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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR584
Library CH
(Link to library)
Clone ID CHR584
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15603-1
Original site URL
Representative seq. ID CHR584P
(Link to Original site)
Representative DNA sequence 
>CHR584 (CHR584Q) /CSM/CH/CHR5-D/CHR584Q.Seq.d/
ATTAATTTAACCAAATCTAGACAACAAGAACATCAAAATCGTATTGGTGAAATGATTGAT
GCTCATCAAGAGAATATTTTAAAACTTGGTTATGCAATGAAAATGGAAAAGTTAAGACAA
GAATTGGATCTACGTGAGAAATTAACAAATTTAAAAGAGAAAACTATCGATTCAACCAAC
ACTGATGATGTTAATGCTGCAAATGGTGTTGCTGAATCTTCAAATTCTTCAACTATCGAC
GTTGAAGAGATTGTAAAGAAAATGCTATTAATGAATTCAACACATCAACAACAACAACAA
AACTTTTCCTCACCATCTTCAACTTCACCAACTTTAGTAAATGGTGAATCATCACCAAAA
AGTGGTAGATCATCAAATACCACTAGTAGTAGTAGTGGTGGTGGTGGTGGTGGGTGGTCG
TAAAAGATCATCAACAATTGTTGAAGTTAAAGTTAAAGAAGTACCATCAAGTGCATTATT
AAAGGAGGATGAAACAAGTGGTTATTTGAAAAAGAAATCAGCATTTAAAGAGGAATGGAA
ACCAAGATGGTTTGTTTTTAAGAAACCATACCTTTATTATTCACATAATCAAAAAGATAC
TCATAAATTAAAGAAAATCGATTTAACCAATAGTTCAGTTXXXXXXXXXXAACCGTTGAA
AAACAATTATCCCTAATGAAAGATCGTCTCATTCAATCAGAGAATCAATTGATAGATCGT
GAATGTGAAAATACTATCCTCTCTGATAAATTAAAACTTTGGGAAGAAGAGATCAAGATT
AAAGATTCCAAATTAAGTCTCTTGGAAAATAATGTCAAAGAGGTTAGAGCAGAGTATGCC
AATGGTATGGCCTTCTCTAGAGAGTTCTCTCAGCATCATACAGATAGTGGTAGCATCAGT
GGTAAGTTCAATAGAAGATCCAAACAAATCTCTGCTGAAGAACAAATGGAAACCCTTAGA
GAAAGTTCAATCGCTCATCAATCTCATAACGCCTTTTTGAATTCACAAATTCAACGTTTG
GAGACTGAAATGAGAACTCAAGAAAAGGTTTACAGTGATACCATTCAAAGAATTAAAAAA
GATCTTCAACAAAGAAATCAACAAAATATAGCTTTTATGAAACATCAAGTCGGTGATGAA
ATCGTTAAAAAGATGGAAGATGTTACAGCCTCTATGGAGATTTTGAAAAAGAAATATTTC
GTTAGTTTAGTTGTTGCTGCAAAACTTCAAAATGCAATGATGGGTAATATTTGTAATGTT
GATGCTTATGAATTATATGAACAATCTGTAGTTGAACATATTTTAGATCAAGATCAAGGC
CAAATTGGATAGCTCAAACAATTTCAACTCAAAATAAACATTTATAAATATA
sequence update 2002.10.25
Translated Amino Acid sequence 
li*pnldnknikivlvk*lmlikrif*nlvmq*kwks*dknwiyvrn*qi*krklsiqpt
lmmlmlqmvllnlqilqlstlkrl*rkcy**iqhinnnnktfphhlqlhql**MVNHHQK
VVDHQIPLVVVVVVVVVGGRKRSSTIVEVKVKEVPSSALLKEDETSGYLKKKSAFKEEWK
PRWFVFKKPYLYYSHNQKDTHKLKKIDLTNSSV---

---TVEKQLSLMKDRLIQSENQLIDRECENTILSDKLKLWEEEIKIKDSKLSLLENNVKE
VRAEYANGMAFSREFSQHHTDSGSISGKFNRRSKQISAEEQMETLRESSIAHQSHNAFLN
SQIQRLETEMRTQEKVYSDTIQRIKKDLQQRNQQNIAFMKHQVGDEIVKKMEDVTASMEI
LKKKYFVSLVVAAKLQNAMMGNICNVDAYELYEQSVVEHILDQDQGQIG*lkqfqlkini
yky
Translated Amino Acid sequence (All Frames) 
Frame A:
inltksrqqehqnrigemidahqenilklgyamkmeklrqeldlrekltnlkektidstn
tddvnaangvaessnsstidveeivkkmllmnsthqqqqqnfsspsstsptlvngesspk
sgrssnttssssggggggws*kiinnc*s*s*rstikciikgg*nkwlfekeisi*rgme
tkmvcf*etipllft*skrys*ikenrfnq*fs---

