>CHR615 (CHR615Q) /CSM/CH/CHR6-A/CHR615Q.Seq.d/
XXXXXXXXXXCCACCAAAGCCAGTGTCATATAATAAAACCAGTTGTAGTCAATGTCCAAT
TGGTTCATATAGATGTAACCCAAATCCAAATGGTTCAGGTGTAATTTGTGAAACTGATGC
AATTAATTGTAGATTAATAGCTTGTAAAGAAGGTGAATTCTGTATTGACAATATTGAAAA
CACTCCACCAAAATGTTATCCAAAATTATTGTGCAACCTATCAAAAATACCACCTGACTA
TTATTGTATATCTGATGAAATTAGAGGAGGATTCTATGTTAAATATGAATCATATATTGA
TCTTTCATGTGAAACTTTATTATGTGAAGGTGTAAATAGTTATTGTGTTGAAAATGGTGG
TCCAATTTGTAAAACTTGGCCAAATGATACAATTCAATATCAACCAAGTTGTGATAAATG
TCCAAAAGATACAATGAGTTGTACTCCAAATGAAAATAGTAATAATAAAGGTGTAGTTTG
TAGAATTGATCGTCCATCTTGTTCAGTTATTCAATGTCCAGATAATCAATATTGTGT

---PKPVSYNKTSCSQCPIGSYRCNPNPNGSGVICETDAINCRLIACKEGEFCIDNIENT
PPKCYPKLLCNLSKIPPDYYCISDEIRGGFYVKYESYIDLSCETLLCEGVNSYCVENGGP
ICKTWPNDTIQYQPSCDKCPKDTMSCTPNENSNNKGVVCRIDRPSCSVIQCPDNQYC

Frame A:
---hqsqchiikpvvvnvqlvhidvtqiqmvqv*fvklmqlivd**lvkkvnsvltilkt
lhqnviqnycatyqkyhltiivylmkleedsmlnmnhilifhvklyyvkv*ivivlkmvv
qfvklgqmiqfninqvvinvqkiq*vvlqmkiviikv*fvelivhlvqlfnvqiiniv


Frame B:
---tkasvi**nql*smsnwfi*m*pkskwfrcnl*n*cn*l*insl*rr*ily*qy*kh
stkmlskiivqpikntt*lllyi**n*rrilc*i*iiy*sfm*nfim*rck*llc*kwws
nl*nlak*ynsistkl**mskrynelysk*k****rcsl*n*ssilfsysmsr*silc


Frame C:
---PKPVSYNKTSCSQCPIGSYRCNPNPNGSGVICETDAINCRLIACKEGEFCIDNIENT
PPKCYPKLLCNLSKIPPDYYCISDEIRGGFYVKYESYIDLSCETLLCEGVNSYCVENGGP
ICKTWPNDTIQYQPSCDKCPKDTMSCTPNENSNNKGVVCRIDRPSCSVIQCPDNQYC

