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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR566
Library CH
(Link to library)
Clone ID CHR566
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15033-1
Original site URL
Representative seq. ID CHR566P
(Link to Original site)
Representative DNA sequence 
>CHR566 (CHR566Q) /CSM/CH/CHR5-C/CHR566Q.Seq.d/
ATTAGCACCATTTCCAAGTGCACCAAGAGAAGATGTTGATGTATTAAATTGTTATGGTGG
AATTGATAATATACCAATAGGTGATAATTCAACATATATTAGTGAATTAGTTAATGGAGC
AAGAGTTGGATGGAATCATTATACAACAAATGTTGATGGTATGGTTAATTTAAATTTTTC
AAATAATGTAAATTGGGATTTAATAAATAATTGGGCAGGATCAAGTGGCACATATTTTAG
TGGTTGGGGAATTTCAACATTTTCATTGAATACTAGTGAAACCATTTTAGTTACATGTTC
AGGTATTGCAAAGTTTTGGATAGATTCAACAGTGATGCAAGGTGATTCATATGGATTGGG
ATTACAATTTAATTCAATTCAATTATCAAGTGGTACACATCAATTAAAAGTTAGAATCAT
TGGATCAGAGGCAGCAAGTTATCAATGTGAAATCATAACAACCAAAGAGGAGCAATCAAT
TTTCATAGTCTATGAAAATACGATTGTACCAGATATAGTTGATAATGAATTTTCATCACC
TTTTATCTCAATTTCAGTTTTGAATATATTGAATCAACXXXXXXXXXXAATGTAAAAAGA
TTTGGTTTCAATTCATTCAATGAGAAACCAAATCAAGTCATTATCGATGGTCAAAAATTT
AATTATATTCAACTACCATCACATTATTGTACCGATGGTACAAAGGTTAAAAATAATAAA
AAGAGTGGTTCAAGTGTAGTTTGGTCAATTTGTAATGATGGTAATGATTGGATGTGGAGT
GAAAGATCACCATTAAATTCTGGTCCAATGGTACAAATATTAGATTATCCAATTTTAATT
GTTTATGGTACAATTGGAAGTGAACAACAAACCAATCAACGTCAACAATCTGCAGTTTAT
TTATCAAATGTTTTAATGTATCAAATGAGATATTCAATAAATGTTTTAGAGGATACTCAA
TTCACAAATGACTTATTCACAACTTATAATGTAATATTTATGGGAGGCCCACAAACAAAT
AAAGCAGTTTACTCAATTCAATCAGTTTTACCATCACCAATTGGTTTCCATGGTTCAAGT
GATAATATGTCATTCTCTTTAAATGATGATTCAAATATGTTTTCAGGTCCTTCTGTTGGT
TTATTGTTTTTATCATCATGTTATTCACCAGAGGCCATTATGAAAATTACACCAAAAGAA
CGTTATACTCAAGCTAGACAAGGTTGTATGCTTACAGTTATTGAGGGTACTGATACTATT
GGTTTCCAAAATAGTCTTTTCAATTTCCCAACTAAATCATCTTTCCCAATGCCAGATTTC
ATGATATTAGGTCCAAATTTTGGTTATCAAGGTGTATCGGGTGCTAATGCTCTTGGATTT
TGGGATAATAATGGCAACTATCGACCTTTCTTATATAACTTCAATTTTAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
LAPFPSAPREDVDVLNCYGGIDNIPIGDNSTYISELVNGARVGWNHYTTNVDGMVNLNFS
NNVNWDLINNWAGSSGTYFSGWGISTFSLNTSETILVTCSGIAKFWIDSTVMQGDSYGLG
LQFNSIQLSSGTHQLKVRIIGSEAASYQCEIITTKEEQSIFIVYENTIVPDIVDNEFSSP
FISISVLNILNQ---

