>CHR569 (CHR569Q) /CSM/CH/CHR5-C/CHR569Q.Seq.d/
XXXXXXXXXXCCAATGGGATATGGTATTGCAAATGCATTAGTTTTTAAGAAAGTTATTAA
GAATTTAGGTTTAGAACAATGTAAATTATTAGCATCAGCAGCTGCACCAATTTCAATTGA
TACTTTAGAGTTTTTCTTGGGTTTAGGTATTACAGTTTGTGAAGCCTATGGTATGAGTGA
ACTTAGTGGTCCACAAAGTGTTGGTTATCCACTCAATCGTACAGGTTCAGTTGGTAAAAC
AATGCAAGGTAGTGAAGTGATTGTCGATAGTGATGGTGAAATCTTGGTTAGAGGTCCAAA
CTGTTTTGTTGGTTATTATAAGAATGATGAGGCCTCAAAGGAAACCATTGATAAAGATGG
TTGGGTTCATACTGGTGATGTCGGTCATATCGATAAGGATGGTTTCATTTTCATCACCGA
TAGAAAGAAAGAGTTAATCATTACAGCAGGTGGTGAAAATATTTCNCCAACCTTGATNNA
AGGTTTCATTNGTCAAATCATTGGTGTTGANCAAGCCGTAGTAATTGGTGATCGTCAAAA
ATATTTAGTTGCTTTGGTCNCTGTCNATGNTGATTTATTCNAGTTATTACCAGGTCAAGG
T

---MGYGIANALVFKKVIKNLGLEQCKLLASAAAPISIDTLEFFLGLGITVCEAYGMSEL
SGPQSVGYPLNRTGSVGKTMQGSEVIVDSDGEILVRGPNCFVGYYKNDEASKETIDKDGW
VHTGDVGHIDKDGFIFITDRKKELIITAGGENISPTLXXGFIXQIIGVXQAVVIGDRQKY
LVALVXVXXDLFXLLPGQG

Frame A:
---qwdmvlqmh*flrkllri*v*nnvny*hqqlhqfqlil*sfswv*vlqfvkpmv*vn
lvvhkvlvihsivqvqlvkqckvvk*lsivmvkswlevqtvllviirmmrpqrkplikmv
gfilvmsvisirmvsfsspierks*slqqvvkifxqp*xkvsxvkslvlxkp**lvivkn
i*llwslsmxiyssyyqvk


Frame B:
---ngiwyckcisf*esy*efrfrtm*iisissctnfn*yfrvflgfryysl*slwye*t
*wstkcwlstqsyrfsw*nnar**sdcr**w*nlg*rsklfcwll*e**glkgnh**rwl
gsyw*crsyr*gwfhfhhr*kervnhysrw*kyfxnldxrfhxsnhwc*xsrsnw*sski
fscfgxcxx*fixvitrsr


Frame C:
---MGYGIANALVFKKVIKNLGLEQCKLLASAAAPISIDTLEFFLGLGITVCEAYGMSEL
SGPQSVGYPLNRTGSVGKTMQGSEVIVDSDGEILVRGPNCFVGYYKNDEASKETIDKDGW
VHTGDVGHIDKDGFIFITDRKKELIITAGGENISPTLXXGFIXQIIGVXQAVVIGDRQKY
LVALVXVXXDLFXLLPGQG

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR569 (CHR569Q) /CSM/CH/CHR5-C/CHR569Q.Seq.d/                       1118   0.0
VFJ765 (VFJ765Q) /CSM/VF/VFJ7-C/VFJ765Q.Seq.d/                       1053   0.0
AFJ571 (AFJ571Q) /CSM/AF/AFJ5-C/AFJ571Q.Seq.d/                        973   0.0
VHK420 (VHK420Q) /CSM/VH/VHK4-A/VHK420Q.Seq.d/                        904   0.0
VHL815 (VHL815Q) /CSM/VH/VHL8-A/VHL815Q.Seq.d/                        714   0.0
CHJ361 (CHJ361Q) /CSM/CH/CHJ3-C/CHJ361Q.Seq.d/                        519   e-146
VHB722 (VHB722Q) /CSM/VH/VHB7-A/VHB722Q.Seq.d/                        511   e-144
CHG165 (CHG165Q) /CSM/CH/CHG1-C/CHG165Q.Seq.d/                        426   e-118
VHL740 (VHL740Q) /CSM/VH/VHL7-B/VHL740Q.Seq.d/                        420   e-116
AHD785 (AHD785Q) /CSM/AH/AHD7-D/AHD785Q.Seq.d/                        418   e-116

