>CHR604 (CHR604Q) /CSM/CH/CHR6-A/CHR604Q.Seq.d/
XXXXXXXXXXCTCCAGAGAGACTATATGAAGAAATTCATAATTCCCAATTTGAATAAAGC
AGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAA
CTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACA
AGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGA
GTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAA
ATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATT
TTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACA
ACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAA
AGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGT
CTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAGAAATAA
TAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAAT
TAAAAATCAATTAAAAAATATTCAACATGAACAACNAA

---QRDYMKKFIIPNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELARNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQX

Frame A:
---sreti*rns*fpi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnk
mplnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnf
qikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmls
t*vmlkklnlnwmlnwleiinkrikmri*fkrnnnlltklkin*kifnmnnx


Frame B:
---perlyeeihnsqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*tr
ch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtif
k*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccl
le*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*tt


Frame C:
---QRDYMKKFIIPNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELARNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQX

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHD214 (SHD214Q) /CSM/SH/SHD2-A/SHD214Q.Seq.d/                        771   0.0
SHD213 (SHD213Q) /CSM/SH/SHD2-A/SHD213Q.Seq.d/                        771   0.0
CHR604 (CHR604Q) /CSM/CH/CHR6-A/CHR604Q.Seq.d/                        771   0.0
CHR581 (CHR581Q) /CSM/CH/CHR5-D/CHR581Q.Seq.d/                        771   0.0
CHI629 (CHI629Q) /CSM/CH/CHI6-B/CHI629Q.Seq.d/                        771   0.0
CHF665 (CHF665Q) /CSM/CH/CHF6-C/CHF665Q.Seq.d/                        771   0.0
CHF209 (CHF209Q) /CSM/CH/CHF2-A/CHF209Q.Seq.d/                        771   0.0
AHL268 (AHL268Q) /CSM/AH/AHL2-C/AHL268Q.Seq.d/                        771   0.0
AHH887 (AHH887Q) /CSM/AH/AHH8-D/AHH887Q.Seq.d/                        771   0.0
AHH676 (AHH676Q) /CSM/AH/AHH6-D/AHH676Q.Seq.d/                        771   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   704   0.0    3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   3e-25  1
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   0.032  13
AL672188|AL672188.6 Mouse DNA sequence from clone RP23-53B2 on chromosome X.    36   0.14   6
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.25   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.25   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.25   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.25   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.25   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.25   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   283   8e-77
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.33
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    36   1.2
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   1.2
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   1.6
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   1.6
CR450845_2(CR450845|pid:none) Zebrafish DNA sequence from clone ...    35   1.6
AE014186_170(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.1
AE017343_653(AE017343|pid:none) Cryptococcus neoformans var. neo...    35   2.1
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    35   2.8

 psg: 0.69  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHR604 is nuc

>CHR604Z.Seq
NNNNNNNNNNCTCCAGAGAGACTATATGAAGAAATTCATAATTCCCAATTTGAATAAAGC
AGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAA
CTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACA
AGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGA
GTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAA
ATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATT
TTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACA
ACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAA
AGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGT
CTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAGAAATAA
TAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAAT
TAAAAATCAATTAAAAAATATTCAACATGAACAACNAA