CHR590 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHR590
Library	CH (Link to library)
Clone ID	CHR590 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16308-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHR5-D/CHR590Q.Seq.d/
Representative seq. ID	CHR590P (Link to Original site)
Representative DNA sequence	>CHR590 (CHR590Q) /CSM/CH/CHR5-D/CHR590Q.Seq.d/ ACTAAAACAAAAACAAAAACAAATAAAAATTAAATAAATAAATAAGTAAATAAATAAATA AATTAAATAGTAACTAAATTAATTATTATTAAATAAATATATAAAAAAAAAACTTTTAAA AATGGCAACAATCTTTGATATTTTAAATACTCTTAATAATAATAATAATAATAATTTTGA AAATTGTAAAAGACAATGCTCAACCAATAAAAGCAATAAGACAATTATTGATATACTACC ACCAATGGATGTAACAATGACAAATGATAAACTAATCATTGAAACAGAGTTAGCAGGTAT TTCAAAAGATCATATTGAAATTGACATTAAAGATTCAATACTCACTATTCAAGGNGAATT GAAAAAGAAATTTAAAGAAGAAAAGAATTTACAATTTAAATGGAGAGGTAGTCCANAAGG TGTTGGACCAAAATCAGATATATTAGCTCATGTTTTCGATGATTTCTATACAAGTCCACC ACATATGAGTTTTGATGGTTACAATTTCCTTGCCTATGGTTTACCAAGATTAACAATGGA AATGATTGAATTGGCACGTAATCGTTCAGTATTTTATAAATCTCCACATGTTTTAXXXXX XXXXXTGCTAATCAAATTACTGGAAATTAATCAACAACTTTTAACTTATTCAGATATTGG TGGTGCTTATATTTTCCGTACAAATAAACAAGTTTTTCAACCACCAAGACAAGTTTATTC AACTTTTACTTATATTGGTAAATTTTATCAAGAAGCTCAAAGTATATTACAAGATACTCA TCAAATTTCAAATAGAAATGGTTATTATTATTATTATGGTAATAATCAACAACAACAACA ACAACAACAAACTATTTCAACATTTAATTATAACAGTATTAAATTAATTAATACTGGTAA TGAAATGATTGATAAAAAGATTAATTTCAATTTTCATATTAGAGGTATAAATGGTACAAC AACCATTAATAGATTTACAACTGATATTGATAATAATCGTGAATTATATAGTGATAATGG TTTAGAGATGATGCATAGAAAATCAATTTCATCACAATCAGTTGAAGTTGGTAGAGAAAC TCAAAGTTATTATCCAACTATTAATTCAGTTTATATCGAATCACTTTTGATTTAAATGGC TTATTCTCTTTTATCAAATCAATTAAATCAATTAAAGAATATAATTTATCTTTAATCAAT AGATTCGTTGATAATAATATTGATAATATTATTTCTTCTCATCGTTCAATTGTTGGAAAA AATCTTTTCCCTATTAAAGATACTCCAACTCGTTTCAACCCAATTAATACAAAACAAACT AAAATTACCTTATATCCATCAGAAATTAAAGCAATNAAATTACTTATCATTAAAATTATG TATCAAATAAAATAA
sequence update	2002.10.25
Translated Amino Acid sequence	lkqkqkqikikinkinkiklnLLLNKYIKKKLLKMATIFDILNTLNNNNNNNFE NCKRQCSTNKSNKTIIDILPPMDVTMTNDKLIIETELAGISKDHIEIDIKDSILTIQGEL KKKFKEEKNLQFKWRGSPXGVGPKSDILAHVFDDFYTSPPHMSFDGYNFLAYGLPRLTME MIELARNRSVFYKSPHVL--- ---LIKLLEINQQLLTYSDIGGAYIFRTNKQVFQPPRQVYSTFTYIGKFYQEAQSILQDT HQISNRNGYYYYYGNNQQQQQQQQTISTFNYNSIKLINTGNEMIDKKINFNFHIRGINGT TTINRFTTDIDNNRELYSDNGLEMMHRKSISSQSVEVGRETQSYYPTINSVYIESLLIm aysllsnqlnqlkniiylsidsliiiliilfllivqllekifsllkilqlvstqliqnk lklpyihqklkqxnylslklcik*n
