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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR547
Library CH
(Link to library)
Clone ID CHR547
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16361-1
Original site URL
Representative seq. ID CHR547P
(Link to Original site)
Representative DNA sequence 
>CHR547 (CHR547Q) /CSM/CH/CHR5-B/CHR547Q.Seq.d/
TAAAAAAGAAATCTGTTAGAAAAGATTCAGAGAGAAAGTTAAAGAGTAGTGGTGTTTTAA
AGAAAAAGAATACTGTGATGGACTTTGGTGAAGATGATGGTGGTAGTGGTGACGATGGTA
ATATAACCGAAGGTTTACCAATTAGTGAAGGTATGGATGATTTACCATCATCTTCAAACT
CTCGTGGCGGCAGCGGTAATGATGAACAAAAGAAACAGTTCCCAAAGGAAATGAATTCTC
CATCATCGGAATATGGCACAACAAGTGGCGGTCAAAGATTTGATACATTGGTTGATCCTG
ATATTAGTTTAGCAGAGATGGAAGAGAAAATGCGTCAACACAAGGTATACCAAGAGCAAC
AACAGCAACAACAACAACAGCAACAACAACAAAAGCAAAAAGATAAAGAGTTGTCATCAC
AAAAGAAGAAACCATCATCAATGCAATTAAGTAAAAAGAAACATGTCGCCAAAGAAGATT
CTGAAACATTAGAGACAATCATTGGTGAAGAGAAGAAGGAGGTTGTATTTGAAGTTAAAC
CATACTTTTCTCATGCAATTCTTCAAGCAACCATGGCGGTATTTTTAATTTGGAATATTT
TTTACTTTGCATATCGTGCCGGTTGGACAATGAATAGAACCGATTATATCACATTCTCTT
ATTCAATCCTTTTCATXXXXXXXXXXTGCTTCTCCATTAATTATGAGTATTTGGACTGTA
CCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTG
TTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAG
AGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTT
GGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTT
CTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTC
GTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGAT
AATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAA
GAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTT
AATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGG
CTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATT
CCAATGGCTCTTCGTCAAAGTGAAAAACAATGGCCATATGCTTCTTCATACCATGCTCAC
AATATTGTTTTATTCTGGTACTTGGTTTCTGGTATTACTCTTTGTNAGTCAAAGTTTGAT
TCCTAGAG
sequence update 2002.10.25
Translated Amino Acid sequence 
KKKSVRKDSERKLKSSGVLKKKNTVMDFGEDDGGSGDDGNITEGLPISEGMDDLPSSSNS
RGGSGNDEQKKQFPKEMNSPSSEYGTTSGGQRFDTLVDPDISLAEMEEKMRQHKVYQEQQ
QQQQQQQQQQKQKDKELSSQKKKPSSMQLSKKKHVAKEDSETLETIIGEEKKEVVFEVKP
YFSHAILQATMAVFLIWNIFYFAYRAGWTMNRTDYITFSYSILF---

---ASPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLW
VEATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVV
CEVFRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMM
SAVLRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVLFW
YLVSGITLCXSKFDS*
Translated Amino Acid sequence (All Frames) 
Frame A:
*krnllekiqres*rvvvf*rkril*wtlvkmmvvvvtmvi*pkvyqlvkvwmiyhhlqt
lvaaavmmnkrnssqrk*ilhhrnmaqqvavkdlihwlililv*qrwkrkcvntrytksn
nsnnnnsnnnkskkikschhkrrnhhqcn*vkrnmspkkilkh*rqslvkrrrrlylkln
htflmqffkqpwryf*fgifftlhivpvgq*iepiishsliqsfs---

---cfsinyeyldctnrckrsnhfhsrrydscngvtkshsiyds*sqetl*sr*ewsitl
grsy*sles*tnflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketss
l*sfpsn*igq*k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgyd
ecct*i*lfpk*yvafgcrswflflylmafmvfhsngsssk*ktmaicffipcsqycfil
vlgfwyyslxvkv*fle

Frame B:
kkeic*krfrekvke*wcfkekeycdglw*r*ww*w*rw*ynrrftn**ryg*ftiifkl
swrqr***tketvpkgnefsiigiwhnkwrski*yig*s*y*fsrdgrenastqgiprat
tattttatttkakr*rvvitkeetiinaik*ketcrqrrf*nirdnhw*reeggci*s*t
ilfscnsssnhggifnleyfllciscrldne*nrlyhillfnpfh---

---ASPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLW
VEATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVV
CEVFRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMM
SAVLRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVLFW
YLVSGITLCXSKFDS*

Frame C:
KKKSVRKDSERKLKSSGVLKKKNTVMDFGEDDGGSGDDGNITEGLPISEGMDDLPSSSNS
RGGSGNDEQKKQFPKEMNSPSSEYGTTSGGQRFDTLVDPDISLAEMEEKMRQHKVYQEQQ
QQQQQQQQQQKQKDKELSSQKKKPSSMQLSKKKHVAKEDSETLETIIGEEKKEVVFEVKP
YFSHAILQATMAVFLIWNIFYFAYRAGWTMNRTDYITFSYSILF---

---llh*l*vfglyqsl*kiqsfsfssv*fl*wcyqesfni*fleprdlmkpvrvvhhfg
*kllifgelnklslvllvlifhhgekvplqslnflklerlvvis*pcgigreis*rnq*f
vkfsvklnwsmkmimlknqvvnirlnnlsvlqtknliplkiqdfsfqilssllliswl**
vlyldlivskmicgfwls*lvslslpygiyglsfqwlfvkvknnghmllhtmltilfysg
twflvllfvsqslipr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR547 (CHR547Q) /CSM/CH/CHR5-B/CHR547Q.Seq.d/                       2028   0.0
SHA836 (SHA836Q) /CSM/SH/SHA8-B/SHA836Q.Seq.d/                       1485   0.0
SHD704 (SHD704Q) /CSM/SH/SHD7-A/SHD704Q.Seq.d/                       1469   0.0
SHC195 (SHC195Q) /CSM/SH/SHC1-D/SHC195Q.Seq.d/                       1465   0.0
SHK418 (SHK418Q) /CSM/SH/SHK4-A/SHK418Q.Seq.d/                       1459   0.0
SHD746 (SHD746Q) /CSM/SH/SHD7-B/SHD746Q.Seq.d/                       1459   0.0
SHA559 (SHA559Q) /CSM/SH/SHA5-C/SHA559Q.Seq.d/                       1459   0.0
CHQ528 (CHQ528Q) /CSM/CH/CHQ5-B/CHQ528Q.Seq.d/                       1459   0.0
AHN472 (AHN472Q) /CSM/AH/AHN4-C/AHN472Q.Seq.d/                       1459   0.0
AHL670 (AHL670Q) /CSM/AH/AHL6-C/AHL670Q.Seq.d/                       1459   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds.  1407   0.0    3
AC006097|AC006097.1 Homo sapiens chromosome 10 clone CIT987SK-1031G15 map 10q25, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    54   0.008  1
AC004480|AC004480.7 Homo sapiens chromosome 4, WORKING DRAFT SEQUENCE, 7 unordered pieces.    54   0.008  1
AC093323|AC093323.3 Homo sapiens BAC clone RP11-539L10 from 4, complete sequence.    54   0.008  1
AL390197|AL390197.19 Human DNA sequence from clone RP11-190F19 on chromosome 10.    54   0.008  1
AC154396|AC154396.11 Mus musculus chromosome 3, clone RP24-254D5, complete sequence.    36   0.29   2
CX098227|CX098227.1 EHAHI57TR E. histolytica Normalized cDNA library Entamoeba histolytica cDNA, mRNA sequence.    48   0.52   1
CX096781|CX096781.1 EHAGX29TR E. histolytica Normalized cDNA library Entamoeba histolytica cDNA, mRNA sequence.    48   0.52   1
CX080440|CX080440.1 EHAA717TR E. histolytica Normalized cDNA library Entamoeba histolytica cDNA, mRNA sequence.    48   0.52   1
CX080439|CX080439.1 EHAA717TF E. histolytica Normalized cDNA library Entamoeba histolytica cDNA, mRNA sequence.    48   0.52   1
dna update 2005.11.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U...   481   e-134
CP001279_992(CP001279|pid:none) Nautilia profundicola AmH, compl...    40   0.20
CP001048_907(CP001048|pid:none) Yersinia pseudotuberculosis PB1/...    35   4.9
CP001025_1222(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...    35   4.9
CP000431_1654(CP000431|pid:none) Rhodococcus jostii RHA1, comple...    35   8.4
protein update 2009. 4.12
PSORT 

 psg: 0.68  gvh: 0.31  alm: 0.23  top: 0.57  tms: 0.33  mit: 0.32  mip: 0.02
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 40.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: vacuolar
	 12.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for CHR547 is pla
5' end seq. ID CHR547F
5' end seq. 
>CHR547F.Seq
TAAAAAAGAAATCTGTTAGAAAAGATTCAGAGAGAAAGTTAAAGAGTAGTGGTGTTTTAA
AGAAAAAGAATACTGTGATGGACTTTGGTGAAGATGATGGTGGTAGTGGTGACGATGGTA
ATATAACCGAAGGTTTACCAATTAGTGAAGGTATGGATGATTTACCATCATCTTCAAACT
CTCGTGGCGGCAGCGGTAATGATGAACAAAAGAAACAGTTCCCAAAGGAAATGAATTCTC
CATCATCGGAATATGGCACAACAAGTGGCGGTCAAAGATTTGATACATTGGTTGATCCTG
ATATTAGTTTAGCAGAGATGGAAGAGAAAATGCGTCAACACAAGGTATACCAAGAGCAAC
AACAGCAACAACAACAACAGCAACAACAACAAAAGCAAAAAGATAAAGAGTTGTCATCAC
AAAAGAAGAAACCATCATCAATGCAATTAAGTAAAAAGAAACATGTCGCCAAAGAAGATT
CTGAAACATTAGAGACAATCATTGGTGAAGAGAAGAAGGAGGTTGTATTTGAAGTTAAAC
CATACTTTTCTCATGCAATTCTTCAAGCAACCATGGCGGTATTTTTAATTTGGAATATTT
TTTACTTTGCATATCGTGCCGGTTGGACAATGAATAGAACCGATTATATCACATTCTCTT
ATTCAATCCTTTTCATNNNNNNNNNN
Length of 5' end seq. 686
3' end seq. ID CHR547Z
3' end seq. 
>CHR547Z.Seq
NNNNNNNNNNTGCTTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAG
ATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTC
AATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTT
GGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTT
ATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGA
TTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAG
TTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAA
GTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTA
AAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGA
TGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAG
CTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTC
AAAGTGAAAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTATTCT
GGTACTTGGTTTCTGGTATTACTCTTTGTNAGTCAAAGTTTGATTCCTAGAG
Length of 3' end seq. 772
Connected seq. ID CHR547P
Connected seq. 
>CHR547P.Seq
TAAAAAAGAAATCTGTTAGAAAAGATTCAGAGAGAAAGTTAAAGAGTAGTGGTGTTTTAA
AGAAAAAGAATACTGTGATGGACTTTGGTGAAGATGATGGTGGTAGTGGTGACGATGGTA
ATATAACCGAAGGTTTACCAATTAGTGAAGGTATGGATGATTTACCATCATCTTCAAACT
CTCGTGGCGGCAGCGGTAATGATGAACAAAAGAAACAGTTCCCAAAGGAAATGAATTCTC
CATCATCGGAATATGGCACAACAAGTGGCGGTCAAAGATTTGATACATTGGTTGATCCTG
ATATTAGTTTAGCAGAGATGGAAGAGAAAATGCGTCAACACAAGGTATACCAAGAGCAAC
AACAGCAACAACAACAACAGCAACAACAACAAAAGCAAAAAGATAAAGAGTTGTCATCAC
AAAAGAAGAAACCATCATCAATGCAATTAAGTAAAAAGAAACATGTCGCCAAAGAAGATT
CTGAAACATTAGAGACAATCATTGGTGAAGAGAAGAAGGAGGTTGTATTTGAAGTTAAAC
CATACTTTTCTCATGCAATTCTTCAAGCAACCATGGCGGTATTTTTAATTTGGAATATTT
TTTACTTTGCATATCGTGCCGGTTGGACAATGAATAGAACCGATTATATCACATTCTCTT
ATTCAATCCTTTTCAT----------TGCTTCTCCATTAATTATGAGTATTTGGACTGTA
CCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTG
TTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAG
AGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTT
GGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTT
CTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTC
GTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGAT
AATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAA
GAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTT
AATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGG
CTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATT
CCAATGGCTCTTCGTCAAAGTGAAAAACAATGGCCATATGCTTCTTCATACCATGCTCAC
AATATTGTTTTATTCTGGTACTTGGTTTCTGGTATTACTCTTTGTNAGTCAAAGTTTGAT
TCCTAGAG
Length of connected seq. 1438
Full length Seq ID -
Full length Seq. -
Length of full length seq. -