>CHR559 (CHR559Q) /CSM/CH/CHR5-C/CHR559Q.Seq.d/
XXXXXXXXXXTATACCATCATATACATCCNGATAGATACTATGATGTAACTCCAATTGGT
GTTGTAAATGGTTTAGCATATACTAAAAAGGGTGGTGCAACATTATATATTGAAAGTACT
TCTGAAGAAATTCAAAAACCTTTATCATCTCTACCACCATCACAACAACAACAAAACCAA
TTGGAACCATCCATTAAAACTACAGGTAATTTGGGTGATGTCATGTCAGAATCGTCAACT
ATTGCCTACACTTTTGCTAAAAACTTTTTATACGAATTGGATCCTAATAATACATTCTTC
TCAAATCATAATATTCATTTACATTCACCACAGGGTAACATACCAAAGGATGGTCCATCT
GCAGGTGTTACAATGGTAACTTCATTATTATCATTGGCTTTAAATGAACCAGTTCAAAAT
AATTTAGGTATGACTGGTGAAGTTACAATCACTGGTAAAGTCATTACTATTGGCGGTGTA
AAAGAGAAAACAATTGCTGCCAAAAGATCAGGTTTAACTTCTGTTATTTTCCCTATTAAT
AATAGAATCAATTTCGAAGAGTTACCAACTTATATTAAAAACGATATTGATGTTACATA

---YHHIHPDRYYDVTPIGVVNGLAYTKKGGATLYIESTSEEIQKPLSSLPPSQQQQNQL
EPSIKTTGNLGDVMSESSTIAYTFAKNFLYELDPNNTFFSNHNIHLHSPQGNIPKDGPSA
GVTMVTSLLSLALNEPVQNNLGMTGEVTITGKVITIGGVKEKTIAAKRSGLTSVIFPINN
RINFEELPTYIKNDIDVT

Frame A:
---ipsytsx*il*cnsnwcckwfsiy*kgwcniiy*kyf*rnsktfiisttittttkpi
gtih*nyr*fg*chvrivnyclhfc*klfirigs**yillks*ysftfttg*htkgwsic
rcyngnfiiiigfk*tssk*frydw*synhw*shyywrckrennccqkirfnfcyfpy**
*nqfrrvtnly*kry*cyi


Frame B:
---YHHIHPDRYYDVTPIGVVNGLAYTKKGGATLYIESTSEEIQKPLSSLPPSQQQQNQL
EPSIKTTGNLGDVMSESSTIAYTFAKNFLYELDPNNTFFSNHNIHLHSPQGNIPKDGPSA
GVTMVTSLLSLALNEPVQNNLGMTGEVTITGKVITIGGVKEKTIAAKRSGLTSVIFPINN
RINFEELPTYIKNDIDVT


Frame C:
---tiiyixidtmm*lqlvl*mv*hilkrvvqhyilkvllkkfknlyhlyhhhnnnktnw
nhplklqviwvmscqnrqllptlllktfytnwiliihssqiiifiyihhrvtyqrmvhlq
vlqw*lhyyhwl*mnqfkii*v*lvklqslvkslllav*krkqllpkdqv*lllfsllii
esisksyqlilktilmlh

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR559 (CHR559Q) /CSM/CH/CHR5-C/CHR559Q.Seq.d/                       1162   0.0
VHK245 (VHK245Q) /CSM/VH/VHK2-B/VHK245Q.Seq.d/                       1152   0.0
CHI845 (CHI845Q) /CSM/CH/CHI8-B/CHI845Q.Seq.d/                       1152   0.0
AHL836 (AHL836Q) /CSM/AH/AHL8-B/AHL836Q.Seq.d/                       1144   0.0
CHF396 (CHF396Q) /CSM/CH/CHF3-D/CHF396Q.Seq.d/                        993   0.0
AHQ434 (AHQ434Q) /CSM/AH/AHQ4-B/AHQ434Q.Seq.d/                        896   0.0
SLG706 (SLG706Q) /CSM/SL/SLG7-A/SLG706Q.Seq.d/                         44   0.002
CHI455 (CHI455Q) /CSM/CH/CHI4-C/CHI455Q.Seq.d/                         44   0.002
VSJ682 (VSJ682Q) /CSM/VS/VSJ6-D/VSJ682Q.Seq.d/                         38   0.15
VHO826 (VHO826Q) /CSM/VH/VHO8-B/VHO826Q.Seq.d/                         38   0.15

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CR382125|CR382125.1 Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL  Y-1140 of Kluyveromyces lactis.    72   1e-08  1
AL424723|AL424723.1 T3 end of clone XAZ0AA002A10 of library XAZ0AA from strain CBS 712  of Kluyveromyces marxianus.    60   6e-05  1
CR380956|CR380956.1 Candida glabrata strain CBS138 chromosome J complete sequence.    58   2e-04  1
CN762192|CN762192.1 ID0AAA3CH06RM1 ApMS Acyrthosiphon pisum cDNA clone ID0AAA3CH06 5', mRNA sequence.    46   4e-04  2
CN762191|CN762191.1 ID0AAA3CH06FM1 ApMS Acyrthosiphon pisum cDNA clone ID0AAA3CH06 5', mRNA sequence.    46   4e-04  2
AC094867|AC094867.5 Rattus norvegicus clone CH230-5N14, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    52   0.013  1
DQ062150|DQ062150.2 Stylosanthes guianensis 9-cis-epoxycarotenoid dioxygenase (NCED1) mRNA, complete cds.    50   0.053  1
CV671350|CV671350.1 RE-3-SJ-C_G08_RE-3-SJ-CG08-T7 Schistosoma japonicum reverse cDNA Schistosoma japonicum cDNA, mRNA sequence.    48   0.21   1
BU773947|BU773947.1 SJEGBA10 SJE Schistosoma japonicum cDNA, mRNA sequence.    48   0.21   1
AC142419|AC142419.2 Rattus norvegicus clone CH230-479N16, WORKING DRAFT SEQUENCE, 29 unordered pieces.    48   0.21   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296_3370(AE014296|pid:none) Drosophila melanogaster chromos...   197   1e-49
AY051787_1(AY051787|pid:none) Drosophila melanogaster LD30525 fu...   197   1e-49
AE014296_3371(AE014296|pid:none) Drosophila melanogaster chromos...   197   1e-49
FB908473_1(FB908473|pid:none) Sequence 127746 from Patent WO2008...   190   2e-47
AY183658_1(AY183658|pid:none) Oryza sativa (indica cultivar-grou...   190   2e-47
(Q924S5) RecName: Full=Lon protease homolog, mitochondrial;     ...   189   4e-47
CP001327_437(CP001327|pid:none) Micromonas sp. RCC299 chromosome...   189   6e-47
AC149474_18(AC149474|pid:none) Medicago truncatula clone mth2-12...   188   8e-47
(P93655) RecName: Full=Lon protease homolog 2, mitochondrial;   ...   187   2e-46
AY057488_1(AY057488|pid:none) Arabidopsis thaliana AT5g26860/F2P...   187   2e-46

 psg: 0.75  gvh: 0.52  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for CHR559 is cyt

>CHR559Z.Seq
NNNNNNNNNNTATACCATCATATACATCCNGATAGATACTATGATGTAACTCCAATTGGT
GTTGTAAATGGTTTAGCATATACTAAAAAGGGTGGTGCAACATTATATATTGAAAGTACT
TCTGAAGAAATTCAAAAACCTTTATCATCTCTACCACCATCACAACAACAACAAAACCAA
TTGGAACCATCCATTAAAACTACAGGTAATTTGGGTGATGTCATGTCAGAATCGTCAACT
ATTGCCTACACTTTTGCTAAAAACTTTTTATACGAATTGGATCCTAATAATACATTCTTC
TCAAATCATAATATTCATTTACATTCACCACAGGGTAACATACCAAAGGATGGTCCATCT
GCAGGTGTTACAATGGTAACTTCATTATTATCATTGGCTTTAAATGAACCAGTTCAAAAT
AATTTAGGTATGACTGGTGAAGTTACAATCACTGGTAAAGTCATTACTATTGGCGGTGTA
AAAGAGAAAACAATTGCTGCCAAAAGATCAGGTTTAACTTCTGTTATTTTCCCTATTAAT
AATAGAATCAATTTCGAAGAGTTACCAACTTATATTAAAAACGATATTGATGTTACATA