>CHR618 (CHR618Q) /CSM/CH/CHR6-A/CHR618Q.Seq.d/
AATTGTTCACAAACACATTTAACAACCTATTAAAAAAATTTTAAATTTTAAAAATTATAA
TATAAAAAATTTTAATAATAATAATAAAAATAATAATAATAGTAGTGGTACCATTTTAAA
AAAATTTATATTTATTTATTTTATTTCAAATAATTTTTAAAATTTATTTTTTTATTTAAT
TTAATTTTAATTATTTTTAATATTTATTCTAATCTATTACCAATTTTTTTTCTTTGTTAA
ATTAATTTCGAATTTTAATACAGATAAAATACAAATTAAAAAAATAATAAAAAACACAAT
AGGATTAAAAAAAAAAXXXXXXXXXXTGGTGGTATCAATCATAAATCTAAAGATCTTTTA
AAAGAAATAGATAAATATAATTTACAAACCAACAAATACGAACCAATGGTTGCAACATTA
TCAAAACCTAAATATGGTTGTTTAACTTGTTTCGATGGGTCTCGTTATATTTATATCTTT
GGTGGTATTTTCAAATCACTACAATTAAGTAGAGCTTTCATTGAAATTGAAAGATTGGAT
ATCACCACCAATAAATGTGAAATCATATCAAAGTTTCAAGATCCTGATCTTTTAGATTTC
AGTAAAAGCCCATTAATTGC

ivhkhi*qpikkilnfknyniknfnnnnknnnnssgtilkkfifiyfisnnf*nlffyli
*f*LFLIFILIYYQFFFFVKLISNFNTDKIQIKKIIKNTIGLKKK---

---GGINHKSKDLLKEIDKYNLQTNKYEPMVATLSKPKYGCLTCFDGSRYIYIFGGIFKS
LQLSRAFIEIERLDITTNKCEIISKFQDPDLLDFSKSPLI

Frame A:
ncsqthltty*knfkf*kl*ykkf*****k*****wyhfkkiyiylfyfk*flkfiflfn
liliifniysnllpifflc*infef*yr*ntn*knnkkhnrikkk---

---wwyqs*i*rsfkrnr*i*ftnqqirtngcniikt*iwlfnlfrwvslylylwwyfqi
ttik*sfh*n*kigyhhq*m*nhikvsrs*sfrfq*kpinc

Frame B:
ivhkhi*qpikkilnfknyniknfnnnnknnnnssgtilkkfifiyfisnnf*nlffyli
*f*LFLIFILIYYQFFFFVKLISNFNTDKIQIKKIIKNTIGLKKK---

---GGINHKSKDLLKEIDKYNLQTNKYEPMVATLSKPKYGCLTCFDGSRYIYIFGGIFKS
LQLSRAFIEIERLDITTNKCEIISKFQDPDLLDFSKSPLI

Frame C:
lftntfnnllkkf*ilkiii*kiliiiikiiiivvvpf*knlylfilfqiifkiyffi*f
nfnyf*ylf*sitnffslln*friliqikyklkk**ktq*d*kk---

---vvsiinlkif*kk*iniiykptntnqwlqhyqnlnmvv*lvsmglvifislvvfsnh
yn*velslklkdwisppinvksyqsfkilif*isvkah*l

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR618 (CHR618Q) /CSM/CH/CHR6-A/CHR618Q.Seq.d/                        583   e-165
CHG742 (CHG742Q) /CSM/CH/CHG7-B/CHG742Q.Seq.d/                        583   e-165
AHO355 (AHO355Q) /CSM/AH/AHO3-C/AHO355Q.Seq.d/                        583   e-165
AHL309 (AHL309Q) /CSM/AH/AHL3-A/AHL309Q.Seq.d/                        583   e-165
AHK478 (AHK478Q) /CSM/AH/AHK4-D/AHK478Q.Seq.d/                        583   e-165
SHL269 (SHL269Q) /CSM/SH/SHL2-C/SHL269Q.Seq.d/                        569   e-161
SHA430 (SHA430Q) /CSM/SH/SHA4-B/SHA430Q.Seq.d/                        569   e-161
CHP140 (CHP140Q) /CSM/CH/CHP1-B/CHP140Q.Seq.d/                        561   e-159
CHO582 (CHO582Q) /CSM/CH/CHO5-D/CHO582Q.Seq.d/                        502   e-141
AHQ136 (AHQ136Q) /CSM/AH/AHQ1-B/AHQ136Q.Seq.d/                        438   e-122