---NVKRFGFNSFNEKPNQVIIDGQKFNYIQLPSHYCTDGTKVKNNKKSGSSVVWSICND
GNDWMWSERSPLNSGPMVQILDYPILIVYGTIGSEQQTNQRQQSAVYLSNVLMYQMRYSI
NVLEDTQFTNDLFTTYNVIFMGGPQTNKAVYSIQSVLPSPIGFHGSSDNMSFSLNDDSNM
FSGPSVGLLFLSSCYSPEAIMKITPKERYTQARQGCMLTVIEGTDTIGFQNSLFNFPTKS
SFPMPDFMILGPNFGYQGVSGANALGFWDNNGNYRPFLYNFNFK
Translated Amino Acid sequence (All Frames) 
Frame A:
istiskctkrrc*cikllwwn**ytnr**fniy**is*wskswmeslynkc*wyg*fkff
k*cklgfnk*lgrikwhif*wlgnfnifiey**nhfsymfryckvldrfnsdar*fiwig
iti*fnsiikwytsiks*nhwirgsklsm*nhnnqrgainfhsl*kydctrys***ifit
fylnfsfeyies---

---NVKRFGFNSFNEKPNQVIIDGQKFNYIQLPSHYCTDGTKVKNNKKSGSSVVWSICND
GNDWMWSERSPLNSGPMVQILDYPILIVYGTIGSEQQTNQRQQSAVYLSNVLMYQMRYSI
NVLEDTQFTNDLFTTYNVIFMGGPQTNKAVYSIQSVLPSPIGFHGSSDNMSFSLNDDSNM
FSGPSVGLLFLSSCYSPEAIMKITPKERYTQARQGCMLTVIEGTDTIGFQNSLFNFPTKS
SFPMPDFMILGPNFGYQGVSGANALGFWDNNGNYRPFLYNFNFK

Frame B:
LAPFPSAPREDVDVLNCYGGIDNIPIGDNSTYISELVNGARVGWNHYTTNVDGMVNLNFS
NNVNWDLINNWAGSSGTYFSGWGISTFSLNTSETILVTCSGIAKFWIDSTVMQGDSYGLG
LQFNSIQLSSGTHQLKVRIIGSEAASYQCEIITTKEEQSIFIVYENTIVPDIVDNEFSSP
FISISVLNILNQ---

---m*kdlvsihsmrnqikslsmvknliifnyhhiivpmvqrlkiikrvvqv*fgqfvmm
vmigcgvkdhh*ilvqwyky*iiqf*lfmvqlevnnkpinvnnlqfiyqmf*cik*diq*
mf*rilnsqmtysqlim*ylweahkqikqftqfnqfyhhqlvsmvqviichsl*mmiqic
fqvlllvycfyhhvihqrpl*klhqknvilkldkvvclqllrvlillvskivfsisqlnh
lsqcqis*y*vqilvikvyrvlmlldfgiimatidlsyitsil

Frame C:
*hhfqvhqekmlmy*ivmveliiyq*viiqhilvn*lmeqeldgiiiqqmlmvwli*ifq
im*igi**iigqdqvahilvvgefqhfh*ilvkpf*lhvqvlqsfg*iqq*ckvihmdwd
ynliqfnyqvvhin*klesldqrqqvinvks*qpkrsnqfs*smkirlyqi*limnfhhl
lsqfqf*iy*in---

