CHR553
Library CH
(Link to library)
Clone ID CHR553
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16385-1
Original site URL
Representative seq. ID CHR553P
(Link to Original site)
Representative DNA sequence
>CHR553 (CHR553Q) /CSM/CH/CHR5-C/CHR553Q.Seq.d/
AAGTTGGGTATTACAAAGGTGATTGAGGAATTGGAGCCAGAATATGCAAATAATCCAGAT
TTGGCAACACAAAAAGATCTATACGAACAGGAATGTAGATGGGATGAACAAGAACAAATT
GAAAATGCACGTGGTGATATCTCTGATGAAAACCCTGAAGCATTGGTAAAGGCAATCCTT
GATAGAACTGCTGGTGGTCCATTGTATTCTTCATTCACTTCAATCTTAAGATTATTGGCA
AATTCAATCACTGATCAAACAAAGGATCAGTCATTGTCAAACTATTTATTCGTAGAGAAG
GTCATTGGTAAAATGAATAATGGTGAATCTTATCTCGATGATATTGGTACATTTTTTGGT
GGAGGTGGTGGTGGTGATGGTAGTTTAGATATCGCTCATGTATCTGGAGAGAAAGCAGTA
CTCATTCAAAAGGAGATTGAAGATTTAAAGAAACAAAAAAAGAGAGATCAAGATAAATTG
GCAGAGAAAGATAAACTCTTAACTAAATTGGCAAAGAGAATGAGAAAGATGGAAGAGGCA
ATTXXXXXXXXXXAAAGTTTAATGATAAATTTATAATGTCTAAAAAGGATTTGGAAATTG
AAAAATCCATTAAAGATAAATCAACTCAAAGAAAGAATGAAAAGGAGAGAAAAGAAATGG
AGATTAAAAAATCGAAATTGGAAATGATTCATTCGAAATTAAAGAAAATTGGTTCACCTT
CATCCTCCAATAGAATTCTTGCTAGTAATGAATCATCACCAACCTCTTCCACAAGTTCAG
TGGTTCATCAACATGATGATGAAGATGAAGAAACTATCAAAGAGTATATCAATAATCCAA
GTCCATCTCAACAATCAAATTCTTCAGAGGAAGAAGGAATGATGGATGATTTATTGAATT
TAATTCGTGATGGTAATTTCAGAGAATTGAGAAGGATGAATCTTCAACAAAAGAAACCAG
TTAGAACTAAAAGAGTAATTGCTAAACAACCAACTCGTCCACAAGCTTTAGATACACCTT
CTTCAACATATTCTTCAATCTCATCTATATATGATGCTGAACCTCTTGATATGAGTGATC
AAGAAGATGAAGATGAAGAAGAAGAAGAAGATGAAGAGGAGGAAGAAGAAGAAGAGGAAG
GAGATGACGATAATGATAACGATGAAGAAGAAGGTGAAAACTAAAGAAAAAAATAATACA
TTATACTTTATAAAAATACTTAATAAAAATATAAAAATAAAAATATAAAATAAATATGTT
TTTTTTATTTCATTCCTTTA
sequence update 2002.10.25
Translated Amino Acid sequence
KLGITKVIEELEPEYANNPDLATQKDLYEQECRWDEQEQIENARGDISDENPEALVKAIL
DRTAGGPLYSSFTSILRLLANSITDQTKDQSLSNYLFVEKVIGKMNNGESYLDDIGTFFG
GGGGGDGSLDIAHVSGEKAVLIQKEIEDLKKQKKRDQDKLAEKDKLLTKLAKRMRKMEEA
I---

---KFNDKFIMSKKDLEIEKSIKDKSTQRKNEKERKEMEIKKSKLEMIHSKLKKIGSPSS
SNRILASNESSPTSSTSSVVHQHDDEDEETIKEYINNPSPSQQSNSSEEEGMMDDLLNLI
RDGNFRELRRMNLQQKKPVRTKRVIAKQPTRPQALDTPSSTYSSISSIYDAEPLDMSDQE
DEDEEEEEDEEEEEEEEEGDDDNDNDEEEGEN*rkk*yiilyknt**kyknknik*icff
yfipl