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE016939|AE016939.1 Bacteroides thetaiotaomicron VPI-5482, section 14 of 21 of the complete genome.    48   0.22   1
AC128482|AC128482.3 Rattus norvegicus clone CH230-42D18, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    46   0.86   1
AC106522|AC106522.5 Rattus norvegicus clone CH230-24A12, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    46   0.86   1
AC098231|AC098231.4 Rattus norvegicus clone CH230-1F12, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    46   0.86   1
AP001309|AP001309.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MUO10.    46   0.86   1
AC020665|AC020665.6 Arabidopsis thaliana chromosome 1 BAC T27F4 genomic sequence, complete sequence.    46   0.86   1
AC005970|AC005970.3 Arabidopsis thaliana chromosome 2 clone T6P5 map mi310, complete sequence.    46   0.86   1
AC154888|AC154888.2 Bos taurus clone CH240-27I5, WORKING DRAFT SEQUENCE, 14 unordered pieces.    32   1.7    2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    42   2.6    7
CK574274|CK574274.1 2454 Plasmodium yoelii liver stage LCM cDNA library Plasmodium yoelii cDNA, mRNA sequence.    44   3.4    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 573,914,473

 psg: 1.01  gvh: 0.35  alm: 0.26  top: 0.67  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.07  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CHR618 is cyt

>CHR618F.Seq
AATTGTTCACAAACACATTTAACAACCTATTAAAAAAATTTTAAATTTTAAAAATTATAA
TATAAAAAATTTTAATAATAATAATAAAAATAATAATAATAGTAGTGGTACCATTTTAAA
AAAATTTATATTTATTTATTTTATTTCAAATAATTTTTAAAATTTATTTTTTTATTTAAT
TTAATTTTAATTATTTTTAATATTTATTCTAATCTATTACCAATTTTTTTTCTTTGTTAA
ATTAATTTCGAATTTTAATACAGATAAAATACAAATTAAAAAAATAATAAAAAACACAAT
AGGATTAAAAAAAAAANNNNNNNNNN

>CHR618Z.Seq
NNNNNNNNNNTGGTGGTATCAATCATAAATCTAAAGATCTTTTAAAAGAAATAGATAAAT
ATAATTTACAAACCAACAAATACGAACCAATGGTTGCAACATTATCAAAACCTAAATATG
GTTGTTTAACTTGTTTCGATGGGTCTCGTTATATTTATATCTTTGGTGGTATTTTCAAAT
CACTACAATTAAGTAGAGCTTTCATTGAAATTGAAAGATTGGATATCACCACCAATAAAT
GTGAAATCATATCAAAGTTTCAAGATCCTGATCTTTTAGATTTCAGTAAAAGCCCATTAA
TTGC

>CHR618P.Seq
AATTGTTCACAAACACATTTAACAACCTATTAAAAAAATTTTAAATTTTAAAAATTATAA
TATAAAAAATTTTAATAATAATAATAAAAATAATAATAATAGTAGTGGTACCATTTTAAA
AAAATTTATATTTATTTATTTTATTTCAAATAATTTTTAAAATTTATTTTTTTATTTAAT
TTAATTTTAATTATTTTTAATATTTATTCTAATCTATTACCAATTTTTTTTCTTTGTTAA
ATTAATTTCGAATTTTAATACAGATAAAATACAAATTAAAAAAATAATAAAAAACACAAT
AGGATTAAAAAAAAAA----------TGGTGGTATCAATCATAAATCTAAAGATCTTTTA
AAAGAAATAGATAAATATAATTTACAAACCAACAAATACGAACCAATGGTTGCAACATTA
TCAAAACCTAAATATGGTTGTTTAACTTGTTTCGATGGGTCTCGTTATATTTATATCTTT
GGTGGTATTTTCAAATCACTACAATTAAGTAGAGCTTTCATTGAAATTGAAAGATTGGAT
ATCACCACCAATAAATGTGAAATCATATCAAAGTTTCAAGATCCTGATCTTTTAGATTTC
AGTAAAAGCCCATTAATTGC