Translated Amino Acid sequence (All Frames)	Frame A: tktktktnkninkvnkinivtkliiikiykkktfkngnnlyfkys******f klktmlnqkqdnyytttngcnndk*tnhnrvsryfkrsynhrfnthysrxi ekeirrkeftimersxrcwtkiryisscfrflyksttyefwlqfpclwftkinng ndigtsfsilistcf--- ---csnywklinnfliqilvvlifsvqinkffnhqdkfiqlllilvnfikklkvyyki likfqiemviiiimviinnnnnnnklfqhliitvlnlilvmklikrlisifilevmv qqplidlqliliiivnyivimvrcienqfhhnqlklveklkviiqlliqfisnhffk wlilfyqininrififnqiryyyffssfncwkksfpyrysnsfqpnykt nnylisirnsnxityhnyvsnki Frame B: lkqkqkqikikinkinkik*lnLLLNKYIKKKLLKMATIFDILNTLNNNNNNNFE NCKRQCSTNKSNKTIIDILPPMDVTMTNDKLIIETELAGISKDHIEIDIKDSILTIQGEL KKKFKEEKNLQFKWRGSPXGVGPKSDILAHVFDDFYTSPPHMSFDGYNFLAYGLPRLTME MIELARNRSVFYKSPHVL--- ---anqitgnsttfnlfrywwclyfpyktsfsttktslfnfylywilsrsskyitry ssnfkkwlllllw*stttttttnyfnilqyinywndkdfqfsyrykwy nnhiyny**sii**wfrddakinfitisswrnskllsnyfslyritfdln glfsfiksiksikeynlslinrfvdnnidniisshrsivgknlfpikdtptrfnpintkq tkitlypseikaxklliikimyqik Frame C: nknknkklnkiskinklnsninyyinikknfkwqqslifilliiiiiiilk ivkdnaqpikairqlliyyhqwmqqminslkqsqvfqkiilkltlkiqyslfkxn krnlkkkriynlngevvxkvldqnqiylmfsmisiqvhhivlmvtislpmvyqdqwk lnwhvivqyfinlhmf--- ---LIKLLEINQQLLTYSDIGGAYIFRTNKQVFQPPRQVYSTFTYIGKFYQEAQSILQDT HQISNRNGYYYYYGNNQQQQQQQQTISTFNYNSIKLINTGNEMIDKKINFNFHIRGINGT TTINRFTTDIDNNRELYSDNGLEMMHRKSISSQSVEVGRETQSYYPTINSVYIESLLIm aysllsnqlnqlkniiylsidsliiiliilfllivqllekifsllkilqlvstqliqnk lklpyihqklkqxnylslklcik*n
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHR590 (CHR590Q) /CSM/CH/CHR5-D/CHR590Q.Seq.d/ 1219 0.0 SHF725 (SHF725Q) /CSM/SH/SHF7-B/SHF725Q.Seq.d/ 543 e-153 SHD781 (SHD781Q) /CSM/SH/SHD7-D/SHD781Q.Seq.d/ 543 e-153 SHC738 (SHC738Q) /CSM/SH/SHC7-B/SHC738Q.Seq.d/ 543 e-153 SHC488 (SHC488Q) /CSM/SH/SHC4-D/SHC488Q.Seq.d/ 543 e-153 CHH209 (CHH209Q) /CSM/CH/CHH2-A/CHH209Q.Seq.d/ 543 e-153 CHF377 (CHF377Q) /CSM/CH/CHF3-D/CHF377Q.Seq.d/ 543 e-153 AHK370 (AHK370Q) /CSM/AH/AHK3-C/AHK370Q.Seq.d/ 543 e-153 SLG577 (SLG577Q) /CSM/SL/SLG5-D/SLG577Q.Seq.d/ 539 e-152 SHA340 (SHA340Q) /CSM/SH/SHA3-B/SHA340Q.Seq.d/ 539 e-152
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116955\|AC116955.2 Dictyostelium discoideum chromosome 2 map 5455881-5481449 strain AX4, complete sequence. 363 e-114 2 AC116967\|AC116967.2 Dictyostelium discoideum chromosome 2 map 5481549-5500786 strain AX4, complete sequence. 333 e-101 2 AC117081\|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 204 1e-54 2 AC116550\|AC116550.2 Dictyostelium discoideum chromosome 2 map 375056-387392 strain AX4, complete sequence. 