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CD483938|CD483938.1 atr01-28ms2-e11 Atr01 Amborella trichopoda cDNA cloneatr01-28ms2-e11 5', mRNA sequence.    38   0.16   2
CD483457|CD483457.1 atr01-8ms1-g08 Atr01 Amborella trichopoda cDNA clone atr01-8ms1-g08 5', mRNA sequence.    38   0.16   2
CD482913|CD482913.1 atr01-3ms1-a01 Atr01 Amborella trichopoda cDNA clone atr01-3ms1-a01 5', mRNA sequence.    38   0.16   2
AV815209|AV815209.1 Arabidopsis thaliana cDNA clone:RAFL09-85-N04, 3'-end.    48   0.21   1
BX836070|BX836070.1 Arabidopsis thaliana Full-length cDNA 3PRIM end of clone  GSLTPGH4ZD09 of Hormone Treated Callus of strain col-0 of  Arabidopsis thaliana (thale cress).    48   0.21   1
AX505869|AX505869.1 Sequence 564 from Patent WO0216655.            48   0.21   1
AE009951|AE009951.2 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome.    48   0.21   1
AY099747|AY099747.1 Arabidopsis thaliana 4-coumarate:CoA ligase 1 (At1g51680) mRNA, complete cds.    48   0.21   1
AY133582|AY133582.1 Arabidopsis thaliana At1g51680/F19C24_11 mRNA, complete cds.    48   0.21   1
U18675|U18675.1 Arabidopsis thaliana 4-coumarate--coenzyme A ligase (At4CL1) mRNA, complete cds.    48   0.21   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ720017_1(AJ720017|pid:none) Gallus gallus mRNA for hypothetica...   160   3e-38
(Q7ZYC4) RecName: Full=Long-chain-fatty-acid--CoA ligase ACSBG2;...   154   1e-36
BC166192_1(BC166192|pid:none) Xenopus tropicalis hypothetical pr...   153   4e-36
AP006618_2925(AP006618|pid:none) Nocardia farcinica IFM 10152 DN...   144   1e-33
CP000509_3567(CP000509|pid:none) Nocardioides sp. JS614, complet...   144   2e-33
CP001322_66(CP001322|pid:none) Desulfatibacillum alkenivorans AK...   144   2e-33
AM746676_8711(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...   142   5e-33
CP000859_2999(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ...   140   3e-32
CU458896_1845(CU458896|pid:none) Mycobacterium abscessus chromos...   139   4e-32
CP000088_1029(CP000088|pid:none) Thermobifida fusca YX, complete...   137   3e-31

 psg: 0.87  gvh: 0.54  alm: 0.34  top: 0.67  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system

>> prediction for CHR569 is cyt

>CHR569Z.Seq
NNNNNNNNNNCCAATGGGATATGGTATTGCAAATGCATTAGTTTTTAAGAAAGTTATTAA
GAATTTAGGTTTAGAACAATGTAAATTATTAGCATCAGCAGCTGCACCAATTTCAATTGA
TACTTTAGAGTTTTTCTTGGGTTTAGGTATTACAGTTTGTGAAGCCTATGGTATGAGTGA
ACTTAGTGGTCCACAAAGTGTTGGTTATCCACTCAATCGTACAGGTTCAGTTGGTAAAAC
AATGCAAGGTAGTGAAGTGATTGTCGATAGTGATGGTGAAATCTTGGTTAGAGGTCCAAA
CTGTTTTGTTGGTTATTATAAGAATGATGAGGCCTCAAAGGAAACCATTGATAAAGATGG
TTGGGTTCATACTGGTGATGTCGGTCATATCGATAAGGATGGTTTCATTTTCATCACCGA
TAGAAAGAAAGAGTTAATCATTACAGCAGGTGGTGAAAATATTTCNCCAACCTTGATNNA
AGGTTTCATTNGTCAAATCATTGGTGTTGANCAAGCCGTAGTAATTGGTGATCGTCAAAA
ATATTTAGTTGCTTTGGTCNCTGTCNATGNTGATTTATTCNAGTTATTACCAGGTCAAGG
T