Translated Amino Acid sequence (All Frames)
Frame A:
KLGITKVIEELEPEYANNPDLATQKDLYEQECRWDEQEQIENARGDISDENPEALVKAIL
DRTAGGPLYSSFTSILRLLANSITDQTKDQSLSNYLFVEKVIGKMNNGESYLDDIGTFFG
GGGGGDGSLDIAHVSGEKAVLIQKEIEDLKKQKKRDQDKLAEKDKLLTKLAKRMRKMEEA
I---

---kv***iynv*kgfgn*kih*r*inskke*kgekrngd*kieigndsfeikenwftfi
lq*nsc***iitnlfhkfsgsst***r*rnyqrvyq*sksistikffrgrrndg*fiefn
s*w*fqriekdesstkets*n*ksnc*ttnsstsfrytffniffnliyi*c*ts*ye*sr
r*r*rrrrr*rggrrrrgrr*r***r*rrr*klkkkiihytl*kyliki*k*kykinmff
lfhsf

Frame B:
swvlqr*lrnwsqnmqiiqiwqhkkiytnrnvdgmnknklkmhvvislmktlkhw*rqsl
iellvvhcilhslqs*dywqiqslikqrishcqtiys*rrslvk*imvnlismilvhflv
evvvvmvv*islmylerkqysfkrrlki*rnkkreikinwqrkins*lnwqre*erwkrq
---

---KFNDKFIMSKKDLEIEKSIKDKSTQRKNEKERKEMEIKKSKLEMIHSKLKKIGSPSS
SNRILASNESSPTSSTSSVVHQHDDEDEETIKEYINNPSPSQQSNSSEEEGMMDDLLNLI
RDGNFRELRRMNLQQKKPVRTKRVIAKQPTRPQALDTPSSTYSSISSIYDAEPLDMSDQE
DEDEEEEEDEEEEEEEEEGDDDNDNDEEEGEN*rkk*yiilyknt**kyknknik*icff
yfipl

Frame C:
vgyykgd*gigarick*srfgntkrsirtgm*mg*trtn*kctw*yl**kp*sigkgnp*
*ncwwsivffihfnlkiigkfnh*snkgsvivklfirreghw*ne*w*ilsr*ywyifww
rwww*w*fryrsciwressthskgd*rfketkkersr*igrer*tln*igkenekdgrgn
---

---slminl*clkriwklknplkinqlkermkrrekkwrlknrnwk*firn*rklvhlhp
piefllvmnhhqplpqvqwfinmmmkmkklsksisiiqvhlnnqilqrkke*wmiy*i*f
vmvisen*eg*ifnkrnqlelke*llnnqlvhkl*ihllqhilqshlymmlnlli*vikk
mkmkkkkkmkrrkkkkrkemtimitmkkkvktkeknntlyfikilnknikiki*nkyvff
isfl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR553 (CHR553Q) /CSM/CH/CHR5-C/CHR553Q.Seq.d/ 1142 0.0
SLE344 (SLE344Q) /CSM/SL/SLE3-B/SLE344Q.Seq.d/ 1035 0.0
AHD562 (AHD562Q) /CSM/AH/AHD5-C/AHD562Q.Seq.d/ 934 0.0
SHL124 (SHL124Q) /CSM/SH/SHL1-A/SHL124Q.Seq.d/ 785 0.0
SHH357 (SHH357Q) /CSM/SH/SHH3-C/SHH357Q.Seq.d/ 785 0.0
CHP549 (CHP549Q) /CSM/CH/CHP5-C/CHP549Q.Seq.d/ 785 0.0
CHF259 (CHF259Q) /CSM/CH/CHF2-C/CHF259Q.Seq.d/ 785 0.0
AHG540 (AHG540Q) /CSM/AH/AHG5-B/AHG540Q.Seq.d/ 785 0.0
AFF869 (AFF869Q) /CSM/AF/AFF8-C/AFF869Q.Seq.d/ 771 0.0
CHM342 (CHM342Q) /CSM/CH/CHM3-B/CHM342Q.Seq.d/ 496 e-139