---nr*ktiipnersshsiresidrs*m*kyypl**iktlgrrdqd*rfqikslgk*cqr
g*srvcqwygll*rvlsasyr*w*hqw*vq*kiqtnlc*rtngnp*rkfnrssis*rlfe
ftnstfgd*nensrkglq*yhskn*krsstkkstkysfyetssr**nr*kdgrcyslygd
fekeifr*fscccktskcndg*yl*c*cl*ii*tics*tyfrsrsrpnwiaqtistqnkh
l*i

Frame B:
li*pnldnknikivlvk*lmlikrif*nlvmq*kwks*dknwiyvrn*qi*krklsiqpt
lmmlmlqmvllnlqilqlstlkrl*rkcy**iqhinnnnktfphhlqlhql**MVNHHQK
VVDHQIPLVVVVVVVVVGGRKRSSTIVEVKVKEVPSSALLKEDETSGYLKKKSAFKEEWK
PRWFVFKKPYLYYSHNQKDTHKLKKIDLTNSSV---

---TVEKQLSLMKDRLIQSENQLIDRECENTILSDKLKLWEEEIKIKDSKLSLLENNVKE
VRAEYANGMAFSREFSQHHTDSGSISGKFNRRSKQISAEEQMETLRESSIAHQSHNAFLN
SQIQRLETEMRTQEKVYSDTIQRIKKDLQQRNQQNIAFMKHQVGDEIVKKMEDVTASMEI
LKKKYFVSLVVAAKLQNAMMGNICNVDAYELYEQSVVEHILDQDQGQIG*lkqfqlkini
yky

Frame C:
*fnqi*ttrtsksyw*nd*cssreyfktwlcnengkvktrigst*einkfkrenyrfnqh
**c*cckwcc*ifkffnyrr*rdckenainefntsttttklfltifnftnfskw*iitkk
w*iikyh****wwwwwwvvvkdhqqllklklkkyhqvhy*rrmkqvvi*krnqhlkrngn
qdglflrnhtfiihiikkilin*rksi*pivq---