---ckkiwfqfiq*etksshyrwski*lysttitllyrwykg*k**kewfkcslvnl**w
**ldve*kitikfwsngtnirlsnfnclwynwk*ttnqststicslfikcfnvsneifnk
cfrgysihk*lihnl*cniygrptnk*ssllnsisftitnwfpwfk**yvilfk**fkyv
frsfcwfivfiimlftrghyenytkrtlyss*trlyaysy*gy*yywfpk*sfqfpn*ii
fpnarfhdirskfwlsrcigc*cswilg**wqlstfli*lqf*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR566 (CHR566Q) /CSM/CH/CHR5-C/CHR566Q.Seq.d/                       2777   0.0
VHP233 (VHP233Q) /CSM/VH/VHP2-B/VHP233Q.Seq.d/                       1633   0.0
VHC878 (VHC878Q) /CSM/VH/VHC8-D/VHC878Q.Seq.d/                       1626   0.0
CHM432 (CHM432Q) /CSM/CH/CHM4-B/CHM432Q.Seq.d/                       1598   0.0
CHI245 (CHI245Q) /CSM/CH/CHI2-B/CHI245Q.Seq.d/                       1580   0.0
CHS314 (CHS314Q) /CSM/CH/CHS3-A/CHS314Q.Seq.d/                       1568   0.0
VHD334 (VHD334Q) /CSM/VH/VHD3-B/VHD334Q.Seq.d/                       1566   0.0
CHI509 (CHI509Q) /CSM/CH/CHI5-A/CHI509Q.Seq.d/                       1566   0.0
VHH556 (VHH556Q) /CSM/VH/VHH5-C/VHH556Q.Seq.d/                       1542   0.0
VHP538 (VHP538Q) /CSM/VH/VHP5-B/VHP538Q.Seq.d/                       1540   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    34   0.059  11
BX088559|BX088559.18 Zebrafish DNA sequence from clone DKEY-238P16 in linkage group 7.    34   0.077  2
AF474339|AF474339.1 Dictyostelium discoideum ABC transporter ABCC.7 (abcC7) gene, complete cds.    36   0.093  4
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   0.22   15
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    36   0.40   7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   0.58   17
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    34   0.88   17
AR659687|AR659687.1 Sequence 728 from patent US 6900016.           38   0.95   5
AC010900|AC010900.12 Homo sapiens BAC clone RP11-544H14 from 2, complete sequence.    32   1.0    2
AC080084|AC080084.3 Homo sapiens chromosome 2 clone RP11-605K11, WORKING DRAFT SEQUENCE, 29 unordered pieces.    32   1.0    2
dna update 2005.11.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017341_214(AE017341|pid:none) Cryptococcus neoformans var. neo...    46   0.004
AE008691_1920(AE008691|pid:none) Thermoanaerobacter tengcongensi...    44   0.010
CP000267_695(CP000267|pid:none) Rhodoferax ferrireducens T118, c...    39   0.44
AC116957_137(AC116957|pid:none) Dictyostelium discoideum chromos...    39   0.57
AB1151(AB1151) internalin proteins, probable peptidoglycan bound...    38   0.98
CP000644_3056(CP000644|pid:none) Aeromonas salmonicida subsp. sa...    37   1.7
CR940347_826(CR940347|pid:none) Theileria annulata strain Ankara...    36   3.7
CP000269_2198(CP000269|pid:none) Janthinobacterium sp. Marseille...    35   6.3
AE014186_272(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   8.3
protein update 2009. 4.12
PSORT 