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR615 (CHR615Q) /CSM/CH/CHR6-A/CHR615Q.Seq.d/                       1045   0.0
CHL405 (CHL405Q) /CSM/CH/CHL4-A/CHL405Q.Seq.d/                       1037   0.0
AHQ770 (AHQ770Q) /CSM/AH/AHQ7-C/AHQ770Q.Seq.d/                       1021   0.0
AHQ559 (AHQ559Q) /CSM/AH/AHQ5-C/AHQ559Q.Seq.d/                        989   0.0
CHJ386 (CHJ386Q) /CSM/CH/CHJ3-D/CHJ386Q.Seq.d/                        954   0.0
CHQ226 (CHQ226Q) /CSM/CH/CHQ2-B/CHQ226Q.Seq.d/                        936   0.0
AHP257 (AHP257Q) /CSM/AH/AHP2-C/AHP257Q.Seq.d/                        892   0.0
SLI252 (SLI252Q) /CSM/SL/SLI2-C/SLI252Q.Seq.d/                        821   0.0
CHK853 (CHK853Q) /CSM/CH/CHK8-C/CHK853Q.Seq.d/                        755   0.0
CHK532 (CHK532Q) /CSM/CH/CHK5-B/CHK532Q.Seq.d/                        737   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BB330572|BB330572.1 Mus musculus 6 days neonate medulla oblongata cDNA, RIKEN full-length enriched library, clone:B730015M22, 3' end partial sequence.    46   0.74   1
AL081517|AL081517.1 Arabidopsis thaliana genome survey sequence SP6 end of BAC F3C15 of  IGF library from strain Columbia of Arabidopsis thaliana.    46   0.74   1
CR762410|CR762410.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-86A11.    36   0.76   3
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    36   1.4    5
AI969696|AI969696.1 wz70e07.x1 NCI_CGAP_Mel15 Homo sapiens cDNA clone IMAGE:2563428 3' similar to gb:J05070 92 KD TYPE V COLLAGENASE PRECURSOR (HUMAN);, mRNA sequence.    44   2.9    1
AR667217|AR667217.1 Sequence 8258 from patent US 6900016.          44   2.9    1
AC160057|AC160057.1 Pan troglodytes chromosome UNKNOWN clone CH251-416M4, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44   2.9    1
AR659747|AR659747.1 Sequence 788 from patent US 6900016.           44   2.9    1
AC149561|AC149561.2 Papio anubis clone RP41-291J17, WORKING DRAFT SEQUENCE, 9 ordered pieces.    44   2.9    1
AC023320|AC023320.2 Homo sapiens chromosome 6 clone RP11-635K5 map 6, WORKING DRAFT SEQUENCE, 35 unordered pieces.    44   2.9    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CT025750_1(CT025750|pid:none) Zebrafish DNA sequence from clone ...    55   1e-06
Y10354_1(Y10354|pid:none) D.rerio notch6 mRNA.                         54   2e-06
(P49013) RecName: Full=Fibropellin-3; AltName: Full=Fibropellin ...    49   1e-04
A35844(A35844)Xotch protein - African clawed frog                      47   3e-04
(P21783) RecName: Full=Neurogenic locus notch protein homolog;  ...    47   3e-04
AB095017_1(AB095017|pid:none) Cynops pyrrhogaster Delta-1 mRNA f...    47   4e-04
M17421_1(M17421|pid:none) Strongylocentrotus purpuratus putative...    47   4e-04
L08692_2(L08692|pid:none) Strongylocentrotus purpuratus fibropel...    47   4e-04
DQ917572_1(DQ917572|pid:none) Parhyale hawaiensis notch protein ...    46   7e-04
(Q04721) RecName: Full=Neurogenic locus notch homolog protein 2;...    46   7e-04

 psg: 0.81  gvh: 0.29  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for CHR615 is cyt

>CHR615Z.Seq
NNNNNNNNNNCCACCAAAGCCAGTGTCATATAATAAAACCAGTTGTAGTCAATGTCCAAT
TGGTTCATATAGATGTAACCCAAATCCAAATGGTTCAGGTGTAATTTGTGAAACTGATGC
AATTAATTGTAGATTAATAGCTTGTAAAGAAGGTGAATTCTGTATTGACAATATTGAAAA
CACTCCACCAAAATGTTATCCAAAATTATTGTGCAACCTATCAAAAATACCACCTGACTA
TTATTGTATATCTGATGAAATTAGAGGAGGATTCTATGTTAAATATGAATCATATATTGA
TCTTTCATGTGAAACTTTATTATGTGAAGGTGTAAATAGTTATTGTGTTGAAAATGGTGG
TCCAATTTGTAAAACTTGGCCAAATGATACAATTCAATATCAACCAAGTTGTGATAAATG
TCCAAAAGATACAATGAGTTGTACTCCAAATGAAAATAGTAATAATAAAGGTGTAGTTTG
TAGAATTGATCGTCCATCTTGTTCAGTTATTCAATGTCCAGATAATCAATATTGTGT