107 2e-22 4 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 90 1e-17 3 AR707080\|AR707080.1 Sequence 23 from patent US 6933145. 44 5e-05 6 AX392733\|AX392733.1 Sequence 23 from Patent WO0212526. 44 5e-05 6 AC004688\|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, * SEQUENCING IN PROGRESS *, 4 unordered pieces. 34 2e-04 13 AL929353\|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4. 40 0.002 9 BA000021\|BA000021.3 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome. 36 0.005 20
dna update	2005.11.19
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q550E9) RecName: Full=Small heat shock protein hspG8; 140 1e-31 (Q8MPA7) RecName: Full=Small heat shock protein hspG5; &AC11695... 132 3e-29 AC116967_6(AC116967\|pid:none) Dictyostelium discoideum chromosom... 131 5e-29 (Q550E3) RecName: Full=Small heat shock protein hspG11; 131 5e-29 (Q86KF5) RecName: Full=Small heat shock protein hspG9; &AC11696... 123 2e-26 AC116967_4(AC116967\|pid:none) Dictyostelium discoideum chromosom... 97 1e-18 (Q552K9) RecName: Full=Small heat shock protein hspG2; 89 5e-16 (Q551G1) RecName: Full=Small heat shock protein hspG4; 88 8e-16 AC116550_9(AC116550\|pid:none) Dictyostelium discoideum chromosom... 87 1e-15 (Q86I25) RecName: Full=Small heat shock protein hspG1; &AC11630... 87 2e-15
protein update	2009. 4.12
PSORT	psg: 0.86 gvh: 0.40 alm: 0.45 top: 0.60 tms: 0.00 mit: 0.33 mip: 0.07 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: nuclear 32.0 %: cytoplasmic 16.0 %: mitochondrial 4.0 %: vesicles of secretory system 4.0 %: endoplasmic reticulum >> prediction for CHR590 is nuc
5' end seq. ID	CHR590F
5' end seq.	>CHR590F.Seq ACTAAAACAAAAACAAAAACAAATAAAAATTAAATAAATAAATAAGTAAATAAATAAATA AATTAAATAGTAACTAAATTAATTATTATTAAATAAATATATAAAAAAAAAACTTTTAAA AATGGCAACAATCTTTGATATTTTAAATACTCTTAATAATAATAATAATAATAATTTTGA AAATTGTAAAAGACAATGCTCAACCAATAAAAGCAATAAGACAATTATTGATATACTACC ACCAATGGATGTAACAATGACAAATGATAAACTAATCATTGAAACAGAGTTAGCAGGTAT TTCAAAAGATCATATTGAAATTGACATTAAAGATTCAATACTCACTATTCAAGGNGAATT GAAAAAGAAATTTAAAGAAGAAAAGAATTTACAATTTAAATGGAGAGGTAGTCCANAAGG TGTTGGACCAAAATCAGATATATTAGCTCATGTTTTCGATGATTTCTATACAAGTCCACC ACATATGAGTTTTGATGGTTACAATTTCCTTGCCTATGGTTTACCAAGATTAACAATGGA AATGATTGAATTGGCACGTAATCGTTCAGTATTTTATAAATCTCCACATGTTTTANNNNN NNNNN
Length of 5' end seq.	605
3' end seq. ID	CHR590Z