 psg: 0.75  gvh: 0.30  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHR566 is cyt
5' end seq. ID CHR566F
5' end seq. 
>CHR566F.Seq
ATTAGCACCATTTCCAAGTGCACCAAGAGAAGATGTTGATGTATTAAATTGTTATGGTGG
AATTGATAATATACCAATAGGTGATAATTCAACATATATTAGTGAATTAGTTAATGGAGC
AAGAGTTGGATGGAATCATTATACAACAAATGTTGATGGTATGGTTAATTTAAATTTTTC
AAATAATGTAAATTGGGATTTAATAAATAATTGGGCAGGATCAAGTGGCACATATTTTAG
TGGTTGGGGAATTTCAACATTTTCATTGAATACTAGTGAAACCATTTTAGTTACATGTTC
AGGTATTGCAAAGTTTTGGATAGATTCAACAGTGATGCAAGGTGATTCATATGGATTGGG
ATTACAATTTAATTCAATTCAATTATCAAGTGGTACACATCAATTAAAAGTTAGAATCAT
TGGATCAGAGGCAGCAAGTTATCAATGTGAAATCATAACAACCAAAGAGGAGCAATCAAT
TTTCATAGTCTATGAAAATACGATTGTACCAGATATAGTTGATAATGAATTTTCATCACC
TTTTATCTCAATTTCAGTTTTGAATATATTGAATCAACNNNNNNNNNN
Length of 5' end seq. 588
3' end seq. ID CHR566Z
3' end seq. 
>CHR566Z.Seq
NNNNNNNNNNAATGTAAAAAGATTTGGTTTCAATTCATTCAATGAGAAACCAAATCAAGT
CATTATCGATGGTCAAAAATTTAATTATATTCAACTACCATCACATTATTGTACCGATGG
TACAAAGGTTAAAAATAATAAAAAGAGTGGTTCAAGTGTAGTTTGGTCAATTTGTAATGA
TGGTAATGATTGGATGTGGAGTGAAAGATCACCATTAAATTCTGGTCCAATGGTACAAAT
ATTAGATTATCCAATTTTAATTGTTTATGGTACAATTGGAAGTGAACAACAAACCAATCA
ACGTCAACAATCTGCAGTTTATTTATCAAATGTTTTAATGTATCAAATGAGATATTCAAT
AAATGTTTTAGAGGATACTCAATTCACAAATGACTTATTCACAACTTATAATGTAATATT
TATGGGAGGCCCACAAACAAATAAAGCAGTTTACTCAATTCAATCAGTTTTACCATCACC
AATTGGTTTCCATGGTTCAAGTGATAATATGTCATTCTCTTTAAATGATGATTCAAATAT
GTTTTCAGGTCCTTCTGTTGGTTTATTGTTTTTATCATCATGTTATTCACCAGAGGCCAT
TATGAAAATTACACCAAAAGAACGTTATACTCAAGCTAGACAAGGTTGTATGCTTACAGT
TATTGAGGGTACTGATACTATTGGTTTCCAAAATAGTCTTTTCAATTTCCCAACTAAATC
ATCTTTCCCAATGCCAGATTTCATGATATTAGGTCCAAATTTTGGTTATCAAGGTGTATC
GGGTGCTAATGCTCTTGGATTTTGGGATAATAATGGCAACTATCGACCTTTCTTATATAA
CTTCAATTTTAAA
Length of 3' end seq. 853
Connected seq. ID CHR566P
Connected seq. 
>CHR566P.Seq
ATTAGCACCATTTCCAAGTGCACCAAGAGAAGATGTTGATGTATTAAATTGTTATGGTGG
AATTGATAATATACCAATAGGTGATAATTCAACATATATTAGTGAATTAGTTAATGGAGC
AAGAGTTGGATGGAATCATTATACAACAAATGTTGATGGTATGGTTAATTTAAATTTTTC
AAATAATGTAAATTGGGATTTAATAAATAATTGGGCAGGATCAAGTGGCACATATTTTAG
TGGTTGGGGAATTTCAACATTTTCATTGAATACTAGTGAAACCATTTTAGTTACATGTTC
AGGTATTGCAAAGTTTTGGATAGATTCAACAGTGATGCAAGGTGATTCATATGGATTGGG
ATTACAATTTAATTCAATTCAATTATCAAGTGGTACACATCAATTAAAAGTTAGAATCAT
TGGATCAGAGGCAGCAAGTTATCAATGTGAAATCATAACAACCAAAGAGGAGCAATCAAT
TTTCATAGTCTATGAAAATACGATTGTACCAGATATAGTTGATAATGAATTTTCATCACC
TTTTATCTCAATTTCAGTTTTGAATATATTGAATCAAC----------AATGTAAAAAGA
TTTGGTTTCAATTCATTCAATGAGAAACCAAATCAAGTCATTATCGATGGTCAAAAATTT
AATTATATTCAACTACCATCACATTATTGTACCGATGGTACAAAGGTTAAAAATAATAAA
AAGAGTGGTTCAAGTGTAGTTTGGTCAATTTGTAATGATGGTAATGATTGGATGTGGAGT
GAAAGATCACCATTAAATTCTGGTCCAATGGTACAAATATTAGATTATCCAATTTTAATT
GTTTATGGTACAATTGGAAGTGAACAACAAACCAATCAACGTCAACAATCTGCAGTTTAT
TTATCAAATGTTTTAATGTATCAAATGAGATATTCAATAAATGTTTTAGAGGATACTCAA
TTCACAAATGACTTATTCACAACTTATAATGTAATATTTATGGGAGGCCCACAAACAAAT
AAAGCAGTTTACTCAATTCAATCAGTTTTACCATCACCAATTGGTTTCCATGGTTCAAGT
GATAATATGTCATTCTCTTTAAATGATGATTCAAATATGTTTTCAGGTCCTTCTGTTGGT
TTATTGTTTTTATCATCATGTTATTCACCAGAGGCCATTATGAAAATTACACCAAAAGAA
CGTTATACTCAAGCTAGACAAGGTTGTATGCTTACAGTTATTGAGGGTACTGATACTATT
GGTTTCCAAAATAGTCTTTTCAATTTCCCAACTAAATCATCTTTCCCAATGCCAGATTTC
ATGATATTAGGTCCAAATTTTGGTTATCAAGGTGTATCGGGTGCTAATGCTCTTGGATTT
TGGGATAATAATGGCAACTATCGACCTTTCTTATATAACTTCAATTTTAAA
Length of connected seq. 1421
Full length Seq ID -
Full length Seq. -
Length of full length seq. -