---plknnyp**kivsfnqrin**ivnvkilsslin*nfgkkrsrlkipn*vswkimskr
leqsmpmvwpslesslsiiqivvasvvssiedpnksllknkwkplekvqslinlitpf*i
hkfnvwrlk*elkkrftvipfkelkkifnkeinki*ll*niksvmkslkrwkmlqplwrf
*krnislv*lllqnfkmq*wvifvmlmlmnymnnl*lnif*ikikakldssnnfnsk*tf
ini
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR584 (CHR584Q) /CSM/CH/CHR5-D/CHR584Q.Seq.d/                       1832   0.0
CFI685 (CFI685Q) /CSM/CF/CFI6-D/CFI685Q.Seq.d/                       1419   0.0
VHC646 (VHC646Q) /CSM/VH/VHC6-B/VHC646Q.Seq.d/                       1417   0.0
CHI432 (CHI432Q) /CSM/CH/CHI4-B/CHI432Q.Seq.d/                       1417   0.0
AFH757 (AFH757Q) /CSM/AF/AFH7-C/AFH757Q.Seq.d/                       1405   0.0
CHQ896 (CHQ896Q) /CSM/CH/CHQ8-D/CHQ896Q.Seq.d/                       1396   0.0
CHM775 (CHM775Q) /CSM/CH/CHM7-D/CHM775Q.Seq.d/                       1370   0.0
SHE714 (SHE714Q) /CSM/SH/SHE7-A/SHE714Q.Seq.d/                       1356   0.0
AHB785 (AHB785Q) /CSM/AH/AHB7-D/AHB785Q.Seq.d/                       1346   0.0
CHP416 (CHP416Q) /CSM/CH/CHP4-A/CHP416Q.Seq.d/                       1318   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF245277|AF245277.1 Dictyostelium discoideum kinesin Unc104/KIF1a homolog (Unc104) mRNA, complete cds.  1322   0.0    2
AC161729|AC161729.1 Loxodonta africana clone VMRC15-446F17, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44   0.001  5
AC162736|AC162736.1 Loxodonta africana clone VMRC15-237P11, WORKING DRAFT SEQUENCE, 8 unordered pieces.    44   0.006  5
AP003117|AP003117.2 Homo sapiens genomic DNA, chromosome 8q23, clone: KB1958F4.    46   0.035  4
AC140382|AC140382.3 Mus musculus BAC clone RP24-86A10 from chromosome Y, complete sequence.    38   0.041  10
AC109469|AC109469.2 Homo sapiens chromosome 5 clone RP11-349F8, complete sequence.    36   0.051  8
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    38   0.054  10
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   0.083  13
AC164164|AC164164.3 Mus musculus BAC clone RP23-180E6 from chromosome 12, complete sequence.    40   0.10   7
AC150902|AC150902.1 Mus musculus chromosome 16 clone RP23-2A19, WORKING DRAFT SEQUENCE, 15 unordered pieces.    50   0.12   1
dna update 2005.11.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9NGQ2) RecName: Full=Kinesin-related protein 1; AltName: Full=...   402   e-115
AC116960_51(AC116960|pid:none) Dictyostelium discoideum chromoso...    69   4e-10
AM910992_27(AM910992|pid:none) Plasmodium knowlesi strain H chro...    45   0.008
CP000884_4176(CP000884|pid:none) Delftia acidovorans SPH-1, comp...    44   0.013
BC068913_1(BC068913|pid:none) Xenopus laevis hypothetical protei...    42   0.049
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p...    42   0.064
BC093150_1(BC093150|pid:none) Danio rerio zgc:111998, mRNA (cDNA...    40   0.14
BC047918_1(BC047918|pid:none) Homo sapiens Rho GTPase activating...    40   0.19
(Q8N264) RecName: Full=Rho GTPase-activating protein 24; AltName...    40   0.19
BC089655_1(BC089655|pid:none) Xenopus tropicalis dual adaptor of...    40   0.19
protein update 2009. 4.12
PSORT 

 psg: 0.97  gvh: 0.52  alm: 0.21  top: 0.57  tms: 0.07  mit: 0.26  mip: 0.06
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHR584 is nuc
5' end seq. ID CHR584F
5' end seq. 
>CHR584F.Seq
ATTAATTTAACCAAATCTAGACAACAAGAACATCAAAATCGTATTGGTGAAATGATTGAT
GCTCATCAAGAGAATATTTTAAAACTTGGTTATGCAATGAAAATGGAAAAGTTAAGACAA
GAATTGGATCTACGTGAGAAATTAACAAATTTAAAAGAGAAAACTATCGATTCAACCAAC
ACTGATGATGTTAATGCTGCAAATGGTGTTGCTGAATCTTCAAATTCTTCAACTATCGAC
GTTGAAGAGATTGTAAAGAAAATGCTATTAATGAATTCAACACATCAACAACAACAACAA
AACTTTTCCTCACCATCTTCAACTTCACCAACTTTAGTAAATGGTGAATCATCACCAAAA
AGTGGTAGATCATCAAATACCACTAGTAGTAGTAGTGGTGGTGGTGGTGGTGGGTGGTCG
TAAAAGATCATCAACAATTGTTGAAGTTAAAGTTAAAGAAGTACCATCAAGTGCATTATT
AAAGGAGGATGAAACAAGTGGTTATTTGAAAAAGAAATCAGCATTTAAAGAGGAATGGAA
ACCAAGATGGTTTGTTTTTAAGAAACCATACCTTTATTATTCACATAATCAAAAAGATAC
TCATAAATTAAAGAAAATCGATTTAACCAATAGTTCAGTTNNNNNNNNNN
Length of 5' end seq. 650
3' end seq. ID CHR584Z
3' end seq. 
>CHR584Z.Seq
NNNNNNNNNNAACCGTTGAAAAACAATTATCCCTAATGAAAGATCGTCTCATTCAATCAG
AGAATCAATTGATAGATCGTGAATGTGAAAATACTATCCTCTCTGATAAATTAAAACTTT
GGGAAGAAGAGATCAAGATTAAAGATTCCAAATTAAGTCTCTTGGAAAATAATGTCAAAG
AGGTTAGAGCAGAGTATGCCAATGGTATGGCCTTCTCTAGAGAGTTCTCTCAGCATCATA
CAGATAGTGGTAGCATCAGTGGTAAGTTCAATAGAAGATCCAAACAAATCTCTGCTGAAG
AACAAATGGAAACCCTTAGAGAAAGTTCAATCGCTCATCAATCTCATAACGCCTTTTTGA
ATTCACAAATTCAACGTTTGGAGACTGAAATGAGAACTCAAGAAAAGGTTTACAGTGATA
CCATTCAAAGAATTAAAAAAGATCTTCAACAAAGAAATCAACAAAATATAGCTTTTATGA
AACATCAAGTCGGTGATGAAATCGTTAAAAAGATGGAAGATGTTACAGCCTCTATGGAGA
TTTTGAAAAAGAAATATTTCGTTAGTTTAGTTGTTGCTGCAAAACTTCAAAATGCAATGA
TGGGTAATATTTGTAATGTTGATGCTTATGAATTATATGAACAATCTGTAGTTGAACATA
TTTTAGATCAAGATCAAGGCCAAATTGGATAGCTCAAACAATTTCAACTCAAAATAAACA
TTTATAAATATA
Length of 3' end seq. 732
Connected seq. ID CHR584P
Connected seq. 
>CHR584P.Seq
ATTAATTTAACCAAATCTAGACAACAAGAACATCAAAATCGTATTGGTGAAATGATTGAT
GCTCATCAAGAGAATATTTTAAAACTTGGTTATGCAATGAAAATGGAAAAGTTAAGACAA
GAATTGGATCTACGTGAGAAATTAACAAATTTAAAAGAGAAAACTATCGATTCAACCAAC
ACTGATGATGTTAATGCTGCAAATGGTGTTGCTGAATCTTCAAATTCTTCAACTATCGAC
GTTGAAGAGATTGTAAAGAAAATGCTATTAATGAATTCAACACATCAACAACAACAACAA
AACTTTTCCTCACCATCTTCAACTTCACCAACTTTAGTAAATGGTGAATCATCACCAAAA
AGTGGTAGATCATCAAATACCACTAGTAGTAGTAGTGGTGGTGGTGGTGGTGGGTGGTCG
TAAAAGATCATCAACAATTGTTGAAGTTAAAGTTAAAGAAGTACCATCAAGTGCATTATT
AAAGGAGGATGAAACAAGTGGTTATTTGAAAAAGAAATCAGCATTTAAAGAGGAATGGAA
ACCAAGATGGTTTGTTTTTAAGAAACCATACCTTTATTATTCACATAATCAAAAAGATAC
TCATAAATTAAAGAAAATCGATTTAACCAATAGTTCAGTT----------AACCGTTGAA
AAACAATTATCCCTAATGAAAGATCGTCTCATTCAATCAGAGAATCAATTGATAGATCGT
GAATGTGAAAATACTATCCTCTCTGATAAATTAAAACTTTGGGAAGAAGAGATCAAGATT
AAAGATTCCAAATTAAGTCTCTTGGAAAATAATGTCAAAGAGGTTAGAGCAGAGTATGCC
AATGGTATGGCCTTCTCTAGAGAGTTCTCTCAGCATCATACAGATAGTGGTAGCATCAGT
GGTAAGTTCAATAGAAGATCCAAACAAATCTCTGCTGAAGAACAAATGGAAACCCTTAGA
GAAAGTTCAATCGCTCATCAATCTCATAACGCCTTTTTGAATTCACAAATTCAACGTTTG
GAGACTGAAATGAGAACTCAAGAAAAGGTTTACAGTGATACCATTCAAAGAATTAAAAAA
GATCTTCAACAAAGAAATCAACAAAATATAGCTTTTATGAAACATCAAGTCGGTGATGAA
ATCGTTAAAAAGATGGAAGATGTTACAGCCTCTATGGAGATTTTGAAAAAGAAATATTTC
GTTAGTTTAGTTGTTGCTGCAAAACTTCAAAATGCAATGATGGGTAATATTTGTAATGTT
GATGCTTATGAATTATATGAACAATCTGTAGTTGAACATATTTTAGATCAAGATCAAGGC
CAAATTGGATAGCTCAAACAATTTCAACTCAAAATAAACATTTATAAATATA
Length of connected seq. 1362
Full length Seq ID -
Full length Seq. -
Length of full length seq. -