3' end seq.	>CHR590Z.Seq NNNNNNNNNNTGCTAATCAAATTACTGGAAATTAATCAACAACTTTTAACTTATTCAGAT ATTGGTGGTGCTTATATTTTCCGTACAAATAAACAAGTTTTTCAACCACCAAGACAAGTT TATTCAACTTTTACTTATATTGGTAAATTTTATCAAGAAGCTCAAAGTATATTACAAGAT ACTCATCAAATTTCAAATAGAAATGGTTATTATTATTATTATGGTAATAATCAACAACAA CAACAACAACAACAAACTATTTCAACATTTAATTATAACAGTATTAAATTAATTAATACT GGTAATGAAATGATTGATAAAAAGATTAATTTCAATTTTCATATTAGAGGTATAAATGGT ACAACAACCATTAATAGATTTACAACTGATATTGATAATAATCGTGAATTATATAGTGAT AATGGTTTAGAGATGATGCATAGAAAATCAATTTCATCACAATCAGTTGAAGTTGGTAGA GAAACTCAAAGTTATTATCCAACTATTAATTCAGTTTATATCGAATCACTTTTGATTTAA ATGGCTTATTCTCTTTTATCAAATCAATTAAATCAATTAAAGAATATAATTTATCTTTAA TCAATAGATTCGTTGATAATAATATTGATAATATTATTTCTTCTCATCGTTCAATTGTTG GAAAAAATCTTTTCCCTATTAAAGATACTCCAACTCGTTTCAACCCAATTAATACAAAAC AAACTAAAATTACCTTATATCCATCAGAAATTAAAGCAATNAAATTACTTATCATTAAAA TTATGTATCAAATAAAATAA
Length of 3' end seq.	800
Connected seq. ID	CHR590P
Connected seq.	>CHR590P.Seq ACTAAAACAAAAACAAAAACAAATAAAAATTAAATAAATAAATAAGTAAATAAATAAATA AATTAAATAGTAACTAAATTAATTATTATTAAATAAATATATAAAAAAAAAACTTTTAAA AATGGCAACAATCTTTGATATTTTAAATACTCTTAATAATAATAATAATAATAATTTTGA AAATTGTAAAAGACAATGCTCAACCAATAAAAGCAATAAGACAATTATTGATATACTACC ACCAATGGATGTAACAATGACAAATGATAAACTAATCATTGAAACAGAGTTAGCAGGTAT TTCAAAAGATCATATTGAAATTGACATTAAAGATTCAATACTCACTATTCAAGGNGAATT GAAAAAGAAATTTAAAGAAGAAAAGAATTTACAATTTAAATGGAGAGGTAGTCCANAAGG TGTTGGACCAAAATCAGATATATTAGCTCATGTTTTCGATGATTTCTATACAAGTCCACC ACATATGAGTTTTGATGGTTACAATTTCCTTGCCTATGGTTTACCAAGATTAACAATGGA AATGATTGAATTGGCACGTAATCGTTCAGTATTTTATAAATCTCCACATGTTTTA----- -----TGCTAATCAAATTACTGGAAATTAATCAACAACTTTTAACTTATTCAGATATTGG TGGTGCTTATATTTTCCGTACAAATAAACAAGTTTTTCAACCACCAAGACAAGTTTATTC AACTTTTACTTATATTGGTAAATTTTATCAAGAAGCTCAAAGTATATTACAAGATACTCA TCAAATTTCAAATAGAAATGGTTATTATTATTATTATGGTAATAATCAACAACAACAACA ACAACAACAAACTATTTCAACATTTAATTATAACAGTATTAAATTAATTAATACTGGTAA TGAAATGATTGATAAAAAGATTAATTTCAATTTTCATATTAGAGGTATAAATGGTACAAC AACCATTAATAGATTTACAACTGATATTGATAATAATCGTGAATTATATAGTGATAATGG TTTAGAGATGATGCATAGAAAATCAATTTCATCACAATCAGTTGAAGTTGGTAGAGAAAC TCAAAGTTATTATCCAACTATTAATTCAGTTTATATCGAATCACTTTTGATTTAAATGGC TTATTCTCTTTTATCAAATCAATTAAATCAATTAAAGAATATAATTTATCTTTAATCAAT AGATTCGTTGATAATAATATTGATAATATTATTTCTTCTCATCGTTCAATTGTTGGAAAA AATCTTTTCCCTATTAAAGATACTCCAACTCGTTTCAACCCAATTAATACAAAACAAACT AAAATTACCTTATATCCATCAGAAATTAAAGCAATNAAATTACTTATCATTAAAATTATG TATCAAATAAAATAA
Length of connected seq.	1385
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas