>CHR601 (CHR601Q) /CSM/CH/CHR6-A/CHR601Q.Seq.d/
ATTCATTTTATTTTTAATNAATTCAAATTAAAAAAAAACAATAACTAACTAAGTTAAAAA
TAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATATTCC
TTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAAGAATGTCATA
AATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGGGCTT
GCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCATCCA
ATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAATTA
CAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTTATTAGGTA
AATCATGTAGTTTCCAAAAGAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTGAAT
CAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTGGTGGTTCATCAGGTGGTA
CATCAGGTGGTAGTTCATCAGGTGGTACATCAGGTGGTAGTTCATCAGGTGGTACATCAG
GTAGTTCATCAAGTGXXXXXXXXXXAGTTTGTTNTTTAAGATGTCCNCCCAAATTCATGA
ATGTAGATTTAATGACCAAGGGTCATCAATGCTGTGTAAAGGTTCACCATGATAGATGTT
CATTAAGATGTCCACATGGCCATGAATGTAAAGTTGATCACAATGGTAAAGAATGTTGCG
TCAGATCCCATAGACCACCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATG
AATGTAAATTTGATGATCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTT
GTGATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTT
GTGTCCGTTCAGAAAGACCACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCAC
CAGGCCATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGAC
CACCACCAAAATGCTCTTTAAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTG
GTGAAGAATGTTGTGTTAAAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCC
ATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCAC
CAAAATGCTCATTAAGATGTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAG
AATGCTGTGTTAAAAGTAGAAATGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAA
AAGGTTTACATTGTGCCATGAAAACTGTACCAATTGATAAAGAAAATTGTTGNAAAAAG

sfyf*xiqikkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEEECHK
SSECIVINYTPCCGEQKWACSKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIKIT
TPTEYSCSDAKIKECALLGKSCSFQKNSCSNPTSCCPGESICEGLSSGSSTSGGGSSGGT
SGGSSSGGTSGGSSSGGTSGSSSS---

---VCXLRCPPKFMNVDLMTKGHQCCVKVHHDRCSLRCPHGHECKVDHNGKECCVRSHRP
PPPEVCSLRCPPKHECKFDDHGKKCCVKIHCDEVCDLDCGRGFECKIRHDGSKCCVRSER
PHPPQHEKCNKRCPPGHECKVDQHGKECCVVAHRPPPKCSLRCPPRHECRVNHFGEECCV
KVHHDKCSLRCPPGHECKVDQHGKECCVVAHRPPPKCSLRCPPKHECRINHFGEECCVKS
RNDCLTCEDLNCERKGLHCAMKTVPIDKENCXKK

Frame A:
ihfifnxfklkknnn*ls*k*knnkgccf*kileyfl*yslyqnpmrrivikllmkknvi
nlrnvll*iihhvvvnknglalkvhlilvhmkivvieihpitkllkyqinasilmdllkl
qlqpsilvlmprlknvpy*vnhvvskrtlvqiqlpvaqvnqfvkv*alvvqhlvvvhqvv
hqvvvhqvvhqvvvhqvvhqvvhqv---

---slxfkmsxqihecrfndqgssmlckgsp**mfikmstwp*m*s*sqw*rmlrqip*t
tttrslfikmptkt*m*i**sw*kmlckdsl**sl*frlw*rf*m*n*t*wfkmlcpfrk
ttpttt*km**emptrp*m*s*stwkrmlrccp*tttkmlfkmstkt*m*sqplw*rmlc
*sspr*mfiemstrp*m*s*stwkrmlrccp*tttkmlikmstkt*m*nqslw*rmlc*k
*k*lfnl*rpkl*kkrftlchenctn**rkllxk

Frame B:
filflxnsn*kktitn*vknkkiikdvvskkywsifydipcikilcdgl**ny**rrms*
ifgmycyklytmlw*tkmgll*ryi*ylyi*k*ll*kfiq*psc*sik*mlqs*wiy*ny
nsnrvflf*cqd*rmclir*im*fpkellfksnfllpr*inl*rfklw*fniwwwfirwy
irw*firwyirw*firwyir*fik---

---VCXLRCPPKFMNVDLMTKGHQCCVKVHHDRCSLRCPHGHECKVDHNGKECCVRSHRP
PPPEVCSLRCPPKHECKFDDHGKKCCVKIHCDEVCDLDCGRGFECKIRHDGSKCCVRSER
PHPPQHEKCNKRCPPGHECKVDQHGKECCVVAHRPPPKCSLRCPPRHECRVNHFGEECCV
KVHHDKCSLRCPPGHECKVDQHGKECCVVAHRPPPKCSLRCPPKHECRINHFGEECCVKS
RNDCLTCEDLNCERKGLHCAMKTVPIDKENCXKK

Frame C:
sfyf*xiqikkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEEECHK
SSECIVINYTPCCGEQKWACSKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIKIT
TPTEYSCSDAKIKECALLGKSCSFQKNSCSNPTSCCPGESICEGLSSGSSTSGGGSSGGT
SGGSSSGGTSGGSSSGGTSGSSSS---