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ812734|AJ812734.1 Dictyostelium discoideum mRNA for diaphanous-related formin dDia4 (drf4 gene). 900 0.0 5
BX005191|BX005191.10 Mouse DNA sequence from clone RP23-433C8 on chromosome X. 58 5e-04 1
AC169316|AC169316.1 Bos taurus clone CH240-249J11, *** SEQUENCING IN PROGRESS ***, 23 unordered pieces. 52 0.003 2
AB136235|AB136235.1 Homo sapiens DNA, STS on chromosome 2, D2S0207i, sequence tagged site. 52 0.029 1
AC111443|AC111443.5 Rattus norvegicus clone CH230-192H9, WORKING DRAFT SEQUENCE, 2 unordered pieces. 52 0.029 1
BD309283|BD309283.1 Drug targets in Candida albicans. 52 0.029 1
AJ390516|AJ390516.1 Candida albicans ORF DNA, clone 15c1. 52 0.029 1
AC122059|AC122059.1 Mus musculus BAC clone RP24-468J3 from 1, complete sequence. 52 0.029 1
AC016745|AC016745.6 Homo sapiens BAC clone RP11-480C16 from 2, complete sequence. 52 0.029 1
CF653859|CF653859.1 tac77c12.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to TR:Q00485 Q00485 MINI-COLLAGEN ;, mRNA sequence. 50 0.12 1
dna update 2005.11.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q5TJ55) RecName: Full=Formin-D; AltName: Full=Diaphanous-relate... 288 3e-76
B71609(B71609)hypothetical protein PFB0680w - malaria parasite (... 44 0.015
AE001362_140(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 44 0.015
AE017350_233(AE017350|pid:none) Cryptococcus neoformans var. neo... 39 0.49
CP000499_201(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 38 0.64
AK070973_1(AK070973|pid:none) Oryza sativa Japonica Group cDNA c... 38 0.84
AB011483_16(AB011483|pid:none) Arabidopsis thaliana genomic DNA,... 37 1.1
AY054263_1(AY054263|pid:none) Arabidopsis thaliana AT5g60530/muf... 37 1.1
AL670008_4(AL670008|pid:none) Neurospora crassa DNA linkage grou... 37 1.4
AL031746_7(AL031746|pid:none) Plasmodium falciparum DNA from MAL... 37 1.9
protein update 2009. 4.12
PSORT

psg: 0.52 gvh: 0.16 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.11 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: nuclear
16.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for CHR553 is nuc

