CHR572
Library CH
(Link to library)
Clone ID CHR572
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHR572P
(Link to Original site)
Representative DNA sequence
>CHR572 (CHR572Q) /CSM/CH/CHR5-C/CHR572Q.Seq.d/
AATTATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATTAATATTA
ATAAAATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTAT
TAAATATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATT
TAGATTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAA
TTTCTTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTG
CTGATGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTA
CCAATCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTG
TACCATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAA
ATACCTTTGCCTATAACATTCCATTGATTAAACAAGTTTGGTGTTTCATCAGGCTCATCT
ATACTTACAGTTAGAATTAGTGTTGATTTGXXXXXXXXXXTGGAGAGTGNAGGTAAATGT
GGTAGTCTTGTTGGTGCCGGAGTTGATCAAAAATCACTCACTGGTCTTAGATATGGTCCA
GGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTCATGACTATACCAATGCTTTT
GGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCA
TTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCT
TTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGT
CTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTT
TGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATC
ACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCA
AATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTT
GCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAAT
ACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCT
TCTGATGCTGGTGGTTATTATTTTAAGGTTGTTCATTGGTATATTCCAAAAAAATAAAAA
ATAAAAAAATATAAAT
sequence update 2002.10.25
Translated Amino Acid sequence
nyci*yf*iyiliyinililik*kyyihyy*yqv*f*ily*ifhhkyminvfwh*kenvi
*iqikmhcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd*lnvqlmnlhl
piqkiitlkpmkrhwlvhqvyhvfvqrfqliiwqqif*lqiplpitfh*LNKFGVSSGSS
ILTVRISVDL---

---ESXGKCGSLVGAGVDQKSLTGLRYGPGNGNFFDNHKTGLHDYTNAFGATKGGRDIIV
TTGFDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSS
LPQYRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFS
SNYYCVIPVAFFQAGSSITMRNADPTHPNTNSDAFLSTVDNVYVTSFTSSDAGGYYFKVV
HWYIPKK*kikkyk


Translated Amino Acid sequence (All Frames)
Frame A:
nyci*yf*iyiliyinililik*kyyihyy*yqv*f*ily*ifhhkyminvfwh*kenvi
*iqikmhcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd*lnvqlmnlhl
piqkiitlkpmkrhwlvhqvyhvfvqrfqliiwqqif*lqiplpitfh*LNKFGVSSGSS
ILTVRISVDL---

---wrvxvnvvvllvpeliknhslvldmvqvmvisliiikqvfmtipmllvqlkvvvill
lqlvsitmkhlkvqfvgimqplvnn*kvtlyi*plqmvvphlqplvnkmvlvillqcmil
lfhnivlvefgli*mvmvfkmlvnlvfqesqys*smvnnqlqqvklypiqmvisnlklis
vqiiiv*fllhssklvlplq*emliqliqiqivmlsyqllimfmsllllllmlvviilrl
figifqknkk*knin

Frame B:
iivynifkyiy*yiliy*y**neniifiiinikynfkycikyfitsi*styfgikrkmlf
rfk*kciv**r*triwkc*nffrkcn*l*gk*isntlfic*wyiyi*winstynl*iyiy
qskrlll*nl*kdiglstrctmyssngfs**fgsrsfsckylcl*hsid*tslvfhqahl
ylqlelvli---

---gexr*mw*scwcrs*skithws*iwsr*w*fl**s*nrss*lyqcfwcn*rws*yyc
ynwfrll*si*rfnslv*cnlw*ttkrllfiynlfkwsypisnlw*tkwsw*yyfsv*ff
sstiscw*sla*ykw*wysrcw*twyfrnhsilnlwstinsnksncirfkwlfqi*s*fq
fklllcnsccilpswffhynekc*snsskyk**cflinc**clchffyff*cwwllf*gc
slvyskkiknkki*

Frame C:
llyiiflniyiniy*yininkmkilyslllissiilntvlnissqvydqrilalkgkcyl
dsnknalydegepgfgnveislgnatdykgnkypiryssadgtfiydgltqrttyeftft
npkdyyfetyektlacppgvpcirptvsadnlaadllvantfayniplikqvwcfirliy
tys*n*c*f---