---fvx*dvxpns*m*i**prvinav*rftmidvh*dvhmamnvklitmvknvasdpidh
hhqkfvh*dahqnmnvnlmimvknvv*rfivmkfvi*ivvevlnvkldmmvqnvvsvqkd
hthhnmknvirdahqamnvklinmeknvallpidhhqnal*dvhqdmnvesttlvknvvl
kfttinvh*dvhqamnvklinmeknvallpidhhqnah*dvhqnmnvesitlvknavlkv
emiv*lvkt*tvkekvyivp*klyqlikkivxk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR601 (CHR601Q) /CSM/CH/CHR6-A/CHR601Q.Seq.d/                       1635   0.0
CHR421 (CHR421Q) /CSM/CH/CHR4-A/CHR421Q.Seq.d/                       1568   0.0
AHD145 (AHD145Q) /CSM/AH/AHD1-B/AHD145Q.Seq.d/                       1564   0.0
CHL140 (CHL140Q) /CSM/CH/CHL1-B/CHL140Q.Seq.d/                       1558   0.0
AHL722 (AHL722Q) /CSM/AH/AHL7-A/AHL722Q.Seq.d/                       1558   0.0
CHL174 (CHL174Q) /CSM/CH/CHL1-D/CHL174Q.Seq.d/                       1556   0.0
CHR829 (CHR829Q) /CSM/CH/CHR8-B/CHR829Q.Seq.d/                       1552   0.0
CHR406 (CHR406Q) /CSM/CH/CHR4-A/CHR406Q.Seq.d/                       1552   0.0
CHI212 (CHI212Q) /CSM/CH/CHI2-A/CHI212Q.Seq.d/                       1552   0.0
CHF268 (CHF268Q) /CSM/CH/CHF2-C/CHF268Q.Seq.d/                       1552   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.  1491   0.0    3
U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.  1491   0.0    3
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    66   3e-16  4
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    66   8e-16  4
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    66   1e-07  2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    48   5e-04  2
AC141955|AC141955.2 Rattus norvegicus clone CH230-418P10, WORKING DRAFT SEQUENCE, 29 unordered pieces.    48   0.24   3
AC162511|AC162511.3 Bos taurus clone CH240-113F1, *** SEQUENCING IN PROGRESS ***, 45 unordered pieces.    46   0.50   5
AC127160|AC127160.3 Rattus norvegicus clone CH230-460D14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   0.52   1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    46   0.62   11

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   611   e-173
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   204   6e-51
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...   123   1e-26
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;       116   2e-24
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...   112   4e-23
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName...   106   2e-21
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    91   1e-16
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    71   8e-11
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    70   2e-10
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    70   2e-10

 psg: 1.02  gvh: 0.68  alm: 0.51  top: 0.20  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: vacuolar
	 12.0 %: endoplasmic reticulum
	  8.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for CHR601 is exc

>CHR601F.Seq
ATTCATTTTATTTTTAATNAATTCAAATTAAAAAAAAACAATAACTAACTAAGTTAAAAA
TAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATATTCC
TTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAAGAATGTCATA
AATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGGGCTT
GCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCATCCA
ATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAATTA
CAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTTATTAGGTA
AATCATGTAGTTTCCAAAAGAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTGAAT
CAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTGGTGGTTCATCAGGTGGTA
CATCAGGTGGTAGTTCATCAGGTGGTACATCAGGTGGTAGTTCATCAGGTGGTACATCAG
GTAGTTCATCAAGTGNNNNNNNNNN

>CHR601Z.Seq
NNNNNNNNNNAGTTTGTTNTTTAAGATGTCCNCCCAAATTCATGAATGTAGATTTAATGA
CCAAGGGTCATCAATGCTGTGTAAAGGTTCACCATGATAGATGTTCATTAAGATGTCCAC
ATGGCCATGAATGTAAAGTTGATCACAATGGTAAAGAATGTTGCGTCAGATCCCATAGAC
CACCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAATGTAAATTTGATG
ATCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTG
GTAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAA
GACCACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATGTA
AAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCT
CTTTAAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGTG
TTAAAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGTTG
ATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCATTAA
GATGTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAA
GTAGAAATGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGTG
CCATGAAAACTGTACCAATTGATAAAGAAAATTGTTGNAAAAAG

>CHR601P.Seq
ATTCATTTTATTTTTAATNAATTCAAATTAAAAAAAAACAATAACTAACTAAGTTAAAAA
TAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATATTCC
TTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAAGAATGTCATA
AATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGGGCTT
GCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCATCCA
ATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAATTA
CAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTTATTAGGTA
AATCATGTAGTTTCCAAAAGAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTGAAT
CAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTGGTGGTTCATCAGGTGGTA
CATCAGGTGGTAGTTCATCAGGTGGTACATCAGGTGGTAGTTCATCAGGTGGTACATCAG
GTAGTTCATCAAGTG----------AGTTTGTTNTTTAAGATGTCCNCCCAAATTCATGA
ATGTAGATTTAATGACCAAGGGTCATCAATGCTGTGTAAAGGTTCACCATGATAGATGTT
CATTAAGATGTCCACATGGCCATGAATGTAAAGTTGATCACAATGGTAAAGAATGTTGCG
TCAGATCCCATAGACCACCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATG
AATGTAAATTTGATGATCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTT
GTGATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTT
GTGTCCGTTCAGAAAGACCACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCAC
CAGGCCATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGAC
CACCACCAAAATGCTCTTTAAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTG
GTGAAGAATGTTGTGTTAAAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCC
ATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCAC
CAAAATGCTCATTAAGATGTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAG
AATGCTGTGTTAAAAGTAGAAATGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAA
AAGGTTTACATTGTGCCATGAAAACTGTACCAATTGATAAAGAAAATTGTTGNAAAAAG