5' end seq. ID CHR553F
5' end seq.
>CHR553F.Seq
AAGTTGGGTATTACAAAGGTGATTGAGGAATTGGAGCCAGAATATGCAAATAATCCAGAT
TTGGCAACACAAAAAGATCTATACGAACAGGAATGTAGATGGGATGAACAAGAACAAATT
GAAAATGCACGTGGTGATATCTCTGATGAAAACCCTGAAGCATTGGTAAAGGCAATCCTT
GATAGAACTGCTGGTGGTCCATTGTATTCTTCATTCACTTCAATCTTAAGATTATTGGCA
AATTCAATCACTGATCAAACAAAGGATCAGTCATTGTCAAACTATTTATTCGTAGAGAAG
GTCATTGGTAAAATGAATAATGGTGAATCTTATCTCGATGATATTGGTACATTTTTTGGT
GGAGGTGGTGGTGGTGATGGTAGTTTAGATATCGCTCATGTATCTGGAGAGAAAGCAGTA
CTCATTCAAAAGGAGATTGAAGATTTAAAGAAACAAAAAAAGAGAGATCAAGATAAATTG
GCAGAGAAAGATAAACTCTTAACTAAATTGGCAAAGAGAATGAGAAAGATGGAAGAGGCA
ATTNNNNNNNNNN
Length of 5' end seq. 553
3' end seq. ID CHR553Z
3' end seq.
>CHR553Z.Seq
NNNNNNNNNNAAAGTTTAATGATAAATTTATAATGTCTAAAAAGGATTTGGAAATTGAAA
AATCCATTAAAGATAAATCAACTCAAAGAAAGAATGAAAAGGAGAGAAAAGAAATGGAGA
TTAAAAAATCGAAATTGGAAATGATTCATTCGAAATTAAAGAAAATTGGTTCACCTTCAT
CCTCCAATAGAATTCTTGCTAGTAATGAATCATCACCAACCTCTTCCACAAGTTCAGTGG
TTCATCAACATGATGATGAAGATGAAGAAACTATCAAAGAGTATATCAATAATCCAAGTC
CATCTCAACAATCAAATTCTTCAGAGGAAGAAGGAATGATGGATGATTTATTGAATTTAA
TTCGTGATGGTAATTTCAGAGAATTGAGAAGGATGAATCTTCAACAAAAGAAACCAGTTA
GAACTAAAAGAGTAATTGCTAAACAACCAACTCGTCCACAAGCTTTAGATACACCTTCTT
CAACATATTCTTCAATCTCATCTATATATGATGCTGAACCTCTTGATATGAGTGATCAAG
AAGATGAAGATGAAGAAGAAGAAGAAGATGAAGAGGAGGAAGAAGAAGAAGAGGAAGGAG
ATGACGATAATGATAACGATGAAGAAGAAGGTGAAAACTAAAGAAAAAAATAATACATTA
TACTTTATAAAAATACTTAATAAAAATATAAAAATAAAAATATAAAATAAATATGTTTTT
TTTATTTCATTCCTTTA
Length of 3' end seq. 737
Connected seq. ID CHR553P
Connected seq.
>CHR553P.Seq
AAGTTGGGTATTACAAAGGTGATTGAGGAATTGGAGCCAGAATATGCAAATAATCCAGAT
TTGGCAACACAAAAAGATCTATACGAACAGGAATGTAGATGGGATGAACAAGAACAAATT
GAAAATGCACGTGGTGATATCTCTGATGAAAACCCTGAAGCATTGGTAAAGGCAATCCTT
GATAGAACTGCTGGTGGTCCATTGTATTCTTCATTCACTTCAATCTTAAGATTATTGGCA
AATTCAATCACTGATCAAACAAAGGATCAGTCATTGTCAAACTATTTATTCGTAGAGAAG
GTCATTGGTAAAATGAATAATGGTGAATCTTATCTCGATGATATTGGTACATTTTTTGGT
GGAGGTGGTGGTGGTGATGGTAGTTTAGATATCGCTCATGTATCTGGAGAGAAAGCAGTA
CTCATTCAAAAGGAGATTGAAGATTTAAAGAAACAAAAAAAGAGAGATCAAGATAAATTG
GCAGAGAAAGATAAACTCTTAACTAAATTGGCAAAGAGAATGAGAAAGATGGAAGAGGCA
ATT----------AAAGTTTAATGATAAATTTATAATGTCTAAAAAGGATTTGGAAATTG
AAAAATCCATTAAAGATAAATCAACTCAAAGAAAGAATGAAAAGGAGAGAAAAGAAATGG
AGATTAAAAAATCGAAATTGGAAATGATTCATTCGAAATTAAAGAAAATTGGTTCACCTT
CATCCTCCAATAGAATTCTTGCTAGTAATGAATCATCACCAACCTCTTCCACAAGTTCAG
TGGTTCATCAACATGATGATGAAGATGAAGAAACTATCAAAGAGTATATCAATAATCCAA
GTCCATCTCAACAATCAAATTCTTCAGAGGAAGAAGGAATGATGGATGATTTATTGAATT
TAATTCGTGATGGTAATTTCAGAGAATTGAGAAGGATGAATCTTCAACAAAAGAAACCAG
TTAGAACTAAAAGAGTAATTGCTAAACAACCAACTCGTCCACAAGCTTTAGATACACCTT
CTTCAACATATTCTTCAATCTCATCTATATATGATGCTGAACCTCTTGATATGAGTGATC
AAGAAGATGAAGATGAAGAAGAAGAAGAAGATGAAGAGGAGGAAGAAGAAGAAGAGGAAG
GAGATGACGATAATGATAACGATGAAGAAGAAGGTGAAAACTAAAGAAAAAAATAATACA
TTATACTTTATAAAAATACTTAATAAAAATATAAAAATAAAAATATAAAATAAATATGTT
TTTTTTATTTCATTCCTTTA
Length of connected seq. 1270
Full length Seq ID -
Full length Seq. -
Length of full length seq. -