCCNTAGACCGCCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAATG
TANNTTTGATGATCATGGTAAAAAATGTTGTGTAAAGATTCATTGNGATGAAGTTTGTGA
TTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTANACATGATGGTTCNNAATGTTGTGT
CCGTTCAGAAAGACCACACCCACCACAACATGAANNATGTAATAANAGATGCCCNCCAGG
CCATGNATGTAAAGTTGATCNACATGNAAAAGAATGANGCGTTGTTGCCCATAGACCACC
ACCAAAATGNTCTTTAAGATGTNCANCAAGACATGAATGTAGAGTCANCCACTTNGGTGA
AGAATGTTGTGTTANAGNTNNCNACGATNAATGTTCNTTCAGATGTCCNCCAGGCCATGN
ATGTAAAGTTGATCCACATGGAAAAGAATGNTGNGTTGTTGCCCATAGACCACCNCCAAA
ATGATCATTAANATGTCCGNCAAAACATGAATGTAGAATCAATCANTTTGGTGAAGAATG
NTGTGTTA
Length of connected seq. 1438
Full length Seq ID -
Full length Seq. -
Length of full length seq. -