---ESXGKCGSLVGAGVDQKSLTGLRYGPGNGNFFDNHKTGLHDYTNAFGATKGGRDIIV
TTGFDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSS
LPQYRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFS
SNYYCVIPVAFFQAGSSITMRNADPTHPNTNSDAFLSTVDNVYVTSFTSSDAGGYYFKVV
HWYIPKK*kikkyk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR572 (CHR572Q) /CSM/CH/CHR5-C/CHR572Q.Seq.d/ 2335 0.0
SHG726 (SHG726Q) /CSM/SH/SHG7-B/SHG726Q.Seq.d/ 1427 0.0
AHA607 (AHA607Q) /CSM/AH/AHA6-A/AHA607Q.Seq.d/ 1427 0.0
SHK171 (SHK171Q) /CSM/SH/SHK1-C/SHK171Q.Seq.d/ 1425 0.0
SHA662 (SHA662Q) /CSM/SH/SHA6-C/SHA662Q.Seq.d/ 1425 0.0
CHI322 (CHI322Q) /CSM/CH/CHI3-A/CHI322Q.Seq.d/ 1425 0.0
SHL880 (SHL880Q) /CSM/SH/SHL8-D/SHL880Q.Seq.d/ 1423 0.0
AHM165 (AHM165Q) /CSM/AH/AHM1-C/AHM165Q.Seq.d/ 1423 0.0
SHK412 (SHK412Q) /CSM/SH/SHK4-A/SHK412Q.Seq.d/ 1421 0.0
SHG531 (SHG531Q) /CSM/SH/SHG5-B/SHG531Q.Seq.d/ 1421 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BQ022375|BQ022375.1 UI-1-BB1p-akh-h-10-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA cloneUI-1-BB1p-akh-h-10-0-UI 3', mRNA sequence. 48 0.48 1
AC150654|AC150654.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094L06, complete sequence. 36 0.96 2
AC114012|AC114012.5 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, complete sequence. 36 0.98 2
AC105770|AC105770.2 Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence. 36 0.98 2
CV912682|CV912682.1 PF007G3 sporangia, cleaving Phytophthora infestans cDNA, mRNA sequence. 46 1.9 1
BB047825|BB047825.1 Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430562L22, 3' end partial sequence. 46 1.9 1
AC099203|AC099203.4 Rattus norvegicus clone CH230-126K21, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces. 46 1.9 1
AC099201|AC099201.6 Rattus norvegicus clone CH230-123L16, WORKING DRAFT SEQUENCE, 7 unordered pieces. 46 1.9 1
BH078802|BH078802.1 RPCI-24-244F17.TV RPCI-24 Mus musculus genomic clone RPCI-24-244F17 , DNA sequence. 46 1.9 1
AC148334|AC148334.3 Mus musculus BAC clone RP23-213L20 from chromosome 13, complete sequence. 46 1.9 1
dna update 2005.11.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 80 1e-13
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 63 2e-08
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC... 59 4e-07
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 59 4e-07
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei... 53 3e-05
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD... 53 3e-05
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD... 53 3e-05
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD... 53 3e-05
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD... 53 3e-05
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur... 53 3e-05
protein update 2009. 4.12
PSORT

psg: 0.88 gvh: 0.41 alm: 0.40 top: 0.40 tms: 0.00 mit: 0.37 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for CHR572 is cyt

5' end seq. ID CHR572F
5' end seq.
>CHR572F.Seq
AATTATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATTAATATTA
ATAAAATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTAT
TAAATATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATT
TAGATTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAA
TTTCTTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTG
CTGATGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTA
CCAATCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTG
TACCATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAA
ATACCTTTGCCTATAACATTCCATTGATTAAACAAGTTTGGTGTTTCATCAGGCTCATCT
ATACTTACAGTTAGAATTAGTGTTGATTTGNNNNNNNNNN
Length of 5' end seq. 580
3' end seq. ID CHR572Z
3' end seq.
>CHR572Z.Seq
NNNNNNNNNNTGGAGAGTGNAGGTAAATGTGGTAGTCTTGTTGGTGCCGGAGTTGATCAA
AAATCACTCACTGGTCTTAGATATGGTCCAGGTAATGGTAATTTCTTTGATAATCATAAA
ACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATT
GTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCA
ACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACC
CCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCT
TCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAA
GATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCA
ACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTC
AGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACA
ATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTT
GATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGTGGTTATTATTTTAAGGTT
GTTCATTGGTATATTCCAAAAAAATAAAAAATAAAAAAATATAAAT
Length of 3' end seq. 766
Connected seq. ID CHR572P
Connected seq.
>CHR572P.Seq
AATTATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATTAATATTA
ATAAAATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTAT
TAAATATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATT
TAGATTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAA
TTTCTTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTG
CTGATGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTA
CCAATCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTG
TACCATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAA
ATACCTTTGCCTATAACATTCCATTGATTAAACAAGTTTGGTGTTTCATCAGGCTCATCT
ATACTTACAGTTAGAATTAGTGTTGATTTG----------TGGAGAGTGNAGGTAAATGT
GGTAGTCTTGTTGGTGCCGGAGTTGATCAAAAATCACTCACTGGTCTTAGATATGGTCCA
GGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTCATGACTATACCAATGCTTTT
GGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCA
TTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCT
TTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGT
CTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTT
TGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATC
ACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCA
AATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTT
GCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAAT
ACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCT
TCTGATGCTGGTGGTTATTATTTTAAGGTTGTTCATTGGTATATTCCAAAAAAATAAAAA
ATAAAAAAATATAAAT
Length of connected seq. 1326
Full length Seq ID -
Full length Seq. -
Length of full length seq. -