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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR574
Library CH
(Link to library)
Clone ID CHR574
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14478-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHR574 (CHR574Q) /CSM/CH/CHR5-D/CHR574Q.Seq.d/
XXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAGATATTAAATTTAATTA
ATTAAATTAAAATATTAATTTCAATAGAATTTTTTATTCAAAATTTTTTTTCCATTCATT
ATTAAATTAATATTCATTTATTTAATTTAATAT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---kkkkkkkkknry*i*liklky*fq*NFLFKIFFPFIIKLIFIYLI*y
Translated Amino Acid sequence (All Frames) 
Frame A:
---kkkkkkkkkk*ilnlin*ikilisieffiqnffsihy*inihlfnli


Frame B:
---kkkkkkkkknry*i*liklky*fq*NFLFKIFFPFIIKLIFIYLI*y


Frame C:
---kkkkkkkkkidikfn*ln*ninfnrifyskfffhslln*ysfi*fn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR574 (CHR574Q) /CSM/CH/CHR5-D/CHR574Q.Seq.d/                         84   7e-16
SLC101 (SLC101Q) /CSM/SL/SLC1-A/SLC101Q.Seq.d/                         38   0.035
VSK174 (VSK174Q) /CSM/VS/VSK1-D/VSK174Q.Seq.d/                         36   0.14
VSI202 (VSI202Q) /CSM/VS/VSI2-A/VSI202Q.Seq.d/                         36   0.14
VSG267 (VSG267Q) /CSM/VS/VSG2-C/VSG267Q.Seq.d/                         36   0.14
SSM847 (SSM847Q) /CSM/SS/SSM8-B/SSM847Q.Seq.d/                         36   0.14
SSH857 (SSH857Q) /CSM/SS/SSH8-C/SSH857Q.Seq.d/                         36   0.14
SSG575 (SSG575Q) /CSM/SS/SSG5-D/SSG575Q.Seq.d/                         36   0.14
SHF181 (SHF181Q) /CSM/SH/SHF1-D/SHF181Q.Seq.d/                         36   0.14
CHN252 (CHN252Q) /CSM/CH/CHN2-C/CHN252Q.Seq.d/                         36   0.14
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC118692|AC118692.5 Mus musculus clone RP24-212H19, WORKING DRAFT SEQUENCE, 5 unordered pieces.    52   0.003  1
BH104710|BH104710.1 RPCI-24-322H20.TJ RPCI-24 Mus musculus genomic clone RPCI-24-322H20 , DNA sequence.    52   0.003  1
AC116463|AC116463.9 Mus musculus chromosome 17 clone RP23-30P1 map 17, *** SEQUENCING IN PROGRESS ***.    52   0.003  1
AC006827|AC006827.1 Caenorhabditis elegans cosmid Y81B9A, complete sequence.    50   0.012  1
BH158459|BH158459.1 ENTTJ85TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   0.048  1
BH154719|BH154719.1 ENTRJ17TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   0.048  1
BH151826|BH151826.1 ENTPT49TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   0.048  1
AZ681365|AZ681365.1 ENTLQ96TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   0.048  1
AZ545209|AZ545209.1 ENTGE49TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   0.048  1
AC144513|AC144513.22 Medicago truncatula clone mth2-15d23, complete sequence.    40   0.17   2
dna update 2005.11.19
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 57,701,205
protein update 2009. 5.20
PSORT -
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHR574Z
3' end seq. 
>CHR574Z.Seq
NNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAGATATTAAATTTAATTA
ATTAAATTAAAATATTAATTTCAATAGAATTTTTTATTCAAAATTTTTTTTCCATTCATT
ATTAAATTAATATTCATTTATTTAATTTAATAT
Length of 3' end seq. 153
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -